Clone Sequence Records
BS09215.3prime Sequence
960 bp (894 high quality bases) assembled on 2006-01-29
> BS09215.3prime
ATGGTCTAGAAAGCTTCTAGTTGCAGGCGGCATTGAGCGCCAGCGCCCCC
TCCGCACTGGTCGATGGCCCGACCTCGTGGACATTGTTGTAGTCCGCTTT
GGCATTGCACTTTGCTGAACTCTGATCCTGTATGCTTCCGTTCAGGCCAC
CGCTCTTCAGCGAGTAGATCCCCAGGCGCGCCTCGTGCTCCCGTCGTTGC
TGCCGCAGCCGGATGTCGTGCTCCTCGCGCATGTGCCGCAGCTTGAGGTC
CTGCTCCTGCCGGTAGTAGGCCATCTTCACCTCCTGCTCCATCTGCTCGA
AGCGCAGCTTCTGCTCGTGTTCCCGCCGGGCGTAGTCGATTTCGGCCAGA
CGGGCCTGCTTGAGCAGCCTAAACAGGTCCTGCTTGTACTTCTGCTCTAT
CTCCGTGGCGGCGACCAAATCTAAGGACTGGCTATTTGTGTCTGCAACTG
GGGTGGCGCTCGGAGCTGCGTTGGTGGAGGCTTCGTTCTCGTCGGACAGC
AGCGACTGGGCCTGTGAGAGATTCCTTTGTCGCCGCTTTCGTGGTGGGCC
TACGCCCTTTTCGTTCTCCTCCCCCGTTTCGCCGGACGTTTCTGTCTTGG
CGCCCGAGGGCGACTGCTTGGCCTTGGTCCGCTTGCGTCGCTGGGCTGGC
AGCTGGGCGGGATTTCCCTCCTGCTGGGAGTCCCCGTCTCCGCCAGCAGT
GGAGGGCGGCGGCGAGGGGATGGCTATTGTGGAGGTCTGCAGCGTGTCCT
CGCTGGCGTTCGTAGAGTTGGGCAGAGCGGCCAGCGGCATGTCTTCGTCC
TCGTCGATGTCCATGAGCTCCTTCTTAAGAGCGCCGTTTGTGTTCGCGCT
GCGTGTCTGACTGCGCGAGGTGACCGGATCCTTCTGCATCTCCTCCCAGA
ACTNCATCATCCGCATGCCTTCCAGGGCCTCCCGTTTCGGATGCTTCTGC
TGGTGCTCCC
BS09215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-PA | 1362 | CG3548-RA | 419..1362 | 960..17 | 4576 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-RA | 2218 | CG3548-RA | 520..1463 | 960..17 | 4634 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24601109..24601612 | 520..17 | 2520 | 100 | Minus |
2R | 25286936 | 2R | 24600541..24600980 | 960..521 | 2114 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:41:14 has no hits.
BS09215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:50 Download gff for
BS09215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-PA | 419..1362 | 17..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:29 Download gff for
BS09215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-PA | 419..1362 | 17..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:45 Download gff for
BS09215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 520..1467 | 13..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:38 Download gff for
BS09215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 520..1467 | 13..960 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:38 Download gff for
BS09215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24600541..24600980 | 521..960 | 98 | -> | Minus |
2R | 24601109..24601616 | 13..520 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:45 Download gff for
BS09215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20488064..20488503 | 521..960 | 98 | -> | Minus |
arm_2R | 20488632..20489139 | 13..520 | 99 | | Minus |
BS09215.5prime Sequence
982 bp (800 high quality bases) assembled on 2006-01-28
> BS09215.5prime
GAAGTTATCAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCT
CCTCTCCGCCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCG
CAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGA
TGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGG
GCACGCGCAAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTG
CTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGT
GGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCA
AGCAGTTCAATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAG
GTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAA
GCATCCGAAAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGG
AGGAGATGCAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCG
AACACAAACGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGA
AGACATGCCGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACA
CGCTGCAGACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCT
GGCGGAGACGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGC
CCAGCGACGCANGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGA
CAGAAACGTCCGGCGAAACGGGGGAGGAGAAACGAAAGGGCGTAGGCCCA
CCACGAAAGCGGCGACNAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTC
CGACGAGAACGAAGCCTCCACCAACGCAGCTCCGAGCGCCACCCCAGTTG
CAGACACNAATAGCCAGTCCTTTAGATTGGGG
BS09215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-PA | 1362 | CG3548-RA | 1..815 | 17..831 | 4031 | 99.7 | Plus |
CG3548-PA | 1362 | CG3548-RA | 819..956 | 835..972 | 652 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-RA | 2218 | CG3548-RA | 102..1062 | 17..978 | 4692 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24600461..24600980 | 355..874 | 2518 | 98.8 | Plus |
2R | 25286936 | 2R | 24600048..24600387 | 17..356 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 24601109..24601206 | 875..972 | 479 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:54:48 has no hits.
BS09215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:51 Download gff for
BS09215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-PA | 1..964 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:30 Download gff for
BS09215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-PA | 1..964 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:33 Download gff for
BS09215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 102..1065 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:10 Download gff for
BS09215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 102..1065 | 17..982 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:10 Download gff for
BS09215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24600048..24600385 | 17..354 | 100 | -> | Plus |
2R | 24600461..24600980 | 355..874 | 99 | -> | Plus |
2R | 24601109..24601214 | 875..982 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:33 Download gff for
BS09215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20487571..20487908 | 17..354 | 100 | -> | Plus |
arm_2R | 20487984..20488503 | 355..874 | 99 | -> | Plus |
arm_2R | 20488632..20488737 | 875..982 | 96 | | Plus |
BS09215.complete Sequence
1394 bp (1394 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636376
> BS09215.complete
GAAGTTATCAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCT
CCTCTCCGCCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCG
CAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGA
TGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGG
GCACGCGCAAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTG
CTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGT
GGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCA
AGCAGTTCAATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAG
GTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAA
GCATCCGAAAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGG
AGGAGATGCAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCG
AACACAAACGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGA
AGACATGCCGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACA
CGCTGCAGACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCT
GGCGGAGACGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGC
CCAGCGACGCAAGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGA
CAGAAACGTCCGGCGAAACGGGGGAGGAGAACGAAAAGGGCGTAGGCCCA
CCACGAAAGCGGCGACAAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTC
CGACGAGAACGAAGCCTCCACCAACGCAGCTCCGAGCGCCACCCCAGTTG
CAGACACAAATAGCCAGTCCTTAGATTTGGTCGCCGCCACGGAGATAGAG
CAGAAGTACAAGCAGGACCTGTTTAGGCTGCTCAAGCAGGCCCGTCTGGC
CGAAATCGACTACGCCCGGCGGGAACACGAGCAGAAGCTGCGCTTCGAGC
AGATGGAGCAGGAGGTGAAGATGGCCTACTACCGGCAGGAGCAGGACCTC
AAGCTGCGGCACATGCGCGAGGAGCACGACATCCGGCTGCGGCAGCAACG
ACGGGAGCACGAGGCGCGCCTGGGGATCTACTCGCTGAAGAGCGGTGGCC
TGAACGGAAGCATACAGGATCAGAGTTCAGCAAAGTGCAATGCCAAAGCG
GACTACAACAATGTCCACGAGGTCGGGCCATCGACCAGTGCGGAGGGGGC
GCTGGCGCTCAATGCCGCCTGCAACTAGAAGCTTTCTAGACCAT
BS09215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-RA | 1362 | CG3548-PA | 1..1362 | 17..1378 | 6795 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-RA | 2218 | CG3548-RA | 102..1463 | 17..1378 | 6795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24600461..24600980 | 355..874 | 2585 | 99.8 | Plus |
2R | 25286936 | 2R | 24601109..24601612 | 875..1378 | 2520 | 100 | Plus |
2R | 25286936 | 2R | 24600048..24600387 | 17..356 | 1700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:20:44 has no hits.
BS09215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:48 Download gff for
BS09215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 1..1362 | 17..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:18 Download gff for
BS09215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 83..1448 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:55 Download gff for
BS09215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 102..1463 | 17..1378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:48 Download gff for
BS09215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 83..1448 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:45 Download gff for
BS09215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3548-RA | 102..1463 | 17..1378 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:45 Download gff for
BS09215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24600048..24600385 | 17..354 | 100 | -> | Plus |
2R | 24600461..24600980 | 355..874 | 99 | -> | Plus |
2R | 24601109..24601612 | 875..1378 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:55 Download gff for
BS09215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20487571..20487908 | 17..354 | 100 | -> | Plus |
arm_2R | 20487984..20488503 | 355..874 | 99 | -> | Plus |
arm_2R | 20488632..20489135 | 875..1378 | 100 | | Plus |
BS09215.pep Sequence
Translation from 16 to 1377
> BS09215.pep
MKLEELLTKGASSPPEDDDEDEKVELKPQKSSSATADEGAENAEDAAEDA
GEKEGAGGKKKGTRKKRSLNWEEAERGLLLEVIKSKVAFVENRSVDAKSI
KAKRLAWSQITKQFNALNFRHRLLEQIQVQWRSMKNSAKREHQQKHPKTE
ALEGMRMIEFLEEMQKDPVTSRSQTRSANTNGALKKELMDIDEDEDMPLA
ALPNSTNASEDTLQTSTIAIPSPPPSTAGGDGDSQQEGNPAQLPAQRRKR
TKAKQSPSGAKTETSGETGEENEKGVGPPRKRRQRNLSQAQSLLSDENEA
STNAAPSATPVADTNSQSLDLVAATEIEQKYKQDLFRLLKQARLAEIDYA
RREHEQKLRFEQMEQEVKMAYYRQEQDLKLRHMREEHDIRLRQQRREHEA
RLGIYSLKSGGLNGSIQDQSSAKCNAKADYNNVHEVGPSTSAEGALALNA
ACN*
BS09215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3548-PA | 453 | CG3548-PA | 1..453 | 1..453 | 2292 | 100 | Plus |