Clone Sequence Records
BS09220.3prime Sequence
978 bp (791 high quality bases) assembled on 2006-01-29
> BS09220.3prime
ATGGTCTAGAAAGCTTCTATAAGGACGGCGGATCGTACTGGAAGCCCGGG
TTGTTGAACTTGAAGCGCGCAATCTCAAATTGCAGTGTCTCGAATTTGAT
GTCGGCCAGTCGCTTCAGCTGGTGCGCGATCTGCTGGGCATCGCTGCTGC
TCAGCGCGCTTGTCAGCGAACTGGGTTCCCGCTCCAGCTTTGTACTGTGC
AGCGGCGGCACGGCCTGCATGTTTGAAATGCAACGCGGCGCATTTTTAAC
TTCGTAGATAATTTGCTCCCTGGGCTGTGTGCGCATCCGCTTGACGGGCA
GCTCGCCGTTGATCAGCTTATTGCCGGAGGAGGCTGTGCCCGGATTGATG
ACGGGGGCAGCAGGCCTGCGGGATGTGACGTACTCGACGGCGTGCGGCTG
CACCGTTTGGGGATCCTCCTCGACATGCTCGAAGGATGTGTTGTCCACGA
CGATGGTGCGATAGGTGCCGCCACCCGTATTGACCGCCGTTGTGGACGCG
GTGATGCCGGTCTCCGCCAGATTCTCCTCCATCATGTCCTCGTGATCGAC
ATGCTCCTCCACCATCTCCTCCTCGTCCACCTCATCGTTGATTGCCTCTT
CAACGGCTGCCTGAAGTTCCTTTTGAAATGCCACCGAAGTACGCTGGCCC
AGTTCCTCCATCTCGTCGTCGTGCTCATCCTTTTCGGACTTCAGATTGAG
CATCGTTTCGCCGCCGGTGGTGGGCACCTTGCCAAAGAGATCGAGAGCGC
GCGTCTCCACGGAGGTCATCGAGATGTCCTTTTCCGTGGACAGAAGGCTG
CGTCTGTACTTGCAGCGAGTGGTGTTCTTCCAATCGTTTAGGCGCTTGCG
CCACTCCTCCGGCGTCAGTGTGGGTCGGGAGCTGCACTTGTTTAGCCGGT
CGGAGAGCTCCTTCCACTTTTTGGTCAAGTAATTCAGGTCATAGTCGCGC
GGCACTCGTCCGGTGGCGAAAATGGGGT
BS09220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18608-PA | 1041 | prod-RA | 80..1041 | 978..17 | 4760 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prod-RA | 1597 | CG18608-RA | 205..1166 | 978..17 | 4780 | 99.8 | Minus |
CG15107-RB | 1118 | CG15107-RB | 215..341 | 923..797 | 275 | 81.1 | Minus |
CG15107-RA | 1106 | CG15107-RA | 215..341 | 923..797 | 275 | 81.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18970130..18970730 | 246..846 | 2990 | 99.8 | Plus |
2R | 25286936 | 2R | 18969835..18970069 | 17..251 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 18970796..18970929 | 845..978 | 640 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:04:26 has no hits.
BS09220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:54 Download gff for
BS09220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-PA | 80..1041 | 17..978 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:36 Download gff for
BS09220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18608-PA | 80..1041 | 17..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:29:08 Download gff for
BS09220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 205..1166 | 17..978 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:50:26 Download gff for
BS09220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 205..1166 | 17..978 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:26 Download gff for
BS09220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18969835..18970067 | 17..249 | 100 | <- | Plus |
2R | 18970134..18970728 | 250..844 | 100 | <- | Plus |
2R | 18970796..18970929 | 845..978 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:29:08 Download gff for
BS09220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14857340..14857572 | 17..249 | 100 | <- | Plus |
arm_2R | 14857639..14858233 | 250..844 | 100 | <- | Plus |
arm_2R | 14858301..14858434 | 845..978 | 98 | | Plus |
BS09220.5prime Sequence
981 bp (807 high quality bases) assembled on 2006-01-28
> BS09220.5prime
GAAGTTATCAGTCGACATGAACGGCAAGATGGACCGCCGCAAGAAACGCA
CCTCATCGGAGCAGTACCAAATGTACATCGACATGATGGAGAGCGACCCC
ATTTTCGCCACCGGACGAGTGCCGCGCGACTATGACCTGAACTACTTGAC
CAAAAAGTGGAAGGAGCTCTCCGACCGGCTAAACAAGTGCAGCTCCGGAC
CCACACTGACGCCGGAGGAGTGGCGCAAGCGCCTAAACGATTGGAAGAAC
ACCACTCGCTGCAAGTACAGACGCAGCCTTCTGTCCACGGAAAAGGACAT
CTCGATGACCTCCGTGGAGACGCGCGCTCTCGATCTCTTTGGCAAGGTGC
CCACCACCGGCGGCGAAACGATGCTCAATCTGAAGTCCGAAAAGGATGAG
CACGACGACGAGATGGAGGAACTGGGCCAGCGTACTTCGGTGGCATTTCA
AAAGGAACTTCAGGCAGCCGTTGAAGAGGCAATCAACGATGAGGTGGACG
AGGAGGAGATGGTGGAGGAGCATGTCGATCACGAGGACATGATGGAGGAG
AATCTGGCGGAGACCGGCATCACCGCGTCCACAACGGCGGTCAATACGGG
TGGCGGCACCTATCGCACCATCGTCGTGGACAACACATCCTTCGAGCATG
TCGAGGAGGATCCCCAAACGGTGCAGCCGCACGCCGTCGAGTACGTCACA
TCCCGCAGGCCTGCTGCCCCCGTCATCAATCCGGGCACAGCCTCCTCCGG
CAATAAGCTGATCAACGGCGAGCTGCCCGTCAAGCGGATGCGCACACAGC
CCAGGGAGCAAATTATCTACGAAGTTAAGAATGCGCCGCGTTGCATTTCA
AACATGCAGGCCGTGCCGCCGCTGCACAGTACAAAGCTGGAGCGGGACCC
CAAGTCGCTGAACAGCGCGCTGAGCAGCAGCGATGCCCAGCAGATCGCGC
ACCAGCTGAGGCGACTGGCCGACATCAAATT
BS09220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18608-PA | 1041 | prod-RA | 1..965 | 17..981 | 4650 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prod-RA | 1597 | CG18608-RA | 126..1090 | 17..981 | 4720 | 99.3 | Plus |
CG15107-RB | 1118 | CG15107-RB | 215..341 | 151..277 | 290 | 81.9 | Plus |
CG15107-RA | 1106 | CG15107-RA | 215..341 | 151..277 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18970130..18970730 | 828..228 | 2990 | 99.8 | Minus |
2R | 25286936 | 2R | 18970796..18971008 | 229..17 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 18969911..18970069 | 981..823 | 690 | 95.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:13:02 has no hits.
BS09220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:56 Download gff for
BS09220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-PA | 1..965 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:38 Download gff for
BS09220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18608-PA | 1..965 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:19:59 Download gff for
BS09220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 123..1090 | 13..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:09 Download gff for
BS09220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 123..1090 | 13..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:09 Download gff for
BS09220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18970796..18971011 | 13..229 | 99 | | Minus |
2R | 18969911..18970067 | 825..981 | 95 | <- | Minus |
2R | 18970134..18970728 | 230..824 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:19:59 Download gff for
BS09220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14857416..14857572 | 825..981 | 95 | <- | Minus |
arm_2R | 14857639..14858233 | 230..824 | 100 | <- | Minus |
arm_2R | 14858301..14858516 | 13..229 | 99 | | Minus |
BS09220.complete Sequence
1073 bp (1073 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636378
> BS09220.complete
GAAGTTATCAGTCGACATGAACGGCAAGATGGACCGCCGCAAGAAACGCA
CCTCATCGGAGCAGTACCAAATGTACATCGACATGATGGAGAGCGACCCC
ATTTTCGCCACCGGACGAGTGCCGCGCGACTATGACCTGAACTACTTGAC
CAAAAAGTGGAAGGAGCTCTCCGACCGGCTAAACAAGTGCAGCTCCGGAC
CCACACTGACGCCGGAGGAGTGGCGCAAGCGCCTAAACGATTGGAAGAAC
ACCACTCGCTGCAAGTACAGACGCAGCCTTCTGTCCACGGAAAAGGACAT
CTCGATGACCTCCGTGGAGACGCGCGCTCTCGATCTCTTTGGCAAGGTGC
CCACCACCGGCGGCGAAACGATGCTCAATCTGAAGTCCGAAAAGGATGAG
CACGACGACGAGATGGAGGAACTGGGCCAGCGTACTTCGGTGGCATTTCA
AAAGGAACTTCAGGCAGCCGTTGAAGAGGCAATCAACGATGAGGTGGACG
AGGAGGAGATGGTGGAGGAGCATGTCGATCACGAGGACATGATGGAGGAG
AATCTGGCGGAGACCGGCATCACCGCGTCCACAACGGCGGTCAATACGGG
TGGCGGCACCTATCGCACCATCGTCGTGGACAACACATCCTTCGAGCATG
TCGAGGAGGATCCCCAAACGGTGCAGCCGCACGCCGTCGAGTACGTCACA
TCCCGCAGGCCTGCTGCCCCCGTCATCAATCCGGGCACAGCCTCCTCCGG
CAATAAGCTGATCAACGGCGAGCTGCCCGTCAAGCGGATGCGCACACAGC
CCAGGGAGCAAATTATCTACGAAGTTAAAAATGCGCCGCGTTGCATTTCA
AACATGCAGGCCGTGCCGCCGCTGCACAGTACAAAGCTGGAGCGGGAACC
CAGTTCGCTGACAAGCGCGCTGAGCAGCAGCGATGCCCAGCAGATCGCGC
ACCAGCTGAAGCGACTGGCCGACATCAAATTCGAGACACTGCAATTTGAG
ATTGCGCGCTTCAAGTTCAACAACCCGGGCTTCCAGTACGATCCGCCGTC
CTTATAGAAGCTTTCTAGACCAT
BS09220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prod-RA | 1041 | CG18608-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
CG15107-RB | 732 | CG15107-PB | 111..237 | 151..277 | 290 | 81.9 | Plus |
CG15107-RA | 720 | CG15107-PA | 111..237 | 151..277 | 290 | 81.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prod-RA | 1597 | CG18608-RA | 126..1166 | 17..1057 | 5205 | 100 | Plus |
CG15107-RB | 1118 | CG15107-RB | 215..341 | 151..277 | 290 | 81.9 | Plus |
CG15107-RA | 1106 | CG15107-RA | 215..341 | 151..277 | 290 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18970130..18970730 | 828..228 | 2990 | 99.8 | Minus |
2R | 25286936 | 2R | 18969835..18970069 | 1057..823 | 1175 | 100 | Minus |
2R | 25286936 | 2R | 18970796..18971008 | 229..17 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:43:26 has no hits.
BS09220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:50 Download gff for
BS09220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:21 Download gff for
BS09220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 141..1184 | 13..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:56 Download gff for
BS09220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 126..1166 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:50 Download gff for
BS09220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 141..1184 | 13..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:52 Download gff for
BS09220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
prod-RA | 126..1166 | 17..1057 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:52 Download gff for
BS09220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18969835..18970067 | 825..1057 | 100 | <- | Minus |
2R | 18970134..18970728 | 230..824 | 100 | <- | Minus |
2R | 18970796..18971008 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:56 Download gff for
BS09220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14857340..14857572 | 825..1057 | 100 | <- | Minus |
arm_2R | 14857639..14858233 | 230..824 | 100 | <- | Minus |
arm_2R | 14858301..14858513 | 17..229 | 100 | | Minus |
BS09220.pep Sequence
Translation from 16 to 1056
> BS09220.pep
MNGKMDRRKKRTSSEQYQMYIDMMESDPIFATGRVPRDYDLNYLTKKWKE
LSDRLNKCSSGPTLTPEEWRKRLNDWKNTTRCKYRRSLLSTEKDISMTSV
ETRALDLFGKVPTTGGETMLNLKSEKDEHDDEMEELGQRTSVAFQKELQA
AVEEAINDEVDEEEMVEEHVDHEDMMEENLAETGITASTTAVNTGGGTYR
TIVVDNTSFEHVEEDPQTVQPHAVEYVTSRRPAAPVINPGTASSGNKLIN
GELPVKRMRTQPREQIIYEVKNAPRCISNMQAVPPLHSTKLEREPSSLTS
ALSSSDAQQIAHQLKRLADIKFETLQFEIARFKFNNPGFQYDPPSL*
BS09220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
prod-PA | 346 | CG18608-PA | 1..346 | 1..346 | 1795 | 100 | Plus |
CG15107-PA | 239 | CG15107-PA | 1..237 | 5..343 | 414 | 33.6 | Plus |
CG15107-PB | 243 | CG15107-PB | 1..241 | 5..343 | 414 | 33 | Plus |