Clone BS09221 Report

Search the DGRC for BS09221

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptBHD-RA
Protein status:BS09221.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09221.3prime Sequence

919 bp (806 high quality bases) assembled on 2006-01-29

> BS09221.3prime
ATGGTCTAGAAAGCTTCTAGTGAAGGTGTGTGCTCCAGTAGTTAATGATC
GGCTGATCGTGCGGCTGCACGCCAAGCACCTTCTTAAGTTTGCCCTGCAC
GCTGGTGGATTTGGCATGGTTGAGGCAGGTCACTTTGTTTTTCCACTCTT
CGATGAGCACCTTGGTCTGCTTGTTCAGCACGAGTTCTGTGAAGTTTTTC
TCCTCCACCGCCTTTAAAAGTTTCACCATAAGATCTGGCAATTTTCGTGG
CAGCTCTCCTGGCCATTTGACCGACACCTCGTGTCCGTTGACGTGTTTGT
CCAGAAAATCGATCCGATAAACGGAGCTACTGGCCATTGGCACGGCTATG
TCATTGGACACGGATATGATTTTGTACTCGGAGCTGATGGAGTGTTGATG
TTGGGCATCGATTCGCATTAGATTGTGCATGGGCTCGGGCAGGAGTTTCT
TCAGGCAGACCATGAAACGGAAGGTCTTTCTGGGATCACCTCTGACCACA
ATCTTCACCCCAGTCAAGGCACAATAGCAGACCGTGGCAAACTCCTCCTT
GCGGACGACACTCTTGAGATGGCGCAACGAGAAGAACTCCTCCAGATCGG
GATCGTCGATGCTCTCTATCATTGGCAGTGTGGAACTGTTGTAGGTGAGT
CGCTGTGCGGGAGGACGGCCACTACTTTGTGGCGGTAGCCACGGTAGGTT
GCCGAAGGTCACGTGCTCGGTGAGGAAGCGGGATCCGGCTAGCAGGAGCC
ACGAGAAGTGTGAGTGCAACTGGGCGAAGATGTGCTCCTCGCCTGTTAGC
TCCAGCAAGGCACGGGAAGTGGGCATCAAGAACTGAGCGCCGGACAGACG
CCTCTGTCGCTCTGAGTACGTCTGCTCCTCCGTCTCCTTGGTCTTTTTGG
CAGCTGCCTGCAGCTCCGA

BS09221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8616-PA 1383 CG8616-RA 481..1383 919..17 4465 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
BHD-RA 1557 CG8616-RA 574..1476 919..17 4485 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7239115..7239793 919..241 3380 99.9 Minus
3L 28110227 3L 7240044..7240164 137..17 590 99.2 Minus
3L 28110227 3L 7239883..7239985 240..138 515 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:21:01 has no hits.

BS09221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:57 Download gff for BS09221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8616-PA 482..1383 17..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:39 Download gff for BS09221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8616-PA 482..1383 17..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:52 Download gff for BS09221.3prime
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 575..1476 17..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:39 Download gff for BS09221.3prime
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 575..1476 17..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:39 Download gff for BS09221.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7239116..7239793 241..918 99 -> Minus
3L 7239883..7239985 138..240 100 -> Minus
3L 7240044..7240164 17..137 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:52 Download gff for BS09221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7232216..7232893 241..918 99 -> Minus
arm_3L 7232983..7233085 138..240 100 -> Minus
arm_3L 7233144..7233264 17..137 99   Minus

BS09221.5prime Sequence

911 bp (821 high quality bases) assembled on 2006-01-28

> BS09221.5prime
GAAGTTATCAGTCGACATGAACGCCGTGATAGCGCTGTGCCACTTTTGCG
AGGCGCACGGTCCCTGCGCCATCTTCTGCACCCAGACACTGAGGGACACC
AAGCTGGAGGACCTGTCACTGGAACAGCAGACGCAAAAGACCTGCTCCGC
CTGCAATTACTCCATGGGCAAGAATAACAATGCGATCTACAGCAGGGACA
CGGAAAGCGGGGCCACATTCGTCAGCACCAAGGTGGCGGTGCTGCCGGAG
GTGGCCAGTCTGGTCAAGCAGGCGGCTGTGCTCAGTCTGAGCAATGGTAC
GGATGCCAGCAAGGATGGCGAGTTCGTGTTCTTTGGCGATTCGTCCAGGG
GTCACATCCTGAGTCACACCTTCCGAGTGAGCGACCTGCAGGCCCGCGGC
TACTCGCAGCTGTTCTCCATCATTGTGCTGATGAAGGACAAGTATTTCCT
GCTTAACATCAAGCCCTTTCTGGCGGAGCACCTGAAGAAGGTGTCGTCGG
AGCTGCAGGCAGCTGCCAAAAAGACCAAGGAGACGGAGGAGCAGACGTAC
TCAGAGCGACAGAGGCGTCTGTCCGGCGCTCAGTTCCTGATGCCCACTTC
CCGTGCCTTGCTGGAGCTAACAGGCGAGGAGCACATCTTCGCCCAGTTGC
ACTCACACTTCTCGTGGCTCCTGCTAGCCGGATCCCGCTTCCTCACCGAG
CACGTGACCTTCGGCAACCTACCGTGGCTACCGCCACAAAGTAGTGGCCG
TCCTCCCGCACAGCGACTCACCTACAACAGTTCCACACTGCCAATGATAG
AGAGCATCGACGATCCCGATCTGGAGGAGTTCTTCTCNGTGCGCCATCTC
AAGAGTGTCGTCCGCAAGGAGGAGTTTGCCACGGTCTGCTATTTGTGCTT
GACTGGGGTGA

BS09221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8616-PA 1383 CG8616-RA 1..877 17..893 4316 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
BHD-RA 1557 CG8616-RA 94..988 17..911 4389 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7238635..7239529 17..911 4374 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 23:37:16 has no hits.

BS09221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:02:58 Download gff for BS09221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8616-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:41 Download gff for BS09221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8616-PA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:38 Download gff for BS09221.5prime
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 89..987 9..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:09 Download gff for BS09221.5prime
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 89..987 9..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:09 Download gff for BS09221.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7238630..7239528 9..910 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:38 Download gff for BS09221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7231730..7232628 9..910 99   Plus

BS09221.complete Sequence

1415 bp (1415 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636379

> BS09221.complete
GAAGTTATCAGTCGACATGAACGCCGTGATAGCGCTGTGCCACTTTTGCG
AGGCGCACGGTCCCTGCGCCATCTTCTGCACCCAGACACTGAGGGACACC
AAGCTGGAGGACCTGTCACTGGAACAGCAGACGCAAAAGACCTGCTCCGC
CTGCAATTACTCCATGGGCAAGAATAACAATGCGATCTACAGCAGGGACA
CGGAAAGCGGGGCCACATTCGTCAGCACCAAGGTGGCGGTGCTGCCGGAG
GTGGCCAGTCTGGTCAAGCAGGCGGCTGTGCTCAGTCTGAGCAATGGTAC
GGATGCCAGCAAGGATGGCGAGTTCGTGTTCTTTGGCGATTCGTCCAGGG
GTCACATCCTGAGTCACACCTTCCGAGTGAGCGACCTGCAGGCCCGCGGC
TACTCGCAGCTGTTCTCCATCATTGTGCTGATGAAGGACAAGTATTTCCT
GCTTAACATCAAGCCCTTTCTGGCGGAGCACCTGAAGAAGGTGTCGTCGG
AGCTGCAGGCAGCTGCCAAAAAGACCAAGGAGACGGAGGAGCAGACGTAC
TCAGAGCGACAGAGGCGTCTGTCCGGCGCTCAGTTCCTGATGCCCACTTC
CCGTGCCTTGCTGGAGCTAACAGGCGAGGAGCACATCTTCGCCCAGTTGC
ACTCACACTTCTCGTGGCTCCTGCTAGCCGGATCCCGCTTCCTCACCGAG
CACGTGACCTTCGGCAACCTACCGTGGCTACCGCCACAAAGTAGTGGCCG
TCCTCCCGCACAGCGACTCACCTACAACAGTTCCACACTGCCAATGATAG
AGAGCATCGACGATCCCGATCTGGAGGAGTTCTTCTCGTTGCGCCATCTC
AAGAGTGTCGTCCGCAAGGAGGAGTTTGCCACGGTCTGCTATTGTGCCTT
GACTGGGGTGAAGATTGTGGTCAGAGGTGATCCCAGAAAGACCTTCCGTT
TCATGGTCTGCCTGAAGAAACTCCTGCCCGAGCCCATGCACAATCTAATG
CGAATCGATGCCCAACATCAACACTCCATCAGCTCCGAGTACAAAATCAT
ATCCGTGTCCAATGACATAGCCGTGCCAATGGCCAGTAGCTCCGTTTATC
GGATCGATTTTCTGGACAAACACGTCAACGGACACGAGGTGTCGGTCAAA
TGGCCAGGAGAGCTGCCACGAAAATTGCCAGATCTTATGGTGAAACTTTT
AAAGGCGGTGGAGGAGAAAAACTTCACAGAACTCGTGCTGAACAAGCAGA
CCAAGGTGCTCATCGAAGAGTGGAAAAACAAAGTGACCTGCCTCAACCAT
GCCAAATCCACCAGCGTGCAGGGCAAACTTAAGAAGGTGCTTGGCGTGCA
GCCGCACGATCAGCCGATCATTAACTACTGGAGCACACACCTTCACTAGA
AGCTTTCTAGACCAT

BS09221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
BHD-RA 1383 CG8616-PA 1..1383 17..1399 6885 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
BHD-RA 1557 CG8616-RA 94..1476 17..1399 6885 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7238635..7239793 17..1175 5780 99.9 Plus
3L 28110227 3L 7240044..7240164 1279..1399 590 99.2 Plus
3L 28110227 3L 7239883..7239985 1176..1278 515 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:18:33 has no hits.

BS09221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:51 Download gff for BS09221.complete
Subject Subject Range Query Range Percent Splice Strand
CG8616-RA 1..1383 17..1399 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:23 Download gff for BS09221.complete
Subject Subject Range Query Range Percent Splice Strand
CG8616-RA 89..1476 9..1399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:45 Download gff for BS09221.complete
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 94..1476 17..1399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:52 Download gff for BS09221.complete
Subject Subject Range Query Range Percent Splice Strand
CG8616-RA 89..1476 9..1399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:02 Download gff for BS09221.complete
Subject Subject Range Query Range Percent Splice Strand
BHD-RA 94..1476 17..1399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:02 Download gff for BS09221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7238635..7239793 17..1175 99 -> Plus
3L 7239883..7239985 1176..1278 100 -> Plus
3L 7240044..7240164 1279..1399 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:45 Download gff for BS09221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7231735..7232893 17..1175 99 -> Plus
arm_3L 7232983..7233085 1176..1278 100 -> Plus
arm_3L 7233144..7233264 1279..1399 99   Plus

BS09221.pep Sequence

Translation from 16 to 1398

> BS09221.pep
MNAVIALCHFCEAHGPCAIFCTQTLRDTKLEDLSLEQQTQKTCSACNYSM
GKNNNAIYSRDTESGATFVSTKVAVLPEVASLVKQAAVLSLSNGTDASKD
GEFVFFGDSSRGHILSHTFRVSDLQARGYSQLFSIIVLMKDKYFLLNIKP
FLAEHLKKVSSELQAAAKKTKETEEQTYSERQRRLSGAQFLMPTSRALLE
LTGEEHIFAQLHSHFSWLLLAGSRFLTEHVTFGNLPWLPPQSSGRPPAQR
LTYNSSTLPMIESIDDPDLEEFFSLRHLKSVVRKEEFATVCYCALTGVKI
VVRGDPRKTFRFMVCLKKLLPEPMHNLMRIDAQHQHSISSEYKIISVSND
IAVPMASSSVYRIDFLDKHVNGHEVSVKWPGELPRKLPDLMVKLLKAVEE
KNFTELVLNKQTKVLIEEWKNKVTCLNHAKSTSVQGKLKKVLGVQPHDQP
IINYWSTHLH*

BS09221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
BHD-PA 460 CG8616-PA 1..460 1..460 2385 100 Plus