Clone BS09212 Report

Search the DGRC for BS09212

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG10026-RB
Protein status:BS09212.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09212.3prime Sequence

930 bp (842 high quality bases) assembled on 2006-01-29

> BS09212.3prime
ATGGTCTAGAAAGCTTCTAGTCAAAGATGAATCCCAATTGCTCCATATCC
TTTTGGATACTATTGCCCGAACACTGCTCCTTCAGCATATCCAACCAGAG
CGTATAAGAGTAGTCCTCGTGCAAGCCACCATAGCGCTTGGGAAGATGTT
CTGGGTTGATGTGTTTGTGCAGGGAAGTCATGTCACTGCCATGGATGTAT
AGCTTTTCTCGCATAGCGGCGTTGAGGAAAGGTTTAAATATCTTGAATGC
CGCGTTGAAGACCCAATTCTGATTTACAATATGAAGGGCGGATGTTCTAA
TGGGCATGGAGGTCACTAGTAGAGCAATCATCTTCTGAGCCACGCTGGGA
CTCAGGTGGAGTATGTGTTCCAAGCCCAGGTCCTTCAGATCGAATATTCC
CACTCCTCCGACAATCTGTGAGATGGGTTCCAGGCTGCCCAGTTCCTGCA
GGACAATGGTGGCGCGAAATATATCGTCGACGGTTACTTGATTGGGTCGC
CACAGTCCGAATCGGTAGATGAGTATCCTATGGCCATGTTGATCCCGATA
GGGAGTCACTGTCAGGATGTCCGATTGCCCAACATGTCTCAGGTCCAGAG
GACGAACCTTCTCATAAAAGCTTTTGTTCTGCTCCCGAAACCTGTAGTAA
CTGCAGAGCAATTTGTAACTGTTCTCGATTTTCCAGTAGCGGGCTCTTAG
GAATTTCTCCAGGTACTTCGCATCACTTCTGTGTGGTTGGCATTCATTAT
GTTCTAGTATGTAGTTACGGAATTGTTCGATGACCTTATCCTTGGAACTG
GGACACTCTCCCTGCTCCTGGGCAAGTCGGCGGATGTGCTCCGGAACCTC
CTCCTCGGTGATGTTTAGCTTGTGCTCGATGGTGGGCATGGTGCGGCATC
CACTGCTGGTCGTCATGTCGACTGATAACT

BS09212.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10026-PB 900 CG10026-RB 1..900 916..17 4500 100 Minus
CG10026-PA 873 CG10026-RA 1..873 889..17 4365 100 Minus
CG10026-PC 873 CG10026-RC 1..873 889..17 4365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10026-RB 1533 CG10026-RB 504..1403 916..17 4500 100 Minus
CG10026-RD 1143 CG10026-RD 115..1013 915..17 4495 100 Minus
CG10026-RA 1585 CG10026-RA 557..1455 915..17 4495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19456823..19457168 659..314 1730 100 Minus
2L 23513712 2L 19457227..19457406 314..135 900 100 Minus
2L 23513712 2L 19456408..19456568 914..754 805 100 Minus
2L 23513712 2L 19457475..19457593 135..17 595 100 Minus
2L 23513712 2L 19456628..19456724 755..659 485 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:40:41 has no hits.

BS09212.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:45 Download gff for BS09212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-PB 1..900 17..916 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:24 Download gff for BS09212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-PB 1..900 17..916 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:51:36 Download gff for BS09212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 499..1407 11..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:16 Download gff for BS09212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 499..1407 11..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:16 Download gff for BS09212.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19456408..19456568 754..914 100 -> Minus
2L 19456630..19456724 659..753 100 -> Minus
2L 19456824..19457168 314..658 100 -> Minus
2L 19457228..19457406 135..313 100 -> Minus
2L 19457476..19457597 11..134 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:51:36 Download gff for BS09212.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19456408..19456568 754..914 100 -> Minus
arm_2L 19456630..19456724 659..753 100 -> Minus
arm_2L 19456824..19457168 314..658 100 -> Minus
arm_2L 19457228..19457406 135..313 100 -> Minus
arm_2L 19457476..19457597 11..134 98   Minus

BS09212.5prime Sequence

900 bp (848 high quality bases) assembled on 2006-01-28

> BS09212.5prime
GAAGTTATCAGTCGACATGACGACCAGCAGTGGATGCCGCACCATGCCCA
CCATCGAGCACAAGCTAAACATCACCGAGGAGGAGGTTCCGGAGCACATC
CGCCGACTTGCCCAGGAGCAGGGAGAGTGTCCCAGTTCCAAGGATAAGGT
CATCGAACAATTCCGTAACTACATACTAGAACATAATGAATGCCAACCAC
ACAGAAGTGATGCGAAGTACCTGGAGAAATTCCTAAGAGCCCGCTACTGG
AAAATCGAGAACAGTTACAAATTGCTCTGCAGTTACTACAGGTTTCGGGA
GCAGAACAAAAGCTTTTATGAGAAGGTTCGTCCTCTGGACCTGAGACATG
TTGGGCAATCGGACATCCTGACAGTGACTCCCTATCGGGATCAACATGGC
CATAGGATACTCATCTACCGATTCGGACTGTGGCGACCCAATCAAGTAAC
CGTCGACGATATATTTCGCGCCACCATTGTCCTGCAGGAACTGGGCAGCC
TGGAACCCATCTCACAGATTGTCGGAGGAGTGGGAATATTCGATCTGAAG
GACCTGGGCTTGGAACACATACTCCACCTGAGTCCCAGCGTGGCTCAGAA
GATGATTGCTCTACTAGTGACCTCCATGCCCATTAGAACATCCGCCCTTC
ATATTGTAAATCAGAATTGGGTCTTCAACGCGGCATTCAAGATATTTAAA
CCTTTCCTCAACGCCGCTATGCGAGAAAAGCTATACATCCATGGCAGTGA
CATGACTTCCCTGCACAAACACATCAACCCAGAACATCTTCCCAAGCGCT
ATGGTGGCTTGCACGAGGACTACTCTTATACGCTCTGGGTGGATATGCTG
AGGGAGCAGTGTTCGGGGCATAGTATCCAAAAGGATATGGAGCAATTGGG

BS09212.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10026-PB 900 CG10026-RB 1..884 17..900 4320 99.5 Plus
CG10026-PA 873 CG10026-RA 1..857 44..900 4185 99.5 Plus
CG10026-PC 873 CG10026-RC 1..857 44..900 4185 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10026-RB 1533 CG10026-RB 504..1387 17..900 4360 99.5 Plus
CG10026-RD 1143 CG10026-RD 115..997 18..900 4355 99.5 Plus
CG10026-RA 1585 CG10026-RA 557..1439 18..900 4355 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19456823..19457168 274..619 1730 100 Plus
2L 23513712 2L 19457227..19457406 619..798 900 100 Plus
2L 23513712 2L 19456408..19456568 19..179 805 100 Plus
2L 23513712 2L 19456628..19456724 178..274 485 100 Plus
2L 23513712 2L 19457475..19457577 798..900 455 96.1 Plus
Blast to na_te.dros performed on 2015-02-11 11:03:50 has no hits.

BS09212.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:46 Download gff for BS09212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-PB 1..884 17..900 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:25 Download gff for BS09212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-PB 1..884 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:52 Download gff for BS09212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 499..1387 9..900 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:00 Download gff for BS09212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 499..1387 9..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:00 Download gff for BS09212.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19456408..19456568 19..179 100 -> Plus
2L 19456630..19456724 180..274 100 -> Plus
2L 19456824..19457168 275..619 100 -> Plus
2L 19457228..19457406 620..798 100 -> Plus
2L 19457476..19457577 799..900 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:52 Download gff for BS09212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19456408..19456568 19..179 100 -> Plus
arm_2L 19456630..19456724 180..274 100 -> Plus
arm_2L 19456824..19457168 275..619 100 -> Plus
arm_2L 19457228..19457406 620..798 100 -> Plus
arm_2L 19457476..19457577 799..900 96   Plus

BS09212.complete Sequence

932 bp (932 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636375

> BS09212.complete
GAAGTTATCAGTCGACATGACGACCAGCAGTGGATGCCGCACCATGCCCA
CCATCGAGCACAAGCTAAACATCACCGAGGAGGAGGTTCCGGAGCACATC
CGCCGACTTGCCCAGGAGCAGGGAGAGTGTCCCAGTTCCAAGGATAAGGT
CATCGAACAATTCCGTAACTACATACTAGAACATAATGAATGCCAACCAC
ACAGAAGTGATGCGAAGTACCTGGAGAAATTCCTAAGAGCCCGCTACTGG
AAAATCGAGAACAGTTACAAATTGCTCTGCAGTTACTACAGGTTTCGGGA
GCAGAACAAAAGCTTTTATGAGAAGGTTCGTCCTCTGGACCTGAGACATG
TTGGGCAATCGGACATCCTGACAGTGACTCCCTATCGGGATCAACATGGC
CATAGGATACTCATCTACCGATTCGGACTGTGGCGACCCAATCAAGTAAC
CGTCGACGATATATTTCGCGCCACCATTGTCCTGCAGGAACTGGGCAGCC
TGGAACCCATCTCACAGATTGTCGGAGGAGTGGGAATATTCGATCTGAAG
GACCTGGGCTTGGAACACATACTCCACCTGAGTCCCAGCGTGGCTCAGAA
GATGATTGCTCTACTAGTGACCTCCATGCCCATTAGAACATCCGCCCTTC
ATATTGTAAATCAGAATTGGGTCTTCAACGCGGCATTCAAGATATTTAAA
CCTTTCCTCAACGCCGCTATGCGAGAAAAGCTATACATCCATGGCAGTGA
CATGACTTCCCTGCACAAACACATCAACCCAGAACATCTTCCCAAGCGCT
ATGGTGGCTTGCACGAGGACTACTCTTATACGCTCTGGTTGGATATGCTG
AAGGAGCAGTGTTCGGGCAATAGTATCCAAAAGGATATGGAGCAATTGGG
ATTCATCTTTGACTAGAAGCTTTCTAGACCAT

BS09212.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10026-RB 900 CG10026-PB 1..900 17..916 4500 100 Plus
CG10026-RD 873 CG10026-PD 1..873 44..916 4365 100 Plus
CG10026-RC 873 CG10026-PC 1..873 44..916 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10026-RB 1533 CG10026-RB 504..1403 17..916 4500 100 Plus
CG10026-RD 1143 CG10026-RD 115..1013 18..916 4495 100 Plus
CG10026-RA 1585 CG10026-RA 557..1455 18..916 4495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19456823..19457168 274..619 1730 100 Plus
2L 23513712 2L 19457227..19457406 619..798 900 100 Plus
2L 23513712 2L 19456408..19456568 19..179 805 100 Plus
2L 23513712 2L 19457475..19457593 798..916 595 100 Plus
2L 23513712 2L 19456628..19456724 178..274 485 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:09:39 has no hits.

BS09212.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:01 Download gff for BS09212.complete
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:45 Download gff for BS09212.complete
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 499..1407 9..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:22 Download gff for BS09212.complete
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 504..1403 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:01 Download gff for BS09212.complete
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 499..1407 9..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:33 Download gff for BS09212.complete
Subject Subject Range Query Range Percent Splice Strand
CG10026-RB 504..1403 17..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:33 Download gff for BS09212.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19456407..19456568 17..179 99 -> Plus
2L 19456630..19456724 180..274 100 -> Plus
2L 19456824..19457168 275..619 100 -> Plus
2L 19457228..19457406 620..798 100 -> Plus
2L 19457476..19457593 799..916 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:22 Download gff for BS09212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19457228..19457406 620..798 100 -> Plus
arm_2L 19457476..19457593 799..916 100   Plus
arm_2L 19456407..19456568 17..179 99 -> Plus
arm_2L 19456630..19456724 180..274 100 -> Plus
arm_2L 19456824..19457168 275..619 100 -> Plus

BS09212.pep Sequence

Translation from 16 to 915

> BS09212.pep
MTTSSGCRTMPTIEHKLNITEEEVPEHIRRLAQEQGECPSSKDKVIEQFR
NYILEHNECQPHRSDAKYLEKFLRARYWKIENSYKLLCSYYRFREQNKSF
YEKVRPLDLRHVGQSDILTVTPYRDQHGHRILIYRFGLWRPNQVTVDDIF
RATIVLQELGSLEPISQIVGGVGIFDLKDLGLEHILHLSPSVAQKMIALL
VTSMPIRTSALHIVNQNWVFNAAFKIFKPFLNAAMREKLYIHGSDMTSLH
KHINPEHLPKRYGGLHEDYSYTLWLDMLKEQCSGNSIQKDMEQLGFIFD*

BS09212.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10026-PB 299 CG10026-PB 1..299 1..299 1590 100 Plus
CG10026-PD 290 CG10026-PD 1..290 10..299 1542 100 Plus
CG10026-PC 290 CG10026-PC 1..290 10..299 1542 100 Plus
CG10026-PA 290 CG10026-PA 1..290 10..299 1542 100 Plus
CG5973-PF 311 CG5973-PF 23..272 16..264 406 35.3 Plus