Clone Sequence Records
BS09210.3prime Sequence
926 bp (834 high quality bases) assembled on 2006-01-29
> BS09210.3prime
ATGGTCTAGAAAGCTTCTACCTGCTGGCGGTGCCACTTGGGATGGGGCTT
CCTCCGCCAGCTGCCGGCACGCTTGGAGCTACATTGGAAGTCGGAAGGGT
ATTAGTCGAGCCCGCTTCTTCGTATCGCGTTAGCTTTGCCTCCTGATCGG
CCAGCAGTTCGAGCAAATCTTCTTGATCCTTTTGCATCGCCGCCAGGGAA
TCTTGCGCCGCATCTGCACTCTGTTTTTCGGCTGATAACTGCTGACGTAG
TGTCTCCAGCTCCTTAGTTAGACGAATGTTTTCGGCAAAGTACATGTTGG
CCTGGTAGCGAGCGGCATTTAGCTCCTCCTCGTTGGGCGGCGTGGCTTCC
GCACCTTGGGCGGACTGCACCTGACCGGTCGAGGCTCCCAGCTGTGCCTT
AAGCAGCGTGTTCTGGTCCAAGAGCTGCGCCTTGAGCGACTGCTCCTCAC
CAAGTTTCTCCTTCAGCTCGGCATTCTCCTGTTCCAGTTCTTTGGAGGAT
TGCTGCAGTGCTTGGATCTGGGCATCCATGCCGCGGATAATCCCCTTGTA
CTGGGAAACCAATGCAGAAGCTTCCGAGCTCAACGTGAGTTCGGTCAGTT
CAATGCCATCTACATCAAATCCGCTAACCAGCTTGGCAATCAACGCCTCC
AGTCCCTTGTACAGCTTGCAATACTCGAAGTCAAGCAGTAGTTCCCCAGC
GGATTTGGCACGGATCTGGGCCTGCTTGCATGCCCGACTGTAGGCCTCAT
GTCGCGACACTTCTGCTAGTTTGCTACAGAAGCTCTCCTGGCCAATTCGC
TTGATGATCAGCTGACTGATGTCCTCGCGCTTCTGCCCCGGCAGCGAGTT
GTCATTGAACTGGATGCACAGGCCCATTAGGAAGGCGCACATGCCCTGGA
CAAGGAACTCTCCGTCATCGTGCTCG
BS09210.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1422-PA | 2511 | p115-RA | 1602..2511 | 926..17 | 4475 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p115-RB | 2961 | CG1422-RB | 1698..2609 | 926..15 | 4515 | 99.7 | Minus |
| p115-RA | 2756 | CG1422-RA | 1698..2609 | 926..15 | 4515 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7895728..7896639 | 926..15 | 4515 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:39:37 has no hits.
BS09210.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:40 Download gff for
BS09210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-PA | 1602..2511 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:18 Download gff for
BS09210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1422-PA | 1602..2511 | 17..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:21:30 Download gff for
BS09210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-RA | 1698..2609 | 15..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:31:06 Download gff for
BS09210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-RA | 1698..2609 | 15..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:31:06 Download gff for
BS09210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7895728..7896639 | 15..926 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:21:30 Download gff for
BS09210.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7789761..7790672 | 15..926 | 99 | | Minus |
BS09210.5prime Sequence
896 bp (777 high quality bases) assembled on 2006-01-28
> BS09210.5prime
GAAGTTATCAGTCGACATGGAGTTCCTGAAGAGTGGCATCAAAACGGTGC
TGGGCAGCACGGAGCCGGGTCAGCAGCCGAGTGCCGCCGAGACGGTGGAG
AAGCTGGTGGACCGTGTCTACTCCTCAACGCTCCTGGAGGATCGACGGGA
TGCCTGCCGAGCGCTAAAAGCCCTGTCCCGCAAGTACCGCATCGAGGTGG
GCGCACAGGGCATGCCTCCGCTGGTCCAGGTGCTCCAGAACGACGGACAG
GATGCAGAGATCATCAGCTATGCGCTGGACACACTGTGCAACGTGGTTAC
TAGCGAGGAGTTCGACGAGGAGGCTGATAATCCCACCGTTTCGGTGAATG
TGGGCGAGCAGTTCACGGAGATGTTCATCAAGACACCGGAGCATGTAACC
CTGGTAATGGGCTATCTGGACGAATACGATTTTCGAGTGCGTCGCGCTGC
CATCCAACTGATTACGTCCCTCATTTCGAACAAGACGCGGGAGCTGCAGG
ATTTGATTCTGGTCAGTCCGATGGGCGTTTCCAAGCTGATGGATCTGCTG
ACGGACAGCCGCGAAGTGATTCGCAACGATGTCCTTCTGCTGCTTATCGA
ACTGACCAAGGGCAACTCAAACATCCAAAAGATTGTGGCCTTTGAGAATG
CCTTTGACCGCCTTTTTGAAATTGTCCGTGAGGAGGGCTGTTCGGATGGC
GGAATTGTTGTGGAGGATTGCCTAATTCTGCTATTGAATCTTCTCAAGAA
CAACTCCAGTAATCAGCAGTTCTTTAAGGAGGGCAGCTATATCCAGCGAT
TGTCGCCAATGTTTGAGCTCTCACAGGATGCGGAAGAGGTTGGCTGGTCG
CCACAGAAGGTCTCAAACTTCCATTGTCTGCTGCAGGTGGTGCGGG
BS09210.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1422-PA | 2511 | p115-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p115-RB | 2961 | CG1422-RB | 96..976 | 16..896 | 4405 | 100 | Plus |
| p115-RA | 2756 | CG1422-RA | 96..976 | 16..896 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7894126..7895006 | 16..896 | 4405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:25:34 has no hits.
BS09210.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:41 Download gff for
BS09210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:19 Download gff for
BS09210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1422-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:23:27 Download gff for
BS09210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-RA | 90..976 | 9..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:37:06 Download gff for
BS09210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-RA | 90..976 | 9..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:37:06 Download gff for
BS09210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7894120..7895006 | 9..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:23:27 Download gff for
BS09210.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7788153..7789039 | 9..896 | 99 | | Plus |
BS09210.complete Sequence
2543 bp assembled on 2008-08-14
GenBank Submission: FJ636374
> BS09210.complete
GAAGTTATCAGTCGACATGGAGTTCCTGAAGAGTGGCATCAAAACGGTGC
TGGGCAGCACGGAGCCGGGTCAGCAGCCGAGTGCCGCCGAGACGGTGGAG
AAGCTGGTGGACCGTGTCTACTCCTCAACGCTCCTGGAGGATCGACGGGA
TGCCTGCCGAGCGCTAAAAGCCCTGTCCCGCAAGTACCGCATCGAGGTGG
GCGCACAGGGCATGCCTCCGCTGGTCCAGGTGCTCCAGAACGACGGACAG
GATGCAGAGATCATCAGCTATGCGCTGGACACACTGTGCAACGTGGTTAC
TAGCGAGGAGTTCGACGAGGAGGCTGATAATCCCACCGTTTCGGTGAATG
TGGGCGAGCAGTTCACGGAGATGTTCATCAAGACACCGGAGCATGTAACC
CTGGTAATGGGCTATCTGGACGAATACGATTTTCGAGTGCGTCGCGCTGC
CATCCAACTGATTACGTCCCTCATTTCGAACAAGACGCGGGAGCTGCAGG
ATTTGATTCTGGTCAGTCCGATGGGCGTTTCCAAGCTGATGGATCTGCTG
ACGGACAGCCGCGAAGTGATTCGCAACGATGTCCTTCTGCTGCTTATCGA
ACTGACCAAGGGCAACTCAAACATCCAAAAGATTGTGGCCTTTGAGAATG
CCTTTGACCGCCTTTTTGAAATTGTCCGTGAGGAGGGCTGTTCGGATGGC
GGAATTGTTGTGGAGGATTGCCTAATTCTGCTATTGAATCTTCTCAAGAA
CAACTCCAGTAATCAGCAGTTCTTTAAGGAGGGCAGCTATATCCAGCGAT
TGTCGCCAATGTTTGAGCTCTCACAGGATGCGGAAGAGGTTGGCTGGTCG
CCACAGAAGGTCTCAAACTTCCATTGTCTGCTGCAGGTGGTGCGGGCACT
GGTCACGCCCAGTAATCAACAGCAGGTGGTGGCCGCCTGCCAGCGGGTCA
TGCAAAAGTCTCGACTGCTCCATGCTCTTTGCGAGATTCTGATGAGCAGT
GGTGTCCCTGCGGATATACTCACGGAAACCATCAATGCAGTGGCCGAAGT
GGTGCGCGGCGATCGGGACAACCAGGATGAATTGGGAAGAGTTATGGCTC
CGAGCAGTCCACCCAGACCTGCCATCGTGGTCCTTCTTATGTCCATGATC
AATGAGAAACAACTGCTGGCACTGCGTTGCGCCGTACTCTACTGTTTCGA
GTGCTTTCTTTATCGCAATGCCGATGGCCAGCGGGCGGTTGTACAGACCC
TGCTGCCCTCCAGTGCGTCCGATGTGAGTGCCCTTTCGACGGGACAACTC
CTTTGCACCGGACTCTTCTCCACAGATGCGCTTGCCAACTGGTTCTCCGC
TGTGGCCCTAATGCACTCACTCGTAGAGAATGTCGCCCTAAAGGAGGAAC
TACTGCGCGTACTGCTGGCCACTCCTGGTGGCCAAAAGCCTATCACGCTA
CTCGAGCAGTGCACTAATCTCATGCAGCAGGAACGCTACCGTTTGCAAAG
CAAGGTGGGTCTGCTAATGCTACTCAGCCTGTGGCTGGCGCATTGTCCAG
GTGCGGTGAAGGCTTTGCTGGAAACGCAGGGCACCATGGCCTACCTGACC
GCTCAACTTTGCTCCAACGAGCACGATGAACGAGAGTTCCTTGTCCAGGG
CATGTGCGCCTTCCTAATGGGCCTGTGCATCCAGTTCAATGACAACTCGC
TGCCGGGGCAGAAGCGCGAGGACATCAGTCAGCTGATCATCAAGCGAATT
GGCCAGGAGAGCTTCTGTAGCAAACTAGCAGAAGTGTCGCGACATGAGGC
CTACAGTCGGGCATGCAAGCAGGCCCAGATCCGTGCCAAATCCGCTGGGG
AACTACTGCTTGACTTCGAGTATTGCAAGCTGTACAAGGGACTGGAGGCG
TTGATTGCCAAGCTGGTTAGCGGATTTGATGTAGATGGCATTGAACTGAC
CGAACTCACGTTGAGCTCGGAAGCTTCTGCATTGGTTTCCCAGTACAAGG
GGATTATCCGCGGCATGGATGCCCAGATCCAAGCACTGCAGCAATCCTCC
AAAGAACTGGAACAGGAGAATGCCGAGCTGAAGGAGAAACTTGGTGAGGA
GCAGTCGCTCAAGGCGCAGCTCTTGGACCAGAACACGCTGCTTAAGGCAC
AGCTGGGAGCCTCGACCGGTCAGGTGCAGTCCGCCCAAGGTGCGGAAGCC
ACGCCGCCCAACGAGGAGGAGCTAAATGCCGCTCGCTACCAGGCCAACAT
GTACTTTGCCGAAAACATTCGTCTAACTAAGGAGCTGGAGACACTACGTC
AGCAGTTATCAGCCGAAAAACAGAGTGCAGATGCGGCGCAAGATTCCCTG
GCGGCGATGCAAAAGGATCAAGAAGATTTGCTCGAACTGCTGGCCGATCA
GGAGGCAAAGCTAACGCGATACGAAGAAGCGGGCTCGACTAATACCCTTC
CGACTTCCAATGTAGCTCCAAGCGTGCCGGCAGCTGGCGGAGGAAGCCCC
ATCCCAAGTGGCACCGCCAGCAGGTAGAAGCTTTCTAGACCAT
BS09210.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p115-RB | 2511 | CG1422-PB | 1..2511 | 17..2527 | 12540 | 100 | Plus |
| p115-RA | 2511 | CG1422-PA | 1..2511 | 17..2527 | 12540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p115-RB | 2961 | CG1422-RB | 96..2609 | 16..2529 | 12555 | 100 | Plus |
| p115-RA | 2756 | CG1422-RA | 96..2609 | 16..2529 | 12555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7894126..7896639 | 16..2529 | 12555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:18:12 has no hits.
BS09210.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:36 Download gff for
BS09210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-RA | 84..2603 | 9..2529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:25 Download gff for
BS09210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-RA | 97..2607 | 17..2527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:21 Download gff for
BS09210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-RA | 91..2601 | 17..2527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:51 Download gff for
BS09210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p115-RA | 97..2607 | 17..2527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:51 Download gff for
BS09210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7894127..7896637 | 17..2527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:25 Download gff for
BS09210.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7788160..7790670 | 17..2527 | 99 | | Plus |
BS09210.pep Sequence
Translation from 16 to 2526
> BS09210.pep
MEFLKSGIKTVLGSTEPGQQPSAAETVEKLVDRVYSSTLLEDRRDACRAL
KALSRKYRIEVGAQGMPPLVQVLQNDGQDAEIISYALDTLCNVVTSEEFD
EEADNPTVSVNVGEQFTEMFIKTPEHVTLVMGYLDEYDFRVRRAAIQLIT
SLISNKTRELQDLILVSPMGVSKLMDLLTDSREVIRNDVLLLLIELTKGN
SNIQKIVAFENAFDRLFEIVREEGCSDGGIVVEDCLILLLNLLKNNSSNQ
QFFKEGSYIQRLSPMFELSQDAEEVGWSPQKVSNFHCLLQVVRALVTPSN
QQQVVAACQRVMQKSRLLHALCEILMSSGVPADILTETINAVAEVVRGDR
DNQDELGRVMAPSSPPRPAIVVLLMSMINEKQLLALRCAVLYCFECFLYR
NADGQRAVVQTLLPSSASDVSALSTGQLLCTGLFSTDALANWFSAVALMH
SLVENVALKEELLRVLLATPGGQKPITLLEQCTNLMQQERYRLQSKVGLL
MLLSLWLAHCPGAVKALLETQGTMAYLTAQLCSNEHDEREFLVQGMCAFL
MGLCIQFNDNSLPGQKREDISQLIIKRIGQESFCSKLAEVSRHEAYSRAC
KQAQIRAKSAGELLLDFEYCKLYKGLEALIAKLVSGFDVDGIELTELTLS
SEASALVSQYKGIIRGMDAQIQALQQSSKELEQENAELKEKLGEEQSLKA
QLLDQNTLLKAQLGASTGQVQSAQGAEATPPNEEELNAARYQANMYFAEN
IRLTKELETLRQQLSAEKQSADAAQDSLAAMQKDQEDLLELLADQEAKLT
RYEEAGSTNTLPTSNVAPSVPAAGGGSPIPSGTASR*
BS09210.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p115-PB | 836 | CG1422-PB | 1..836 | 1..836 | 4168 | 100 | Plus |
| p115-PA | 836 | CG1422-PA | 1..836 | 1..836 | 4168 | 100 | Plus |
