Clone Sequence Records
BS09216.3prime Sequence
959 bp (908 high quality bases) assembled on 2006-01-29
> BS09216.3prime
ATGGTCTAGAAAGCTTCTAGCAGTAGCCCCTGTCGGGAACGCGTCGGCGT
GGAGCGCAACGGATGATGTTGTCCACGCGCAAGATCATCTCGGCAGCCTC
CGAGGCGGACATCAGAACTTGGCGCTTAACGGCGAACGACTCGGTGATGC
CCAGTTCACGGACATCGGCCACCTTGCCCAGCTCCATGTCCAGACCCAGA
GTCTGTTTGCCCTGGGCGTGGCCGGCACGCAGCTCCGAAACCAGTTGGGC
TGAATCGTAGCCAGCATTGTCGGCAATGGCCGTGGGCAGGGACAGCAGAG
CGCGGGCAAAGGCCTCGATAGCGATGGCCTCCTTGCCGGGTGTCTCGGCT
GCCTTCTTCAGCACGGCGGTGGCCATTAGAGCCTCGGAGCAGCCGCCACC
GAAAATGATGCGCGACTCCTTGACGGTGGCCGCCAGCACGCAGAGGGCGT
CGTGCAGGGAACGATCAGCCTCGTCCAGAATCTGTTGGGTAGCACCGCGG
ATCACGATGGTGCAGGCCTCGCCCAGCTTAACGCCGCTAAAACGCAACAG
CGTATCCTCGCCGATCATCACCTGTTCGATGACATCGCATTCGCCAAGCT
TCACCAGCGAGGGATTCTCAAAGGTGGAGACAATCTCGCCGCCGGTGCAA
TACGCCAGACGCTCGATGCCATCGAAATCGGCATGCTCGATGGACATTAC
ACGGGCATCGGCAAACAGCTGCTCCGGATAGTTGTAGATCAATTGCCGGT
TGATGAACACGTTGCACTTGTGCTTCAGGATCTTGTCCACCTTTTCCTTC
ATCTTCTCCTTCTCGGCCATCTCCAGGTCGGCGATCTTGGCCAGCGAATC
GACCTTGATGCTGCTGCCGAACACCTTAATCTTATCGGTGTCCATGGGCG
TGTTGGCAATCAGGATTCTGGGCATTCTCATACGCTGTGGCTGGTGCACG
CCGGGGCTT
BS09216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7033-PC | 1602 | CG7033-RC | 698..1602 | 921..17 | 4525 | 100 | Minus |
| CG7033-PA | 1608 | CG7033-RA | 704..1608 | 921..17 | 4525 | 100 | Minus |
| CG7033-PB | 1602 | CG7033-RB | 698..1602 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7033-RA | 2121 | CG7033-RA | 753..1691 | 955..17 | 4650 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9091420..9092038 | 921..303 | 3095 | 100 | Minus |
| X | 23542271 | X | 9092110..9092396 | 303..17 | 1435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:19:33 has no hits.
BS09216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:52 Download gff for
BS09216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-PB | 661..1602 | 17..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:31 Download gff for
BS09216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-PB | 661..1602 | 17..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:32 Download gff for
BS09216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 750..1700 | 6..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:13 Download gff for
BS09216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 750..1700 | 6..959 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:13 Download gff for
BS09216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9091151..9091177 | 932..959 | 96 | -> | Minus |
| X | 9091410..9092037 | 304..931 | 99 | -> | Minus |
| X | 9092110..9092405 | 6..303 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:32 Download gff for
BS09216.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8985184..8985210 | 932..959 | 96 | -> | Minus |
| arm_X | 8985443..8986070 | 304..931 | 99 | -> | Minus |
| arm_X | 8986143..8986438 | 6..303 | 98 | | Minus |
BS09216.5prime Sequence
796 bp (795 high quality bases) assembled on 2006-01-28
> BS09216.5prime
GAAGTTATCAGTCGACATGGAGATGTCCTTGAATCCCGTGCGCGTGCTCA
AGAATGAGGCGCAGGAGGAGAAGGCCGAGATGGCCCGTCTGTCCTCGTTC
ATTGGTGCCATCGCCATTGGTGATCTGGTAAAGAGCACGCTGGGTCCGAA
GGGTATGGACAAGATCCTGGTGGCCACCGGACGCAACGCCGGTCATGTTG
AGGTGACCAACGATGGTGCCACCATTCTGCGTGCCGTCGGTGTAGACAAT
CCGGCCGCCAAGATTCTGGTCGATATGTCGCGTGTGCAGGACGAGGAAGT
GGGCGATGGCACCACCTCGGTCACCGTTCTGGCATCGGAACTGCTGCGCG
AGGCGGAGAAACTAGTCGAACAGAAGCTGCACCCACAGATCATCGTCTCT
GGCTGGCGTCAGGCCACCCAGGTGGCACTGGAGGCGCTCACCGCCGCCGC
TCAGGACAACTCGTCCAGTGACGAGAAGTTCCGCAACGACCTGCTGAACA
TTGCCCGCACCACGCTCTCCTCGAAGATCCTGCACCAGCACAAAGACTTC
TTCGCCAATCTGGCGGTGGATGCTGTGATGCGTCTGAAGGGCTCCGGCGA
GCTCAAGTCCATACAGATCATCAAGAAATCGGGCGGCACACTGGGAGACT
CGTTCCTGGACGAGGGCTTCCTGCTGGACAAGAAGCCCGGCGTGCACCAG
CCACAGCGTATTGAGAATGCCAGAATCCTGATTGCCAACACGCCCATGGA
CACCGATAAGATTAAGGTGTTCGGCAGCAGCATCAAGGTCGATTCG
BS09216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7033-PA | 1608 | CG7033-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
| CG7033-PC | 1602 | CG7033-RC | 1..774 | 23..796 | 3870 | 100 | Plus |
| CG7033-PB | 1602 | CG7033-RB | 1..774 | 23..796 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7033-RA | 2121 | CG7033-RA | 84..863 | 17..796 | 3900 | 100 | Plus |
| T-cp1-RA | 1980 | CG5374-RA | 277..395 | 203..321 | 215 | 80.2 | Plus |
| T-cp1-RB | 1916 | CG5374-RB | 213..331 | 203..321 | 215 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9090487..9091177 | 19..709 | 3455 | 100 | Plus |
| X | 23542271 | X | 9091410..9091496 | 710..796 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:37:00 has no hits.
BS09216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:52 Download gff for
BS09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:33 Download gff for
BS09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:55:04 Download gff for
BS09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 76..863 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:29 Download gff for
BS09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 76..863 | 9..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:29 Download gff for
BS09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9090480..9091177 | 8..709 | 99 | -> | Plus |
| X | 9091410..9091496 | 710..796 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:55:04 Download gff for
BS09216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8984513..8985210 | 8..709 | 99 | -> | Plus |
| arm_X | 8985443..8985529 | 710..796 | 100 | | Plus |
BS09216.complete Sequence
1640 bp (1640 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636377
> BS09216.complete
GAAGTTATCAGTCGACATGGAGATGTCCTTGAATCCCGTGCGCGTGCTCA
AGAATGAGGCGCAGGAGGAGAAGGCCGAGATGGCCCGTCTGTCCTCGTTC
ATTGGTGCCATCGCCATTGGTGATCTGGTAAAGAGCACGCTGGGTCCGAA
GGGTATGGACAAGATCCTGGTGGCCACCGGACGCAACGCCGGTCATGTTG
AGGTGACCAACGATGGTGCCACCATTCTGCGTGCCGTCGGTGTAGACAAT
CCGGCCGCCAAGATTCTGGTCGATATGTCGCGTGTGCAGGACGAGGAAGT
GGGCGATGGCACCACCTCGGTCACCGTTCTGGCATCGGAACTGCTGCGCG
AGGCGGAGAAACTAGTCGAACAGAAGCTGCACCCACAGATCATCGTCTCT
GGCTGGCGTCAGGCCACCCAGGTGGCACTGGAGGCGCTCACCGCCGCCGC
TCAGGACAACTCGTCCAGTGACGAGAAGTTCCGCAACGACCTGCTGAACA
TTGCCCGCACCACGCTCTCCTCGAAGATCCTGCACCAGCACAAAGACTTC
TTCGCCAATCTGGCGGTGGATGCTGTGATGCGTCTGAAGGGCTCCGGCGA
GCTCAAGTCCATACAGATCATCAAGAAATCGGGCGGCACACTGGGAGACT
CGTTCCTGGACGAGGGCTTCCTGCTGGACAAGAAGCCCGGCGTGCACCAG
CCACAGCGTATTGAGAATGCCAGAATCCTGATTGCCAACACGCCCATGGA
CACCGATAAGATTAAGGTGTTCGGCAGCAGCATCAAGGTCGATTCGCTGG
CCAAGATCGCCGACCTGGAGATGGCCGAGAAGGAGAAGATGAAGGAAAAG
GTGGACAAGATCCTGAAGCACAAGTGCAACGTGTTCATCAACCGGCAATT
GATCTACAACTATCCGGAGCAGCTGTTTGCCGATGCCCGTGTAATGTCCA
TCGAGCATGCCGATTTCGATGGCATCGAGCGTCTGGCGTATTGCACCGGC
GGCGAGATTGTCTCCACCTTTGAGAATCCCTCGCTGGTGAAGCTTGGCGA
ATGCGATGTCATCGAACAGGTGATGATCGGCGAGGATACGCTGTTGCGTT
TTAGCGGCGTTAAGCTGGGCGAGGCCTGCACCATCGTGATCCGCGGTGCT
ACCCAACAGATTCTGGACGAGGCTGATCGTTCCCTGCACGACGCCCTCTG
CGTGCTGGCGGCCACCGTCAAGGAGTCGCGCATCATTTTCGGTGGCGGCT
GCTCCGAGGCTCTAATGGCCACCGCCGTGCTGAAGAAGGCAGCCGAGACA
CCCGGCAAGGAGGCCATCGCTATCGAGGCCTTTGCCCGCGCTCTGCTGTC
CCTGCCCACGGCCATTGCCGACAATGCTGGCTACGATTCAGCCCAACTGG
TTTCGGAGCTGCGTGCCGGCCACGCCCAGGGCAAACAGACTCTGGGTCTG
GACATGGAGCTGGGCAAGGTGGCCGATGTCCGTGAACTGGGCATCACCGA
GTCGTTCGCCGTTAAGCGCCAAGTTCTGATGTCCGCCTCGGAGGCTGCCG
AGATGATCTTGCGCGTGGACAACATCATCCGTTGCGCTCCACGCCGACGC
GTTCCCGACAGGGGCTACTGCTAGAAGCTTTCTAGACCAT
BS09216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7033-RA | 1608 | CG7033-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7033-RA | 2121 | CG7033-RA | 84..1691 | 17..1624 | 8040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9090487..9091177 | 19..709 | 3455 | 100 | Plus |
| X | 23542271 | X | 9091410..9092038 | 710..1338 | 3145 | 100 | Plus |
| X | 23542271 | X | 9092110..9092396 | 1338..1624 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:13:53 has no hits.
BS09216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:49 Download gff for
BS09216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 1..1608 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:19 Download gff for
BS09216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 76..1700 | 9..1635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:46 Download gff for
BS09216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 84..1691 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:49 Download gff for
BS09216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 76..1700 | 9..1635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:36 Download gff for
BS09216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7033-RA | 84..1691 | 17..1624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:36 Download gff for
BS09216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9090486..9091177 | 17..709 | 99 | -> | Plus |
| X | 9091410..9092037 | 710..1337 | 100 | -> | Plus |
| X | 9092110..9092396 | 1338..1624 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:46 Download gff for
BS09216.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8984519..8985210 | 17..709 | 99 | -> | Plus |
| arm_X | 8985443..8986070 | 710..1337 | 100 | -> | Plus |
| arm_X | 8986143..8986429 | 1338..1624 | 100 | | Plus |
BS09216.pep Sequence
Translation from 16 to 1623
> BS09216.pep
MEMSLNPVRVLKNEAQEEKAEMARLSSFIGAIAIGDLVKSTLGPKGMDKI
LVATGRNAGHVEVTNDGATILRAVGVDNPAAKILVDMSRVQDEEVGDGTT
SVTVLASELLREAEKLVEQKLHPQIIVSGWRQATQVALEALTAAAQDNSS
SDEKFRNDLLNIARTTLSSKILHQHKDFFANLAVDAVMRLKGSGELKSIQ
IIKKSGGTLGDSFLDEGFLLDKKPGVHQPQRIENARILIANTPMDTDKIK
VFGSSIKVDSLAKIADLEMAEKEKMKEKVDKILKHKCNVFINRQLIYNYP
EQLFADARVMSIEHADFDGIERLAYCTGGEIVSTFENPSLVKLGECDVIE
QVMIGEDTLLRFSGVKLGEACTIVIRGATQQILDEADRSLHDALCVLAAT
VKESRIIFGGGCSEALMATAVLKKAAETPGKEAIAIEAFARALLSLPTAI
ADNAGYDSAQLVSELRAGHAQGKQTLGLDMELGKVADVRELGITESFAVK
RQVLMSASEAAEMILRVDNIIRCAPRRRVPDRGYC*
BS09216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7033-PA | 535 | CG7033-PA | 1..535 | 1..535 | 2653 | 100 | Plus |
| T-cp1-PA | 557 | CG5374-PA | 21..538 | 24..525 | 734 | 34 | Plus |
| T-cp1-PB | 557 | CG5374-PB | 21..538 | 24..525 | 734 | 34 | Plus |
| Tcp-1eta-PA | 544 | CG8351-PA | 1..531 | 5..533 | 730 | 33.5 | Plus |
| Cct5-PB | 512 | CG8439-PB | 5..504 | 24..520 | 710 | 35.2 | Plus |
