Clone Sequence Records
BS09211.3prime Sequence
915 bp (847 high quality bases) assembled on 2006-01-29
> BS09211.3prime
ATGGTCTAGAAAGCTTTTACAGCTTCACATCGTTCTGGTCCGACGTCGCT
GTCGTCGTGGCTCCCACATCTTGGGTTGGCAACTGGGCGGCATCGGCGGT
GCGACGTCGTGACTGAATGTACTCAACCAGATACTCGATGCCCCAGGCAG
TGGCACAAATCATTATGCAAACGCTCTGGGTGTGTATGCAAATCGGATAG
CTGTCGGTCACATCCCGAATGAGACCAATGAGCGGTCCGAATGTGATCAC
AAATAGGGCTTTGCCCACCAGATGCCAGCCGAATGCCGAGGGCAGCTTCT
CCAGTGAGCAATATTCGGATACGGTTAGGGTGAAGTTGCTCAGTGCGGAT
CCACGGAAGAAACCGCAGATCGAAAGCCAAATCATCAACTGGGTCCACTC
CGTTTGCTCAGCCATAATTGAACGGGTCAGGGCAACAAAGATGATGGACA
CGAGGAAAATGGTGCGCTTCTTGATTGTGGTACGATCGAATATCGGCGGC
AGGACAATACGAGCGGCGATATCCGTAATGGCCGTAATCGAGAGGCAAAA
GGCGACGTCCGTCTTCTGGTAGCCCAGATTGGCAAAGAAGAACGGCGTGA
CCATCTTGAAGTTCATCTCGGCCACATAGAAGATGGAGAGACCGAAGAGC
AGATTGAGAAACATCTTATCCTTAAGCATATCAATGTCCAGCAGATCGGC
AAACCGGCGCCAGAAGCCCGGCTTCTTGGCCTTCTTCTTGGCCTCCTCGT
CGAGGGCGGCGGCTGCCTCGGCCTGCTTGTCCAGCTCGGTGGGCTTCATT
TTGATGAAGCTATCGCGATGACCGCCGAGGACAATGCTGCCCGTGGCGGT
GCCCACACGTCGCAGTTCGCGATCGTTCTGCTCGAACTCATCGTCGCCGG
TGTTGAGATGCACCT
BS09211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8034-PA | 1749 | CG8034-RA | 851..1749 | 915..17 | 4445 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8034-RB | 2053 | CG8034-RB | 948..1846 | 915..17 | 4465 | 99.8 | Minus |
| CG8034-RA | 4405 | CG8034-RA | 2012..2910 | 915..17 | 4465 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19283357..19283854 | 418..915 | 2475 | 99.8 | Plus |
| X | 23542271 | X | 19282727..19282936 | 17..226 | 1035 | 99.5 | Plus |
| X | 23542271 | X | 19283000..19283193 | 224..417 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:58:43 has no hits.
BS09211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:42 Download gff for
BS09211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-PA | 851..1749 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:21 Download gff for
BS09211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-PA | 851..1749 | 17..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:42 Download gff for
BS09211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 2012..2918 | 6..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:44 Download gff for
BS09211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 2012..2918 | 6..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:44 Download gff for
BS09211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19282719..19282935 | 6..225 | 97 | <- | Plus |
| X | 19283002..19283193 | 226..417 | 100 | <- | Plus |
| X | 19283357..19283854 | 418..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:42 Download gff for
BS09211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19176752..19176968 | 6..225 | 97 | <- | Plus |
| arm_X | 19177035..19177226 | 226..417 | 100 | <- | Plus |
| arm_X | 19177390..19177887 | 418..915 | 99 | | Plus |
BS09211.5prime Sequence
876 bp (779 high quality bases) assembled on 2006-01-28
> BS09211.5prime
GAAGTTATCAGTCGACATGAACTTCTCTGGACTATTTGTGGGACCGCTGC
TGAAGGAGTTCTCATACCGCAAGGTGGCCATCGCCGGATCTCTGCTGTGC
GGCCTGGGCCTGGCGCTCACATCGCCGGCGACGAGCATGGCCCACATCCT
GAGCACGTACTCGGTGATCAACGGCATCGGTGTGGGCCTCTCCACATCGG
CCGCTTTCGTGGCTCTGAATCACTACTTTAAGCACAAGCGCGGACAGGCG
GTGGGTCTATCGATGGCTGGCACCGCCATGGGCATGCTGATAATGCCGCA
GCTGGTGCGGATCCTGCTGGAAGCGTACGACTTCCGGGGAGCGGTGCTGC
TGCTGGCTGGCGTGGCCCTCAATGCCACGGTCGGATCGGTGCTGCTGCAG
CCGGTGAAGTGGCACATGAAGGAGGAGTTCGACGACGAGGAGCTCATGTG
CATCTCGGCCCTGCCCACCCCGCAGCCACAGCTGACGGTGGGCGGTGCTG
GTGGCGCGGCATCAGCTGGAGCGCCCGTCTTTAAGGTGATCAAGGAGGAT
GGCAACGAGGAGGACGCATTGCCCGAGATGAACACGCTGCTGTTCCATAA
GCCTCATCCCCACCAGCACTCGATGCGCAAGAATTATTCCGAAATGGCCA
TGAACACGATGAACGGCTCTCGGCTGGGTATTCCGAAGAGGCCAACATTT
CCGCGAATCATGTCCCTGGCCGGAGTTCAGTCCGCCGCCCATGGAGCGGG
CGGAGATTCGGGCGGCTATACATCGCAGGCGGAGGTCAACGCTACGCAGC
TGCGCTGCCGCAAGGCCTCGGTCACCTCGAACCTCTCCTACATGGACTTC
ACCGGCTCCATTCTCCAGGTGCATCT
BS09211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8034-PA | 1749 | CG8034-RA | 1..860 | 17..876 | 4250 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8034-RB | 2053 | CG8034-RB | 97..957 | 16..876 | 4275 | 99.8 | Plus |
| CG8034-RA | 4405 | CG8034-RA | 1161..2021 | 16..876 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19283845..19284705 | 876..16 | 4275 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:37:15 has no hits.
BS09211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:43 Download gff for
BS09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:22 Download gff for
BS09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:55:06 Download gff for
BS09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 1154..2021 | 7..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:31 Download gff for
BS09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 1154..2021 | 7..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:31 Download gff for
BS09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19283845..19284712 | 7..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:55:06 Download gff for
BS09211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19177878..19178745 | 7..876 | 99 | | Minus |
BS09211.complete Sequence
1781 bp assembled on 2007-10-17
GenBank Submission: KX800223
> BS09211.complete
GAAGTTATCAGTCGACATGAACTTCTCTGGACTATTTGTGGGACCGCTGC
TGAAGGAGTTCTCATACCGCAAGGTGGCCATCGCCGGATCTCTGCTGTGC
GGCCTGGGCCTGGCGCTCACATCGCCGGCGACGAGCATGGCCCACATCCT
GAGCACGTACTCGGTGATCAACGGCATCGGTGTGGGCCTCTCCACATCGG
CCGCTTTCGTGGCTCTGAATCACTACTTTAAGCACAAGCGCGGACAGGCG
GTGGGTCTATCGATGGCTGGCACCGCCATGGGCATGCTGATAATGCCGCA
GCTGGTGCGGATCCTGCTGGAAGCGTACGACTTCCGGGGAGCGGTGCTGC
TGCTGGCTGGCGTGGCCCTCAATGCCACGGTCGGATCGGTGCTGCTGCAG
CCGGTGAAGTGGCACATGAAGGAGGAGTTCGACGACGAGGAGCTCATGTG
CATCTCGGCCCTGCCCACCCCGCAGCCACAGCTGACGGTGGGCGGTGCTG
GTGGCGCGGCATCAGCTGGAGCGCCCGTCTTTAAGGTGATCAAGGAGGAT
GGCAACGAGGAGGACGCATTGCCCGAGATGAACACGCTGCTGTTCCATAA
GCCTCATCCCCACCAGCACTCGATGCGCAAGAATTATTCCGAAATGGCCA
TGAACACGATGAACGGCTCTCGGCTGGGTATTCCGAAGAGGCCAACATTT
CCGCGAATCATGTCCCTGGCCGGAGTTCAGTCCGCCGCCCATGGAGCGGG
CGGAGATTCGGGCGGCTATACATCGCAGGCGGAGGTCAACGCTACGCAGC
TGCGCTGCCGCAAGGCCTCGGTCACCTCGAACCTCTCCTACATGGACTTC
ACCGGCTCCATTCTCCAGGTGCATCTCAACACCGGCGACGATGAGTTCGA
GCAGAACGATCGCGAACTGCGACGTGTGGGCACCGCCACGGGCAGCATTG
TCCTCGGCGGTCATCGCGATAGCTTCATCAAAATGAAGCCCACCGAGCTG
GACAAGCAGGCCGAGGCAGCCGCCGCCCTCGACGAGGAGGCCAAGAAGAA
GGCCAAGAAGCCGGGCTTCTGGCGCCGGTTTGCCGATCTGCTGGACATTG
ATATGCTTAAGGATAAGATGTTTCTCAATCTGCTCTTCGGTCTCTCCATC
TTCTATGTGGCCGAGATGAACTTCAAGATGGTCACGCCGTTCTTCTTTGC
CAATCTGGGCTACCAGAAGACGGACGTCGCCTTTTGCCTCTCGATTACGG
CCATTACGGATATCGCCGCTCGTATTGTCCTGCCGCCGATATTCGATCGT
ACCACAATCAAGAAGCGCACCATTTTCCTCGTGTCCATCATCTTTGTTGC
CCTGACCCGTTCAATTATGGCTGAGCAAACGGAGTGGACCCAGTTGATGA
TTTGGCTTTCGATCTGCGGTTTCTTCCGTGGATCCGCACTGAGCAACTTC
ACCCTAACCGTATCCGAATATTGCTCACTGGAGAAGCTGCCCTCGGCATT
CGGCTGGCATCTGGTGGGCAAAGCCCTATTTGTGATCACATTCGGACCGC
TCATTGGTCTCATTCGGGATGTGACCGACAGCTATCCGATTTGCATACAC
ACCCAGAGCGTTTGCATAATGATTTGTGCCACTGCCTGGGGCATCGAGTA
TCTGGTTGAGTACATTCAGTCACGACGTCGCACCGCCGATGCCGCCCAGT
TGCCAACCCAAGATGTGGGAGCCACGACGACAGCGACGTCGGACCAGAAC
GATGTGAAGCTGTAAAAGCTTTCTAGACCAT
BS09211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8034-RA | 1944 | CG8034-PA | 195..1944 | 16..1765 | 8690 | 99.8 | Plus |
| CG8034-RB | 1749 | CG8034-PB | 1..1749 | 17..1765 | 8685 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8034-RB | 2053 | CG8034-RB | 97..1846 | 16..1765 | 8690 | 99.8 | Plus |
| CG8034-RA | 4405 | CG8034-RA | 1161..2910 | 16..1765 | 8690 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19283357..19284705 | 1364..16 | 6700 | 99.8 | Minus |
| X | 23542271 | X | 19282727..19282936 | 1765..1556 | 1035 | 99.5 | Minus |
| X | 23542271 | X | 19283000..19283193 | 1558..1365 | 970 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:41:18 has no hits.
BS09211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:02 Download gff for
BS09211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 188..1944 | 7..1765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:40:02 Download gff for
BS09211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 712..2476 | 7..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:42 Download gff for
BS09211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 1162..2908 | 17..1763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:52 Download gff for
BS09211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 720..2466 | 17..1763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:55 Download gff for
BS09211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8034-RA | 1162..2908 | 17..1763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:55 Download gff for
BS09211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19282729..19282935 | 1557..1763 | 99 | <- | Minus |
| X | 19283002..19283193 | 1365..1556 | 100 | <- | Minus |
| X | 19283357..19284704 | 17..1364 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:42 Download gff for
BS09211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19176762..19176968 | 1557..1763 | 99 | <- | Minus |
| arm_X | 19177035..19177226 | 1365..1556 | 100 | <- | Minus |
| arm_X | 19177390..19178737 | 17..1364 | 99 | | Minus |
BS09211.pep Sequence
Translation from 16 to 1764
> BS09211.pep
MNFSGLFVGPLLKEFSYRKVAIAGSLLCGLGLALTSPATSMAHILSTYSV
INGIGVGLSTSAAFVALNHYFKHKRGQAVGLSMAGTAMGMLIMPQLVRIL
LEAYDFRGAVLLLAGVALNATVGSVLLQPVKWHMKEEFDDEELMCISALP
TPQPQLTVGGAGGAASAGAPVFKVIKEDGNEEDALPEMNTLLFHKPHPHQ
HSMRKNYSEMAMNTMNGSRLGIPKRPTFPRIMSLAGVQSAAHGAGGDSGG
YTSQAEVNATQLRCRKASVTSNLSYMDFTGSILQVHLNTGDDEFEQNDRE
LRRVGTATGSIVLGGHRDSFIKMKPTELDKQAEAAAALDEEAKKKAKKPG
FWRRFADLLDIDMLKDKMFLNLLFGLSIFYVAEMNFKMVTPFFFANLGYQ
KTDVAFCLSITAITDIAARIVLPPIFDRTTIKKRTIFLVSIIFVALTRSI
MAEQTEWTQLMIWLSICGFFRGSALSNFTLTVSEYCSLEKLPSAFGWHLV
GKALFVITFGPLIGLIRDVTDSYPICIHTQSVCIMICATAWGIEYLVEYI
QSRRRTADAAQLPTQDVGATTTATSDQNDVKL*
BS09211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8034-PB | 582 | CG8034-PB | 1..582 | 1..582 | 2983 | 100 | Plus |
| CG8034-PA | 647 | CG8034-PA | 66..647 | 1..582 | 2983 | 100 | Plus |
| CG8051-PB | 616 | CG8051-PB | 137..607 | 3..555 | 490 | 26.6 | Plus |
| CG8051-PA | 616 | CG8051-PA | 137..607 | 3..555 | 490 | 26.6 | Plus |
| CG8389-PA | 471 | CG8389-PA | 248..467 | 353..573 | 346 | 32 | Plus |
