Clone Sequence Records
BS09212.3prime Sequence
930 bp (842 high quality bases) assembled on 2006-01-29
> BS09212.3prime
ATGGTCTAGAAAGCTTCTAGTCAAAGATGAATCCCAATTGCTCCATATCC
TTTTGGATACTATTGCCCGAACACTGCTCCTTCAGCATATCCAACCAGAG
CGTATAAGAGTAGTCCTCGTGCAAGCCACCATAGCGCTTGGGAAGATGTT
CTGGGTTGATGTGTTTGTGCAGGGAAGTCATGTCACTGCCATGGATGTAT
AGCTTTTCTCGCATAGCGGCGTTGAGGAAAGGTTTAAATATCTTGAATGC
CGCGTTGAAGACCCAATTCTGATTTACAATATGAAGGGCGGATGTTCTAA
TGGGCATGGAGGTCACTAGTAGAGCAATCATCTTCTGAGCCACGCTGGGA
CTCAGGTGGAGTATGTGTTCCAAGCCCAGGTCCTTCAGATCGAATATTCC
CACTCCTCCGACAATCTGTGAGATGGGTTCCAGGCTGCCCAGTTCCTGCA
GGACAATGGTGGCGCGAAATATATCGTCGACGGTTACTTGATTGGGTCGC
CACAGTCCGAATCGGTAGATGAGTATCCTATGGCCATGTTGATCCCGATA
GGGAGTCACTGTCAGGATGTCCGATTGCCCAACATGTCTCAGGTCCAGAG
GACGAACCTTCTCATAAAAGCTTTTGTTCTGCTCCCGAAACCTGTAGTAA
CTGCAGAGCAATTTGTAACTGTTCTCGATTTTCCAGTAGCGGGCTCTTAG
GAATTTCTCCAGGTACTTCGCATCACTTCTGTGTGGTTGGCATTCATTAT
GTTCTAGTATGTAGTTACGGAATTGTTCGATGACCTTATCCTTGGAACTG
GGACACTCTCCCTGCTCCTGGGCAAGTCGGCGGATGTGCTCCGGAACCTC
CTCCTCGGTGATGTTTAGCTTGTGCTCGATGGTGGGCATGGTGCGGCATC
CACTGCTGGTCGTCATGTCGACTGATAACT
BS09212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-PB | 900 | CG10026-RB | 1..900 | 916..17 | 4500 | 100 | Minus |
CG10026-PA | 873 | CG10026-RA | 1..873 | 889..17 | 4365 | 100 | Minus |
CG10026-PC | 873 | CG10026-RC | 1..873 | 889..17 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RB | 1533 | CG10026-RB | 504..1403 | 916..17 | 4500 | 100 | Minus |
CG10026-RD | 1143 | CG10026-RD | 115..1013 | 915..17 | 4495 | 100 | Minus |
CG10026-RA | 1585 | CG10026-RA | 557..1455 | 915..17 | 4495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19456823..19457168 | 659..314 | 1730 | 100 | Minus |
2L | 23513712 | 2L | 19457227..19457406 | 314..135 | 900 | 100 | Minus |
2L | 23513712 | 2L | 19456408..19456568 | 914..754 | 805 | 100 | Minus |
2L | 23513712 | 2L | 19457475..19457593 | 135..17 | 595 | 100 | Minus |
2L | 23513712 | 2L | 19456628..19456724 | 755..659 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:40:41 has no hits.
BS09212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:45 Download gff for
BS09212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-PB | 1..900 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:24 Download gff for
BS09212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-PB | 1..900 | 17..916 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:51:36 Download gff for
BS09212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 499..1407 | 11..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:16 Download gff for
BS09212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 499..1407 | 11..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:16 Download gff for
BS09212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19456408..19456568 | 754..914 | 100 | -> | Minus |
2L | 19456630..19456724 | 659..753 | 100 | -> | Minus |
2L | 19456824..19457168 | 314..658 | 100 | -> | Minus |
2L | 19457228..19457406 | 135..313 | 100 | -> | Minus |
2L | 19457476..19457597 | 11..134 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:51:36 Download gff for
BS09212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19456408..19456568 | 754..914 | 100 | -> | Minus |
arm_2L | 19456630..19456724 | 659..753 | 100 | -> | Minus |
arm_2L | 19456824..19457168 | 314..658 | 100 | -> | Minus |
arm_2L | 19457228..19457406 | 135..313 | 100 | -> | Minus |
arm_2L | 19457476..19457597 | 11..134 | 98 | | Minus |
BS09212.5prime Sequence
900 bp (848 high quality bases) assembled on 2006-01-28
> BS09212.5prime
GAAGTTATCAGTCGACATGACGACCAGCAGTGGATGCCGCACCATGCCCA
CCATCGAGCACAAGCTAAACATCACCGAGGAGGAGGTTCCGGAGCACATC
CGCCGACTTGCCCAGGAGCAGGGAGAGTGTCCCAGTTCCAAGGATAAGGT
CATCGAACAATTCCGTAACTACATACTAGAACATAATGAATGCCAACCAC
ACAGAAGTGATGCGAAGTACCTGGAGAAATTCCTAAGAGCCCGCTACTGG
AAAATCGAGAACAGTTACAAATTGCTCTGCAGTTACTACAGGTTTCGGGA
GCAGAACAAAAGCTTTTATGAGAAGGTTCGTCCTCTGGACCTGAGACATG
TTGGGCAATCGGACATCCTGACAGTGACTCCCTATCGGGATCAACATGGC
CATAGGATACTCATCTACCGATTCGGACTGTGGCGACCCAATCAAGTAAC
CGTCGACGATATATTTCGCGCCACCATTGTCCTGCAGGAACTGGGCAGCC
TGGAACCCATCTCACAGATTGTCGGAGGAGTGGGAATATTCGATCTGAAG
GACCTGGGCTTGGAACACATACTCCACCTGAGTCCCAGCGTGGCTCAGAA
GATGATTGCTCTACTAGTGACCTCCATGCCCATTAGAACATCCGCCCTTC
ATATTGTAAATCAGAATTGGGTCTTCAACGCGGCATTCAAGATATTTAAA
CCTTTCCTCAACGCCGCTATGCGAGAAAAGCTATACATCCATGGCAGTGA
CATGACTTCCCTGCACAAACACATCAACCCAGAACATCTTCCCAAGCGCT
ATGGTGGCTTGCACGAGGACTACTCTTATACGCTCTGGGTGGATATGCTG
AGGGAGCAGTGTTCGGGGCATAGTATCCAAAAGGATATGGAGCAATTGGG
BS09212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-PB | 900 | CG10026-RB | 1..884 | 17..900 | 4320 | 99.5 | Plus |
CG10026-PA | 873 | CG10026-RA | 1..857 | 44..900 | 4185 | 99.5 | Plus |
CG10026-PC | 873 | CG10026-RC | 1..857 | 44..900 | 4185 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RB | 1533 | CG10026-RB | 504..1387 | 17..900 | 4360 | 99.5 | Plus |
CG10026-RD | 1143 | CG10026-RD | 115..997 | 18..900 | 4355 | 99.5 | Plus |
CG10026-RA | 1585 | CG10026-RA | 557..1439 | 18..900 | 4355 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19456823..19457168 | 274..619 | 1730 | 100 | Plus |
2L | 23513712 | 2L | 19457227..19457406 | 619..798 | 900 | 100 | Plus |
2L | 23513712 | 2L | 19456408..19456568 | 19..179 | 805 | 100 | Plus |
2L | 23513712 | 2L | 19456628..19456724 | 178..274 | 485 | 100 | Plus |
2L | 23513712 | 2L | 19457475..19457577 | 798..900 | 455 | 96.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:03:50 has no hits.
BS09212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:46 Download gff for
BS09212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-PB | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:25 Download gff for
BS09212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-PB | 1..884 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:05:52 Download gff for
BS09212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 499..1387 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:00 Download gff for
BS09212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 499..1387 | 9..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:00 Download gff for
BS09212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19456408..19456568 | 19..179 | 100 | -> | Plus |
2L | 19456630..19456724 | 180..274 | 100 | -> | Plus |
2L | 19456824..19457168 | 275..619 | 100 | -> | Plus |
2L | 19457228..19457406 | 620..798 | 100 | -> | Plus |
2L | 19457476..19457577 | 799..900 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:05:52 Download gff for
BS09212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19456408..19456568 | 19..179 | 100 | -> | Plus |
arm_2L | 19456630..19456724 | 180..274 | 100 | -> | Plus |
arm_2L | 19456824..19457168 | 275..619 | 100 | -> | Plus |
arm_2L | 19457228..19457406 | 620..798 | 100 | -> | Plus |
arm_2L | 19457476..19457577 | 799..900 | 96 | | Plus |
BS09212.complete Sequence
932 bp (932 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636375
> BS09212.complete
GAAGTTATCAGTCGACATGACGACCAGCAGTGGATGCCGCACCATGCCCA
CCATCGAGCACAAGCTAAACATCACCGAGGAGGAGGTTCCGGAGCACATC
CGCCGACTTGCCCAGGAGCAGGGAGAGTGTCCCAGTTCCAAGGATAAGGT
CATCGAACAATTCCGTAACTACATACTAGAACATAATGAATGCCAACCAC
ACAGAAGTGATGCGAAGTACCTGGAGAAATTCCTAAGAGCCCGCTACTGG
AAAATCGAGAACAGTTACAAATTGCTCTGCAGTTACTACAGGTTTCGGGA
GCAGAACAAAAGCTTTTATGAGAAGGTTCGTCCTCTGGACCTGAGACATG
TTGGGCAATCGGACATCCTGACAGTGACTCCCTATCGGGATCAACATGGC
CATAGGATACTCATCTACCGATTCGGACTGTGGCGACCCAATCAAGTAAC
CGTCGACGATATATTTCGCGCCACCATTGTCCTGCAGGAACTGGGCAGCC
TGGAACCCATCTCACAGATTGTCGGAGGAGTGGGAATATTCGATCTGAAG
GACCTGGGCTTGGAACACATACTCCACCTGAGTCCCAGCGTGGCTCAGAA
GATGATTGCTCTACTAGTGACCTCCATGCCCATTAGAACATCCGCCCTTC
ATATTGTAAATCAGAATTGGGTCTTCAACGCGGCATTCAAGATATTTAAA
CCTTTCCTCAACGCCGCTATGCGAGAAAAGCTATACATCCATGGCAGTGA
CATGACTTCCCTGCACAAACACATCAACCCAGAACATCTTCCCAAGCGCT
ATGGTGGCTTGCACGAGGACTACTCTTATACGCTCTGGTTGGATATGCTG
AAGGAGCAGTGTTCGGGCAATAGTATCCAAAAGGATATGGAGCAATTGGG
ATTCATCTTTGACTAGAAGCTTTCTAGACCAT
BS09212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RB | 900 | CG10026-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
CG10026-RD | 873 | CG10026-PD | 1..873 | 44..916 | 4365 | 100 | Plus |
CG10026-RC | 873 | CG10026-PC | 1..873 | 44..916 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RB | 1533 | CG10026-RB | 504..1403 | 17..916 | 4500 | 100 | Plus |
CG10026-RD | 1143 | CG10026-RD | 115..1013 | 18..916 | 4495 | 100 | Plus |
CG10026-RA | 1585 | CG10026-RA | 557..1455 | 18..916 | 4495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19456823..19457168 | 274..619 | 1730 | 100 | Plus |
2L | 23513712 | 2L | 19457227..19457406 | 619..798 | 900 | 100 | Plus |
2L | 23513712 | 2L | 19456408..19456568 | 19..179 | 805 | 100 | Plus |
2L | 23513712 | 2L | 19457475..19457593 | 798..916 | 595 | 100 | Plus |
2L | 23513712 | 2L | 19456628..19456724 | 178..274 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:39 has no hits.
BS09212.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:01 Download gff for
BS09212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:45 Download gff for
BS09212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 499..1407 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:22 Download gff for
BS09212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 504..1403 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:01 Download gff for
BS09212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 499..1407 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:33 Download gff for
BS09212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 504..1403 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:33 Download gff for
BS09212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19456407..19456568 | 17..179 | 99 | -> | Plus |
2L | 19456630..19456724 | 180..274 | 100 | -> | Plus |
2L | 19456824..19457168 | 275..619 | 100 | -> | Plus |
2L | 19457228..19457406 | 620..798 | 100 | -> | Plus |
2L | 19457476..19457593 | 799..916 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:22 Download gff for
BS09212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19457228..19457406 | 620..798 | 100 | -> | Plus |
arm_2L | 19457476..19457593 | 799..916 | 100 | | Plus |
arm_2L | 19456407..19456568 | 17..179 | 99 | -> | Plus |
arm_2L | 19456630..19456724 | 180..274 | 100 | -> | Plus |
arm_2L | 19456824..19457168 | 275..619 | 100 | -> | Plus |
BS09212.pep Sequence
Translation from 16 to 915
> BS09212.pep
MTTSSGCRTMPTIEHKLNITEEEVPEHIRRLAQEQGECPSSKDKVIEQFR
NYILEHNECQPHRSDAKYLEKFLRARYWKIENSYKLLCSYYRFREQNKSF
YEKVRPLDLRHVGQSDILTVTPYRDQHGHRILIYRFGLWRPNQVTVDDIF
RATIVLQELGSLEPISQIVGGVGIFDLKDLGLEHILHLSPSVAQKMIALL
VTSMPIRTSALHIVNQNWVFNAAFKIFKPFLNAAMREKLYIHGSDMTSLH
KHINPEHLPKRYGGLHEDYSYTLWLDMLKEQCSGNSIQKDMEQLGFIFD*
BS09212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-PB | 299 | CG10026-PB | 1..299 | 1..299 | 1590 | 100 | Plus |
CG10026-PD | 290 | CG10026-PD | 1..290 | 10..299 | 1542 | 100 | Plus |
CG10026-PC | 290 | CG10026-PC | 1..290 | 10..299 | 1542 | 100 | Plus |
CG10026-PA | 290 | CG10026-PA | 1..290 | 10..299 | 1542 | 100 | Plus |
CG5973-PF | 311 | CG5973-PF | 23..272 | 16..264 | 406 | 35.3 | Plus |