Clone BS09215 Report

Search the DGRC for BS09215

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG3548-RA
Protein status:BS09215.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09215.3prime Sequence

960 bp (894 high quality bases) assembled on 2006-01-29

> BS09215.3prime
ATGGTCTAGAAAGCTTCTAGTTGCAGGCGGCATTGAGCGCCAGCGCCCCC
TCCGCACTGGTCGATGGCCCGACCTCGTGGACATTGTTGTAGTCCGCTTT
GGCATTGCACTTTGCTGAACTCTGATCCTGTATGCTTCCGTTCAGGCCAC
CGCTCTTCAGCGAGTAGATCCCCAGGCGCGCCTCGTGCTCCCGTCGTTGC
TGCCGCAGCCGGATGTCGTGCTCCTCGCGCATGTGCCGCAGCTTGAGGTC
CTGCTCCTGCCGGTAGTAGGCCATCTTCACCTCCTGCTCCATCTGCTCGA
AGCGCAGCTTCTGCTCGTGTTCCCGCCGGGCGTAGTCGATTTCGGCCAGA
CGGGCCTGCTTGAGCAGCCTAAACAGGTCCTGCTTGTACTTCTGCTCTAT
CTCCGTGGCGGCGACCAAATCTAAGGACTGGCTATTTGTGTCTGCAACTG
GGGTGGCGCTCGGAGCTGCGTTGGTGGAGGCTTCGTTCTCGTCGGACAGC
AGCGACTGGGCCTGTGAGAGATTCCTTTGTCGCCGCTTTCGTGGTGGGCC
TACGCCCTTTTCGTTCTCCTCCCCCGTTTCGCCGGACGTTTCTGTCTTGG
CGCCCGAGGGCGACTGCTTGGCCTTGGTCCGCTTGCGTCGCTGGGCTGGC
AGCTGGGCGGGATTTCCCTCCTGCTGGGAGTCCCCGTCTCCGCCAGCAGT
GGAGGGCGGCGGCGAGGGGATGGCTATTGTGGAGGTCTGCAGCGTGTCCT
CGCTGGCGTTCGTAGAGTTGGGCAGAGCGGCCAGCGGCATGTCTTCGTCC
TCGTCGATGTCCATGAGCTCCTTCTTAAGAGCGCCGTTTGTGTTCGCGCT
GCGTGTCTGACTGCGCGAGGTGACCGGATCCTTCTGCATCTCCTCCCAGA
ACTNCATCATCCGCATGCCTTCCAGGGCCTCCCGTTTCGGATGCTTCTGC
TGGTGCTCCC

BS09215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-PA 1362 CG3548-RA 419..1362 960..17 4576 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 2218 CG3548-RA 520..1463 960..17 4634 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24601109..24601612 520..17 2520 100 Minus
2R 25286936 2R 24600541..24600980 960..521 2114 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 10:41:14 has no hits.

BS09215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:50 Download gff for BS09215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-PA 419..1362 17..960 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:29 Download gff for BS09215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-PA 419..1362 17..960 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:45 Download gff for BS09215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 520..1467 13..960 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:38 Download gff for BS09215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 520..1467 13..960 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:38 Download gff for BS09215.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24600541..24600980 521..960 98 -> Minus
2R 24601109..24601616 13..520 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:45 Download gff for BS09215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20488064..20488503 521..960 98 -> Minus
arm_2R 20488632..20489139 13..520 99   Minus

BS09215.5prime Sequence

982 bp (800 high quality bases) assembled on 2006-01-28

> BS09215.5prime
GAAGTTATCAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCT
CCTCTCCGCCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCG
CAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGA
TGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGG
GCACGCGCAAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTG
CTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGT
GGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCA
AGCAGTTCAATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAG
GTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAA
GCATCCGAAAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGG
AGGAGATGCAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCG
AACACAAACGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGA
AGACATGCCGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACA
CGCTGCAGACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCT
GGCGGAGACGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGC
CCAGCGACGCANGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGA
CAGAAACGTCCGGCGAAACGGGGGAGGAGAAACGAAAGGGCGTAGGCCCA
CCACGAAAGCGGCGACNAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTC
CGACGAGAACGAAGCCTCCACCAACGCAGCTCCGAGCGCCACCCCAGTTG
CAGACACNAATAGCCAGTCCTTTAGATTGGGG

BS09215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-PA 1362 CG3548-RA 1..815 17..831 4031 99.7 Plus
CG3548-PA 1362 CG3548-RA 819..956 835..972 652 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 2218 CG3548-RA 102..1062 17..978 4692 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24600461..24600980 355..874 2518 98.8 Plus
2R 25286936 2R 24600048..24600387 17..356 1700 100 Plus
2R 25286936 2R 24601109..24601206 875..972 479 99 Plus
Blast to na_te.dros performed on 2015-02-12 19:54:48 has no hits.

BS09215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:51 Download gff for BS09215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-PA 1..964 17..982 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:30 Download gff for BS09215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-PA 1..964 17..982 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:22:33 Download gff for BS09215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..1065 17..982 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:07:10 Download gff for BS09215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..1065 17..982 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:07:10 Download gff for BS09215.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24600048..24600385 17..354 100 -> Plus
2R 24600461..24600980 355..874 99 -> Plus
2R 24601109..24601214 875..982 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:22:33 Download gff for BS09215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20487571..20487908 17..354 100 -> Plus
arm_2R 20487984..20488503 355..874 99 -> Plus
arm_2R 20488632..20488737 875..982 96   Plus

BS09215.complete Sequence

1394 bp (1394 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636376

> BS09215.complete
GAAGTTATCAGTCGACATGAAACTGGAGGAGTTGCTGACCAAGGGAGCCT
CCTCTCCGCCGGAGGACGACGACGAGGACGAGAAGGTGGAGCTGAAGCCG
CAGAAGTCAAGCAGCGCCACCGCGGACGAGGGGGCGGAGAACGCGGAGGA
TGCGGCCGAGGATGCTGGCGAGAAGGAAGGCGCGGGTGGCAAGAAGAAGG
GCACGCGCAAGAAACGCTCCCTTAACTGGGAGGAGGCGGAAAGGGGGCTG
CTCCTTGAGGTCATCAAGTCCAAGGTGGCCTTCGTGGAGAACCGGAGCGT
GGACGCCAAGAGCATAAAGGCCAAGCGTCTGGCCTGGTCGCAGATCACCA
AGCAGTTCAATGCCCTTAACTTCCGCCATCGCCTGCTGGAGCAGATCCAG
GTGCAGTGGCGCAGCATGAAGAACTCCGCCAAGCGGGAGCACCAGCAGAA
GCATCCGAAAACGGAGGCCCTGGAAGGCATGCGGATGATTGAGTTCCTGG
AGGAGATGCAGAAGGATCCGGTCACCTCGCGCAGTCAGACACGCAGCGCG
AACACAAACGGCGCTCTTAAGAAGGAGCTCATGGACATCGACGAGGACGA
AGACATGCCGCTGGCCGCTCTGCCCAACTCTACGAACGCCAGCGAGGACA
CGCTGCAGACCTCCACAATAGCCATCCCCTCGCCGCCGCCCTCCACTGCT
GGCGGAGACGGGGACTCCCAGCAGGAGGGAAATCCCGCCCAGCTGCCAGC
CCAGCGACGCAAGCGGACCAAGGCCAAGCAGTCGCCCTCGGGCGCCAAGA
CAGAAACGTCCGGCGAAACGGGGGAGGAGAACGAAAAGGGCGTAGGCCCA
CCACGAAAGCGGCGACAAAGGAATCTCTCACAGGCCCAGTCGCTGCTGTC
CGACGAGAACGAAGCCTCCACCAACGCAGCTCCGAGCGCCACCCCAGTTG
CAGACACAAATAGCCAGTCCTTAGATTTGGTCGCCGCCACGGAGATAGAG
CAGAAGTACAAGCAGGACCTGTTTAGGCTGCTCAAGCAGGCCCGTCTGGC
CGAAATCGACTACGCCCGGCGGGAACACGAGCAGAAGCTGCGCTTCGAGC
AGATGGAGCAGGAGGTGAAGATGGCCTACTACCGGCAGGAGCAGGACCTC
AAGCTGCGGCACATGCGCGAGGAGCACGACATCCGGCTGCGGCAGCAACG
ACGGGAGCACGAGGCGCGCCTGGGGATCTACTCGCTGAAGAGCGGTGGCC
TGAACGGAAGCATACAGGATCAGAGTTCAGCAAAGTGCAATGCCAAAGCG
GACTACAACAATGTCCACGAGGTCGGGCCATCGACCAGTGCGGAGGGGGC
GCTGGCGCTCAATGCCGCCTGCAACTAGAAGCTTTCTAGACCAT

BS09215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 1362 CG3548-PA 1..1362 17..1378 6795 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-RA 2218 CG3548-RA 102..1463 17..1378 6795 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24600461..24600980 355..874 2585 99.8 Plus
2R 25286936 2R 24601109..24601612 875..1378 2520 100 Plus
2R 25286936 2R 24600048..24600387 17..356 1700 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:20:44 has no hits.

BS09215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:48 Download gff for BS09215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 1..1362 17..1378 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:18 Download gff for BS09215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 83..1448 17..1382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:55 Download gff for BS09215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..1463 17..1378 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:48 Download gff for BS09215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 83..1448 17..1382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:45 Download gff for BS09215.complete
Subject Subject Range Query Range Percent Splice Strand
CG3548-RA 102..1463 17..1378 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:45 Download gff for BS09215.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24600048..24600385 17..354 100 -> Plus
2R 24600461..24600980 355..874 99 -> Plus
2R 24601109..24601612 875..1378 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:55 Download gff for BS09215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20487571..20487908 17..354 100 -> Plus
arm_2R 20487984..20488503 355..874 99 -> Plus
arm_2R 20488632..20489135 875..1378 100   Plus

BS09215.pep Sequence

Translation from 16 to 1377

> BS09215.pep
MKLEELLTKGASSPPEDDDEDEKVELKPQKSSSATADEGAENAEDAAEDA
GEKEGAGGKKKGTRKKRSLNWEEAERGLLLEVIKSKVAFVENRSVDAKSI
KAKRLAWSQITKQFNALNFRHRLLEQIQVQWRSMKNSAKREHQQKHPKTE
ALEGMRMIEFLEEMQKDPVTSRSQTRSANTNGALKKELMDIDEDEDMPLA
ALPNSTNASEDTLQTSTIAIPSPPPSTAGGDGDSQQEGNPAQLPAQRRKR
TKAKQSPSGAKTETSGETGEENEKGVGPPRKRRQRNLSQAQSLLSDENEA
STNAAPSATPVADTNSQSLDLVAATEIEQKYKQDLFRLLKQARLAEIDYA
RREHEQKLRFEQMEQEVKMAYYRQEQDLKLRHMREEHDIRLRQQRREHEA
RLGIYSLKSGGLNGSIQDQSSAKCNAKADYNNVHEVGPSTSAEGALALNA
ACN*

BS09215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3548-PA 453 CG3548-PA 1..453 1..453 2292 100 Plus