Clone Sequence Records
BS09221.3prime Sequence
919 bp (806 high quality bases) assembled on 2006-01-29
> BS09221.3prime
ATGGTCTAGAAAGCTTCTAGTGAAGGTGTGTGCTCCAGTAGTTAATGATC
GGCTGATCGTGCGGCTGCACGCCAAGCACCTTCTTAAGTTTGCCCTGCAC
GCTGGTGGATTTGGCATGGTTGAGGCAGGTCACTTTGTTTTTCCACTCTT
CGATGAGCACCTTGGTCTGCTTGTTCAGCACGAGTTCTGTGAAGTTTTTC
TCCTCCACCGCCTTTAAAAGTTTCACCATAAGATCTGGCAATTTTCGTGG
CAGCTCTCCTGGCCATTTGACCGACACCTCGTGTCCGTTGACGTGTTTGT
CCAGAAAATCGATCCGATAAACGGAGCTACTGGCCATTGGCACGGCTATG
TCATTGGACACGGATATGATTTTGTACTCGGAGCTGATGGAGTGTTGATG
TTGGGCATCGATTCGCATTAGATTGTGCATGGGCTCGGGCAGGAGTTTCT
TCAGGCAGACCATGAAACGGAAGGTCTTTCTGGGATCACCTCTGACCACA
ATCTTCACCCCAGTCAAGGCACAATAGCAGACCGTGGCAAACTCCTCCTT
GCGGACGACACTCTTGAGATGGCGCAACGAGAAGAACTCCTCCAGATCGG
GATCGTCGATGCTCTCTATCATTGGCAGTGTGGAACTGTTGTAGGTGAGT
CGCTGTGCGGGAGGACGGCCACTACTTTGTGGCGGTAGCCACGGTAGGTT
GCCGAAGGTCACGTGCTCGGTGAGGAAGCGGGATCCGGCTAGCAGGAGCC
ACGAGAAGTGTGAGTGCAACTGGGCGAAGATGTGCTCCTCGCCTGTTAGC
TCCAGCAAGGCACGGGAAGTGGGCATCAAGAACTGAGCGCCGGACAGACG
CCTCTGTCGCTCTGAGTACGTCTGCTCCTCCGTCTCCTTGGTCTTTTTGG
CAGCTGCCTGCAGCTCCGA
BS09221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8616-PA | 1383 | CG8616-RA | 481..1383 | 919..17 | 4465 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BHD-RA | 1557 | CG8616-RA | 574..1476 | 919..17 | 4485 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7239115..7239793 | 919..241 | 3380 | 99.9 | Minus |
3L | 28110227 | 3L | 7240044..7240164 | 137..17 | 590 | 99.2 | Minus |
3L | 28110227 | 3L | 7239883..7239985 | 240..138 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:21:01 has no hits.
BS09221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:57 Download gff for
BS09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8616-PA | 482..1383 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:39 Download gff for
BS09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8616-PA | 482..1383 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:52 Download gff for
BS09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BHD-RA | 575..1476 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:39 Download gff for
BS09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BHD-RA | 575..1476 | 17..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:39 Download gff for
BS09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7239116..7239793 | 241..918 | 99 | -> | Minus |
3L | 7239883..7239985 | 138..240 | 100 | -> | Minus |
3L | 7240044..7240164 | 17..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:52 Download gff for
BS09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7232216..7232893 | 241..918 | 99 | -> | Minus |
arm_3L | 7232983..7233085 | 138..240 | 100 | -> | Minus |
arm_3L | 7233144..7233264 | 17..137 | 99 | | Minus |
BS09221.5prime Sequence
911 bp (821 high quality bases) assembled on 2006-01-28
> BS09221.5prime
GAAGTTATCAGTCGACATGAACGCCGTGATAGCGCTGTGCCACTTTTGCG
AGGCGCACGGTCCCTGCGCCATCTTCTGCACCCAGACACTGAGGGACACC
AAGCTGGAGGACCTGTCACTGGAACAGCAGACGCAAAAGACCTGCTCCGC
CTGCAATTACTCCATGGGCAAGAATAACAATGCGATCTACAGCAGGGACA
CGGAAAGCGGGGCCACATTCGTCAGCACCAAGGTGGCGGTGCTGCCGGAG
GTGGCCAGTCTGGTCAAGCAGGCGGCTGTGCTCAGTCTGAGCAATGGTAC
GGATGCCAGCAAGGATGGCGAGTTCGTGTTCTTTGGCGATTCGTCCAGGG
GTCACATCCTGAGTCACACCTTCCGAGTGAGCGACCTGCAGGCCCGCGGC
TACTCGCAGCTGTTCTCCATCATTGTGCTGATGAAGGACAAGTATTTCCT
GCTTAACATCAAGCCCTTTCTGGCGGAGCACCTGAAGAAGGTGTCGTCGG
AGCTGCAGGCAGCTGCCAAAAAGACCAAGGAGACGGAGGAGCAGACGTAC
TCAGAGCGACAGAGGCGTCTGTCCGGCGCTCAGTTCCTGATGCCCACTTC
CCGTGCCTTGCTGGAGCTAACAGGCGAGGAGCACATCTTCGCCCAGTTGC
ACTCACACTTCTCGTGGCTCCTGCTAGCCGGATCCCGCTTCCTCACCGAG
CACGTGACCTTCGGCAACCTACCGTGGCTACCGCCACAAAGTAGTGGCCG
TCCTCCCGCACAGCGACTCACCTACAACAGTTCCACACTGCCAATGATAG
AGAGCATCGACGATCCCGATCTGGAGGAGTTCTTCTCNGTGCGCCATCTC
AAGAGTGTCGTCCGCAAGGAGGAGTTTGCCACGGTCTGCTATTTGTGCTT
GACTGGGGTGA
BS09221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8616-PA | 1383 | CG8616-RA | 1..877 | 17..893 | 4316 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BHD-RA | 1557 | CG8616-RA | 94..988 | 17..911 | 4389 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7238635..7239529 | 17..911 | 4374 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:37:16 has no hits.
BS09221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:58 Download gff for
BS09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8616-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:41 Download gff for
BS09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8616-PA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:38 Download gff for
BS09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BHD-RA | 89..987 | 9..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:09 Download gff for
BS09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BHD-RA | 89..987 | 9..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:09 Download gff for
BS09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7238630..7239528 | 9..910 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:38 Download gff for
BS09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7231730..7232628 | 9..910 | 99 | | Plus |
BS09221.complete Sequence
1415 bp (1415 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636379
> BS09221.complete
GAAGTTATCAGTCGACATGAACGCCGTGATAGCGCTGTGCCACTTTTGCG
AGGCGCACGGTCCCTGCGCCATCTTCTGCACCCAGACACTGAGGGACACC
AAGCTGGAGGACCTGTCACTGGAACAGCAGACGCAAAAGACCTGCTCCGC
CTGCAATTACTCCATGGGCAAGAATAACAATGCGATCTACAGCAGGGACA
CGGAAAGCGGGGCCACATTCGTCAGCACCAAGGTGGCGGTGCTGCCGGAG
GTGGCCAGTCTGGTCAAGCAGGCGGCTGTGCTCAGTCTGAGCAATGGTAC
GGATGCCAGCAAGGATGGCGAGTTCGTGTTCTTTGGCGATTCGTCCAGGG
GTCACATCCTGAGTCACACCTTCCGAGTGAGCGACCTGCAGGCCCGCGGC
TACTCGCAGCTGTTCTCCATCATTGTGCTGATGAAGGACAAGTATTTCCT
GCTTAACATCAAGCCCTTTCTGGCGGAGCACCTGAAGAAGGTGTCGTCGG
AGCTGCAGGCAGCTGCCAAAAAGACCAAGGAGACGGAGGAGCAGACGTAC
TCAGAGCGACAGAGGCGTCTGTCCGGCGCTCAGTTCCTGATGCCCACTTC
CCGTGCCTTGCTGGAGCTAACAGGCGAGGAGCACATCTTCGCCCAGTTGC
ACTCACACTTCTCGTGGCTCCTGCTAGCCGGATCCCGCTTCCTCACCGAG
CACGTGACCTTCGGCAACCTACCGTGGCTACCGCCACAAAGTAGTGGCCG
TCCTCCCGCACAGCGACTCACCTACAACAGTTCCACACTGCCAATGATAG
AGAGCATCGACGATCCCGATCTGGAGGAGTTCTTCTCGTTGCGCCATCTC
AAGAGTGTCGTCCGCAAGGAGGAGTTTGCCACGGTCTGCTATTGTGCCTT
GACTGGGGTGAAGATTGTGGTCAGAGGTGATCCCAGAAAGACCTTCCGTT
TCATGGTCTGCCTGAAGAAACTCCTGCCCGAGCCCATGCACAATCTAATG
CGAATCGATGCCCAACATCAACACTCCATCAGCTCCGAGTACAAAATCAT
ATCCGTGTCCAATGACATAGCCGTGCCAATGGCCAGTAGCTCCGTTTATC
GGATCGATTTTCTGGACAAACACGTCAACGGACACGAGGTGTCGGTCAAA
TGGCCAGGAGAGCTGCCACGAAAATTGCCAGATCTTATGGTGAAACTTTT
AAAGGCGGTGGAGGAGAAAAACTTCACAGAACTCGTGCTGAACAAGCAGA
CCAAGGTGCTCATCGAAGAGTGGAAAAACAAAGTGACCTGCCTCAACCAT
GCCAAATCCACCAGCGTGCAGGGCAAACTTAAGAAGGTGCTTGGCGTGCA
GCCGCACGATCAGCCGATCATTAACTACTGGAGCACACACCTTCACTAGA
AGCTTTCTAGACCAT
BS09221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BHD-RA | 1383 | CG8616-PA | 1..1383 | 17..1399 | 6885 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BHD-RA | 1557 | CG8616-RA | 94..1476 | 17..1399 | 6885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7238635..7239793 | 17..1175 | 5780 | 99.9 | Plus |
3L | 28110227 | 3L | 7240044..7240164 | 1279..1399 | 590 | 99.2 | Plus |
3L | 28110227 | 3L | 7239883..7239985 | 1176..1278 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:18:33 has no hits.
BS09221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:51 Download gff for
BS09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8616-RA | 1..1383 | 17..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:23 Download gff for
BS09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8616-RA | 89..1476 | 9..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:45 Download gff for
BS09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BHD-RA | 94..1476 | 17..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:52 Download gff for
BS09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8616-RA | 89..1476 | 9..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:02 Download gff for
BS09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BHD-RA | 94..1476 | 17..1399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:02 Download gff for
BS09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7238635..7239793 | 17..1175 | 99 | -> | Plus |
3L | 7239883..7239985 | 1176..1278 | 100 | -> | Plus |
3L | 7240044..7240164 | 1279..1399 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:45 Download gff for
BS09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7231735..7232893 | 17..1175 | 99 | -> | Plus |
arm_3L | 7232983..7233085 | 1176..1278 | 100 | -> | Plus |
arm_3L | 7233144..7233264 | 1279..1399 | 99 | | Plus |
BS09221.pep Sequence
Translation from 16 to 1398
> BS09221.pep
MNAVIALCHFCEAHGPCAIFCTQTLRDTKLEDLSLEQQTQKTCSACNYSM
GKNNNAIYSRDTESGATFVSTKVAVLPEVASLVKQAAVLSLSNGTDASKD
GEFVFFGDSSRGHILSHTFRVSDLQARGYSQLFSIIVLMKDKYFLLNIKP
FLAEHLKKVSSELQAAAKKTKETEEQTYSERQRRLSGAQFLMPTSRALLE
LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQR
LTYNSSTLPMIESIDDPDLEEFFSLRHLKSVVRKEEFATVCYCALTGVKI
VVRGDPRKTFRFMVCLKKLLPEPMHNLMRIDAQHQHSISSEYKIISVSND
IAVPMASSSVYRIDFLDKHVNGHEVSVKWPGELPRKLPDLMVKLLKAVEE
KNFTELVLNKQTKVLIEEWKNKVTCLNHAKSTSVQGKLKKVLGVQPHDQP
IINYWSTHLH*
BS09221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BHD-PA | 460 | CG8616-PA | 1..460 | 1..460 | 2385 | 100 | Plus |