Clone BS09220 Report

Search the DGRC for BS09220

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptprod-RA
Protein status:BS09220.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09220.3prime Sequence

978 bp (791 high quality bases) assembled on 2006-01-29

> BS09220.3prime
ATGGTCTAGAAAGCTTCTATAAGGACGGCGGATCGTACTGGAAGCCCGGG
TTGTTGAACTTGAAGCGCGCAATCTCAAATTGCAGTGTCTCGAATTTGAT
GTCGGCCAGTCGCTTCAGCTGGTGCGCGATCTGCTGGGCATCGCTGCTGC
TCAGCGCGCTTGTCAGCGAACTGGGTTCCCGCTCCAGCTTTGTACTGTGC
AGCGGCGGCACGGCCTGCATGTTTGAAATGCAACGCGGCGCATTTTTAAC
TTCGTAGATAATTTGCTCCCTGGGCTGTGTGCGCATCCGCTTGACGGGCA
GCTCGCCGTTGATCAGCTTATTGCCGGAGGAGGCTGTGCCCGGATTGATG
ACGGGGGCAGCAGGCCTGCGGGATGTGACGTACTCGACGGCGTGCGGCTG
CACCGTTTGGGGATCCTCCTCGACATGCTCGAAGGATGTGTTGTCCACGA
CGATGGTGCGATAGGTGCCGCCACCCGTATTGACCGCCGTTGTGGACGCG
GTGATGCCGGTCTCCGCCAGATTCTCCTCCATCATGTCCTCGTGATCGAC
ATGCTCCTCCACCATCTCCTCCTCGTCCACCTCATCGTTGATTGCCTCTT
CAACGGCTGCCTGAAGTTCCTTTTGAAATGCCACCGAAGTACGCTGGCCC
AGTTCCTCCATCTCGTCGTCGTGCTCATCCTTTTCGGACTTCAGATTGAG
CATCGTTTCGCCGCCGGTGGTGGGCACCTTGCCAAAGAGATCGAGAGCGC
GCGTCTCCACGGAGGTCATCGAGATGTCCTTTTCCGTGGACAGAAGGCTG
CGTCTGTACTTGCAGCGAGTGGTGTTCTTCCAATCGTTTAGGCGCTTGCG
CCACTCCTCCGGCGTCAGTGTGGGTCGGGAGCTGCACTTGTTTAGCCGGT
CGGAGAGCTCCTTCCACTTTTTGGTCAAGTAATTCAGGTCATAGTCGCGC
GGCACTCGTCCGGTGGCGAAAATGGGGT

BS09220.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18608-PA 1041 prod-RA 80..1041 978..17 4760 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
prod-RA 1597 CG18608-RA 205..1166 978..17 4780 99.8 Minus
CG15107-RB 1118 CG15107-RB 215..341 923..797 275 81.1 Minus
CG15107-RA 1106 CG15107-RA 215..341 923..797 275 81.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18970130..18970730 246..846 2990 99.8 Plus
2R 25286936 2R 18969835..18970069 17..251 1175 100 Plus
2R 25286936 2R 18970796..18970929 845..978 640 98.5 Plus
Blast to na_te.dros performed on 2015-02-02 18:04:26 has no hits.

BS09220.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:54 Download gff for BS09220.3prime
Subject Subject Range Query Range Percent Splice Strand
prod-PA 80..1041 17..978 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:36 Download gff for BS09220.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18608-PA 80..1041 17..978 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:29:08 Download gff for BS09220.3prime
Subject Subject Range Query Range Percent Splice Strand
prod-RA 205..1166 17..978 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:50:26 Download gff for BS09220.3prime
Subject Subject Range Query Range Percent Splice Strand
prod-RA 205..1166 17..978 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:26 Download gff for BS09220.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18969835..18970067 17..249 100 <- Plus
2R 18970134..18970728 250..844 100 <- Plus
2R 18970796..18970929 845..978 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:29:08 Download gff for BS09220.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14857340..14857572 17..249 100 <- Plus
arm_2R 14857639..14858233 250..844 100 <- Plus
arm_2R 14858301..14858434 845..978 98   Plus

BS09220.5prime Sequence

981 bp (807 high quality bases) assembled on 2006-01-28

> BS09220.5prime
GAAGTTATCAGTCGACATGAACGGCAAGATGGACCGCCGCAAGAAACGCA
CCTCATCGGAGCAGTACCAAATGTACATCGACATGATGGAGAGCGACCCC
ATTTTCGCCACCGGACGAGTGCCGCGCGACTATGACCTGAACTACTTGAC
CAAAAAGTGGAAGGAGCTCTCCGACCGGCTAAACAAGTGCAGCTCCGGAC
CCACACTGACGCCGGAGGAGTGGCGCAAGCGCCTAAACGATTGGAAGAAC
ACCACTCGCTGCAAGTACAGACGCAGCCTTCTGTCCACGGAAAAGGACAT
CTCGATGACCTCCGTGGAGACGCGCGCTCTCGATCTCTTTGGCAAGGTGC
CCACCACCGGCGGCGAAACGATGCTCAATCTGAAGTCCGAAAAGGATGAG
CACGACGACGAGATGGAGGAACTGGGCCAGCGTACTTCGGTGGCATTTCA
AAAGGAACTTCAGGCAGCCGTTGAAGAGGCAATCAACGATGAGGTGGACG
AGGAGGAGATGGTGGAGGAGCATGTCGATCACGAGGACATGATGGAGGAG
AATCTGGCGGAGACCGGCATCACCGCGTCCACAACGGCGGTCAATACGGG
TGGCGGCACCTATCGCACCATCGTCGTGGACAACACATCCTTCGAGCATG
TCGAGGAGGATCCCCAAACGGTGCAGCCGCACGCCGTCGAGTACGTCACA
TCCCGCAGGCCTGCTGCCCCCGTCATCAATCCGGGCACAGCCTCCTCCGG
CAATAAGCTGATCAACGGCGAGCTGCCCGTCAAGCGGATGCGCACACAGC
CCAGGGAGCAAATTATCTACGAAGTTAAGAATGCGCCGCGTTGCATTTCA
AACATGCAGGCCGTGCCGCCGCTGCACAGTACAAAGCTGGAGCGGGACCC
CAAGTCGCTGAACAGCGCGCTGAGCAGCAGCGATGCCCAGCAGATCGCGC
ACCAGCTGAGGCGACTGGCCGACATCAAATT

BS09220.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18608-PA 1041 prod-RA 1..965 17..981 4650 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
prod-RA 1597 CG18608-RA 126..1090 17..981 4720 99.3 Plus
CG15107-RB 1118 CG15107-RB 215..341 151..277 290 81.9 Plus
CG15107-RA 1106 CG15107-RA 215..341 151..277 290 81.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18970130..18970730 828..228 2990 99.8 Minus
2R 25286936 2R 18970796..18971008 229..17 1065 100 Minus
2R 25286936 2R 18969911..18970069 981..823 690 95.6 Minus
Blast to na_te.dros performed on 2015-02-11 13:13:02 has no hits.

BS09220.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:56 Download gff for BS09220.5prime
Subject Subject Range Query Range Percent Splice Strand
prod-PA 1..965 17..981 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:38 Download gff for BS09220.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18608-PA 1..965 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:19:59 Download gff for BS09220.5prime
Subject Subject Range Query Range Percent Splice Strand
prod-RA 123..1090 13..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:34:09 Download gff for BS09220.5prime
Subject Subject Range Query Range Percent Splice Strand
prod-RA 123..1090 13..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:34:09 Download gff for BS09220.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18970796..18971011 13..229 99   Minus
2R 18969911..18970067 825..981 95 <- Minus
2R 18970134..18970728 230..824 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:19:59 Download gff for BS09220.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14857416..14857572 825..981 95 <- Minus
arm_2R 14857639..14858233 230..824 100 <- Minus
arm_2R 14858301..14858516 13..229 99   Minus

BS09220.complete Sequence

1073 bp (1073 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636378

> BS09220.complete
GAAGTTATCAGTCGACATGAACGGCAAGATGGACCGCCGCAAGAAACGCA
CCTCATCGGAGCAGTACCAAATGTACATCGACATGATGGAGAGCGACCCC
ATTTTCGCCACCGGACGAGTGCCGCGCGACTATGACCTGAACTACTTGAC
CAAAAAGTGGAAGGAGCTCTCCGACCGGCTAAACAAGTGCAGCTCCGGAC
CCACACTGACGCCGGAGGAGTGGCGCAAGCGCCTAAACGATTGGAAGAAC
ACCACTCGCTGCAAGTACAGACGCAGCCTTCTGTCCACGGAAAAGGACAT
CTCGATGACCTCCGTGGAGACGCGCGCTCTCGATCTCTTTGGCAAGGTGC
CCACCACCGGCGGCGAAACGATGCTCAATCTGAAGTCCGAAAAGGATGAG
CACGACGACGAGATGGAGGAACTGGGCCAGCGTACTTCGGTGGCATTTCA
AAAGGAACTTCAGGCAGCCGTTGAAGAGGCAATCAACGATGAGGTGGACG
AGGAGGAGATGGTGGAGGAGCATGTCGATCACGAGGACATGATGGAGGAG
AATCTGGCGGAGACCGGCATCACCGCGTCCACAACGGCGGTCAATACGGG
TGGCGGCACCTATCGCACCATCGTCGTGGACAACACATCCTTCGAGCATG
TCGAGGAGGATCCCCAAACGGTGCAGCCGCACGCCGTCGAGTACGTCACA
TCCCGCAGGCCTGCTGCCCCCGTCATCAATCCGGGCACAGCCTCCTCCGG
CAATAAGCTGATCAACGGCGAGCTGCCCGTCAAGCGGATGCGCACACAGC
CCAGGGAGCAAATTATCTACGAAGTTAAAAATGCGCCGCGTTGCATTTCA
AACATGCAGGCCGTGCCGCCGCTGCACAGTACAAAGCTGGAGCGGGAACC
CAGTTCGCTGACAAGCGCGCTGAGCAGCAGCGATGCCCAGCAGATCGCGC
ACCAGCTGAAGCGACTGGCCGACATCAAATTCGAGACACTGCAATTTGAG
ATTGCGCGCTTCAAGTTCAACAACCCGGGCTTCCAGTACGATCCGCCGTC
CTTATAGAAGCTTTCTAGACCAT

BS09220.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
prod-RA 1041 CG18608-PA 1..1041 17..1057 5205 100 Plus
CG15107-RB 732 CG15107-PB 111..237 151..277 290 81.9 Plus
CG15107-RA 720 CG15107-PA 111..237 151..277 290 81.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
prod-RA 1597 CG18608-RA 126..1166 17..1057 5205 100 Plus
CG15107-RB 1118 CG15107-RB 215..341 151..277 290 81.9 Plus
CG15107-RA 1106 CG15107-RA 215..341 151..277 290 81.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18970130..18970730 828..228 2990 99.8 Minus
2R 25286936 2R 18969835..18970069 1057..823 1175 100 Minus
2R 25286936 2R 18970796..18971008 229..17 1065 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:43:26 has no hits.

BS09220.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:50 Download gff for BS09220.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 1..1041 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:21 Download gff for BS09220.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 141..1184 13..1057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:56 Download gff for BS09220.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 126..1166 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:50 Download gff for BS09220.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 141..1184 13..1057 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:52 Download gff for BS09220.complete
Subject Subject Range Query Range Percent Splice Strand
prod-RA 126..1166 17..1057 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:52 Download gff for BS09220.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18969835..18970067 825..1057 100 <- Minus
2R 18970134..18970728 230..824 100 <- Minus
2R 18970796..18971008 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:56 Download gff for BS09220.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14857340..14857572 825..1057 100 <- Minus
arm_2R 14857639..14858233 230..824 100 <- Minus
arm_2R 14858301..14858513 17..229 100   Minus

BS09220.pep Sequence

Translation from 16 to 1056

> BS09220.pep
MNGKMDRRKKRTSSEQYQMYIDMMESDPIFATGRVPRDYDLNYLTKKWKE
LSDRLNKCSSGPTLTPEEWRKRLNDWKNTTRCKYRRSLLSTEKDISMTSV
ETRALDLFGKVPTTGGETMLNLKSEKDEHDDEMEELGQRTSVAFQKELQA
AVEEAINDEVDEEEMVEEHVDHEDMMEENLAETGITASTTAVNTGGGTYR
TIVVDNTSFEHVEEDPQTVQPHAVEYVTSRRPAAPVINPGTASSGNKLIN
GELPVKRMRTQPREQIIYEVKNAPRCISNMQAVPPLHSTKLEREPSSLTS
ALSSSDAQQIAHQLKRLADIKFETLQFEIARFKFNNPGFQYDPPSL*

BS09220.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
prod-PA 346 CG18608-PA 1..346 1..346 1795 100 Plus
CG15107-PA 239 CG15107-PA 1..237 5..343 414 33.6 Plus
CG15107-PB 243 CG15107-PB 1..241 5..343 414 33 Plus