Clone Sequence Records
BS09228.3prime Sequence
925 bp (862 high quality bases) assembled on 2006-01-29
> BS09228.3prime
ATGGTCTAGAAAGCTTCTATTTCTGGCTGGGAGTGTAGTACATGGAGTGC
AGGAATAGGCGAGTCACTTCTCCGATCACCGAACGGTCGGGTATGCTCTG
TGCCATGCCGTAGAGAGCCATCTTTCCAACGACGGGCTGGCCGGGATCCT
TCATGATCTCCGCCGTACAGCTGCGCACATCGGCAATGAATTTATCCGCG
ACTCCGGGCTGTGTGTGCATGTCCGTCACGCACAGGTGGATACCAGATGG
AAACTGCAGCGCATTTAGGTTCCAGCCCAGTTTGCACAGCGAATCCGATA
GCCGGAAAATGTCAAACACATTGGAACCCAGGGCAATCACTGAAGTAGCT
GGCTTGCCAAAGATAAAGATGCCATCGATGTCGCGAACGCCCCTCTCGAT
ATAGCGCGCCGTATCCACAATGCGCTTAGTGGCTTCCAGATAACCATCAT
AGCCAAAGCTCATCATGGTAGCCCAGCAGGCGGCGATAATACCTCCGGCA
CGGGAACCGTTGACTGTGGGAGAACCATACACGCCGCCAGGCCAGTCAGT
AGTCACAGTGAACTGATGGTCCTTGTACTTCTTGTCCGAGTAAAGGATCA
CCGATGATCCCTTGGGCGCGAAACCATACTTGTGGGTATCAGCGGAGATA
CTGGTCACTCCCTTGACCTCAAAGTCGAAGGGACGCAGCTTATAGCCGGC
GTTGCGGACCAAGGCCACCACAAAGCTGCCCAGGCAGGCGTCCACGTGCA
CGGGAATGTCGTACTTAACGCCCAAAGCGGCGATAGCTTCGATATCATCT
ATGGTTCCATAGGGGGAAGTTTGGAGCAGACCCAACCAGCAGAATCGTGT
TCCTATTAATGGCACGTTTGAACTTCTTAAATGTCACTTCGTAGGTCTCC
GGATCTACATCCACGGATCGCACGT
BS09228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8946-PB | 1638 | Sply-RB | 840..1638 | 815..17 | 3920 | 99.6 | Minus |
| CG8946-PA | 1638 | Sply-RA | 840..1638 | 815..17 | 3920 | 99.6 | Minus |
| CG8946-PB | 1638 | Sply-RB | 776..843 | 880..813 | 290 | 97 | Minus |
| CG8946-PA | 1638 | Sply-RA | 776..843 | 880..813 | 290 | 97 | Minus |
| CG8946-PB | 1638 | Sply-RB | 731..771 | 925..885 | 205 | 100 | Minus |
| CG8946-PA | 1638 | Sply-RA | 731..771 | 925..885 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 891..1799 | 925..16 | 4405 | 99.1 | Minus |
| Sply-RB | 2014 | CG8946-RB | 828..1736 | 925..16 | 4405 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089210..17089659 | 390..840 | 2160 | 99.1 | Plus |
| 2R | 25286936 | 2R | 17088719..17088946 | 16..243 | 1140 | 100 | Plus |
| 2R | 25286936 | 2R | 17089005..17089152 | 243..390 | 725 | 99.3 | Plus |
| 2R | 25286936 | 2R | 17089714..17089799 | 840..925 | 355 | 94.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:05:20 has no hits.
BS09228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:10 Download gff for
BS09228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-PA | 731..1638 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:10:58 Download gff for
BS09228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8946-PA | 731..1638 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:28 Download gff for
BS09228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 828..1741 | 12..925 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:32 Download gff for
BS09228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 828..1741 | 12..925 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:32 Download gff for
BS09228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17089714..17089799 | 840..925 | 96 | | Plus |
| 2R | 17088714..17088945 | 12..242 | 99 | <- | Plus |
| 2R | 17089005..17089151 | 243..389 | 99 | <- | Plus |
| 2R | 17089210..17089658 | 390..839 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:28 Download gff for
BS09228.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12976219..12976450 | 12..242 | 99 | <- | Plus |
| arm_2R | 12976510..12976656 | 243..389 | 99 | <- | Plus |
| arm_2R | 12976715..12977163 | 390..839 | 99 | <- | Plus |
| arm_2R | 12977219..12977304 | 840..925 | 96 | | Plus |
BS09228.5prime Sequence
949 bp (814 high quality bases) assembled on 2006-01-28
> BS09228.5prime
GAAGTTATCAGTCGACATGCGTCCGTTCTCCGGCAGCGATTGCCTTAAGC
CCGTCACCGAGGGCATCAACCGGGCGTTCGGCGCCAAGGAGCCTTGGCAG
GTCGCCACCATCACGGCCACCACGGTGCTGGGAGGCGTCTGGCTCTGGAC
TGTGATCTGCCAGGATGAAAATCTTTACATTCGTGGCAAGCGTCAGTTCT
TTAAGTTTGCCAAGAAGATTCCAGCCGTGCGTCGTCAGGTGGAGACTGAA
TTGGCCAAGGCCAAAAACGACTTCGAGACGGAAATCAAAAAGAGCAACGC
CCACCTTACCTACTCGGAAACTCTGCCCGAGAAGGGACTCAGCAAGGAGG
AGATCCTCCGACTGGTGGATGAGCACCTGAAGACTGGTCACTACAACTGG
CGTGATGGTCGTGTATCTGGCGCGGTCTACGGCTACAAGCCTGATCTGGT
GGAGCTCGTCACTGAAGTGTACGGCAAGGCCTCCTACACCAATCCCTTGC
ACGCAGATCTTTTCCCGGGAGTTTGCAAAATGGAGGCGGAGGTAGTGCGC
ATGGCATGCAACCTGTTCCATGGAAACTCAGCCAGCTGTGGAACCATGAC
CACCGGCGGCACCGAATCCATTGTAATGGCCATGAAGGCGTACAGGGATT
TCGCTAGAGAGTACAAGGGAATCACCAGGCCAAACATCGTGGTGCCTAAG
ACGGTCCACGCGGCCTTCGACAAGGGTGGTCAGTACTTTAATATCCACGT
GCGATCCGTGGATGTAGATCCGGAGACCTACGAAGTGGACATTAAGAAGT
TCAAACGTGCCATTAATAGGAACACGATTCTGCTGGTTGGGTCTGCTCCA
AACTTCCCCTATGGAACCATAGATGATATCGAAGCTATCGCCGCTTTGGG
CGTTAAGTACGACATTCCCGTGCACGTGGACGCCTGCCTGGGCAGCTTT
BS09228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8946-PB | 1638 | Sply-RB | 1..933 | 17..949 | 4490 | 99.2 | Plus |
| CG8946-PA | 1638 | Sply-RA | 1..933 | 17..949 | 4490 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 161..1093 | 17..949 | 4560 | 99.2 | Plus |
| Sply-RB | 2014 | CG8946-RB | 98..1030 | 17..949 | 4560 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089714..17090375 | 832..171 | 3280 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17091359..17091512 | 170..17 | 740 | 98.7 | Minus |
| 2R | 25286936 | 2R | 17089542..17089659 | 949..832 | 545 | 97.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:54:24 has no hits.
BS09228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:11 Download gff for
BS09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:00 Download gff for
BS09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8946-PA | 1..933 | 17..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:17 Download gff for
BS09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..1030 | 9..949 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:32:37 Download gff for
BS09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..1030 | 9..949 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:32:37 Download gff for
BS09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17089542..17089658 | 833..949 | 97 | <- | Minus |
| 2R | 17089714..17090375 | 171..832 | 99 | <- | Minus |
| 2R | 17091359..17091516 | 9..170 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:17 Download gff for
BS09228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12977047..12977163 | 833..949 | 97 | <- | Minus |
| arm_2R | 12977219..12977880 | 171..832 | 99 | <- | Minus |
| arm_2R | 12978864..12979021 | 9..170 | 96 | | Minus |
BS09228.complete Sequence
1670 bp (1670 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636380
> BS09228.complete
GAAGTTATCAGTCGACATGCGTCCGTTCTCCGGCAGCGATTGCCTTAAGC
CCGTCACCGAGGGCATCAACCGGGCGTTCGGCGCCAAGGAGCCTTGGCAG
GTCGCCACCATCACGGCCACCACGGTGCTGGGAGGCGTCTGGCTCTGGAC
TGTGATCTGCCAGGATGAAAATCTTTACATTCGTGGCAAGCGTCAGTTCT
TTAAGTTTGCCAAGAAGATTCCAGCCGTGCGTCGTCAGGTGGAGACTGAA
TTGGCCAAGGCCAAAAACGACTTCGAGACGGAAATCAAAAAGAGCAACGC
CCACCTTACCTACTCGGAAACTCTGCCCGAGAAGGGACTCAGCAAGGAGG
AGATCCTCCGACTGGTGGATGAGCACCTGAAGACTGGTCACTACAACTGG
CGTGATGGTCGTGTATCTGGCGCGGTCTACGGCTACAAGCCTGATCTGGT
GGAGCTCGTCACTGAAGTGTACGGCAAGGCCTCCTACACCAATCCCTTGC
ACGCAGATCTTTTCCCGGGAGTTTGCAAAATGGAGGCGGAGGTAGTGCGC
ATGGCATGCAACCTGTTCCATGGAAACTCAGCCAGCTGTGGAACCATGAC
CACCGGCGGCACCGAATCCATTGTAATGGCCATGAAGGCGTACAGGGATT
TCGCTAGAGAGTACAAGGGAATCACCAGGCCAAACATCGTGGTGCCTAAG
ACGGTCCACGCGGCCTTCGACAAGGGTGGTCAGTACTTTAATATCCACGT
GCGATCCGTGGATGTAGATCCGGAGACCTACGAAGTGGACATTAAGAAGT
TCAAACGTGCCATTAATAGGAACACGATTCTGCTGGTTGGGTCTGCTCCA
AACTTCCCCTATGGAACCATAGATGATATCGAAGCTATCGCCGCTTTGGG
CGTTAAGTACGACATTCCCGTGCACGTGGACGCCTGCCTGGGCAGCTTTG
TGGTGGCCTTGGTCCGCAACGCCGGCTATAAGCTGCGTCCCTTCGACTTT
GAGGTCAAGGGAGTGACCAGTATCTCCGCTGATACCCACAAGTATGGTTT
CGCGCCCAAGGGATCATCGGTGATCCTTTACTCGGACAAGAAGTACAAGG
ACCATCAGTTCACTGTGACTACTGACTGGCCTGGCGGCGTGTATGGTTCT
CCCACAGTCAACGGTTCCCGTGCCGGAGGTATTATCGCCGCCTGCTGGGC
TACCATGATGAGCTTTGGCTATGATGGTTATCTGGAAGCCACTAAGCGCA
TTGTGGATACGGCGCGCTATATCGAGAGGGGCGTTCGCGACATCGATGGC
ATCTTTATCTTTGGCAAGCCAGCTACTTCAGTGATTGCCCTGGGTTCCAA
TGTGTTTGACATTTTCCGGCTATCGGATTCGCTGTGCAAACTGGGCTGGA
ACCTAAATGCGCTGCAGTTTCCATCTGGTATCCACCTGTGCGTGACGGAC
ATGCACACACAGCCCGGAGTCGCGGATAAATTCATTGCCGATGTGCGCAG
CTGTACGGCGGAGATCATGAAGGATCCCGGCCAGCCCGTCGTTGGAAAGA
TGGCTCTCTACGGCATGGCACAGAGCATACCCGACCGTTCGGTGATCGGA
GAAGTGACTCGCCTATTCCTGCACTCCATGTACTACACTCCCAGCCAGAA
ATAGAAGCTTTCTAGACCAT
BS09228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 1638 | CG8946-PA | 1..1638 | 17..1654 | 8070 | 99.5 | Plus |
| Sply-RB | 1638 | CG8946-PB | 1..1638 | 17..1654 | 8070 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 161..1799 | 17..1655 | 8075 | 99.5 | Plus |
| Sply-RB | 2014 | CG8946-RB | 98..1736 | 17..1655 | 8075 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089714..17090375 | 832..171 | 3280 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17089210..17089659 | 1281..832 | 2205 | 99.3 | Minus |
| 2R | 25286936 | 2R | 17088719..17088946 | 1655..1428 | 1140 | 100 | Minus |
| 2R | 25286936 | 2R | 17091359..17091512 | 170..17 | 740 | 98.7 | Minus |
| 2R | 25286936 | 2R | 17089005..17089152 | 1428..1281 | 725 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:16:58 has no hits.
BS09228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:40 Download gff for
BS09228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RA | 1..1638 | 17..1654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:09 Download gff for
BS09228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RA | 154..1803 | 9..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:14 Download gff for
BS09228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 98..1729 | 17..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:40 Download gff for
BS09228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RA | 154..1803 | 9..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:06 Download gff for
BS09228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 98..1729 | 17..1648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:06 Download gff for
BS09228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17089005..17089151 | 1282..1428 | 99 | <- | Minus |
| 2R | 17088726..17088945 | 1429..1648 | 100 | <- | Minus |
| 2R | 17089210..17089658 | 833..1281 | 99 | <- | Minus |
| 2R | 17089714..17090375 | 171..832 | 99 | <- | Minus |
| 2R | 17091359..17091512 | 17..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:14 Download gff for
BS09228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12978864..12979017 | 17..170 | 98 | | Minus |
| arm_2R | 12976231..12976450 | 1429..1648 | 100 | <- | Minus |
| arm_2R | 12976510..12976656 | 1282..1428 | 99 | <- | Minus |
| arm_2R | 12976715..12977163 | 833..1281 | 99 | <- | Minus |
| arm_2R | 12977219..12977880 | 171..832 | 99 | <- | Minus |
BS09228.pep Sequence
Translation from 16 to 1653
> BS09228.pep
MRPFSGSDCLKPVTEGINRAFGAKEPWQVATITATTVLGGVWLWTVICQD
ENLYIRGKRQFFKFAKKIPAVRRQVETELAKAKNDFETEIKKSNAHLTYS
ETLPEKGLSKEEILRLVDEHLKTGHYNWRDGRVSGAVYGYKPDLVELVTE
VYGKASYTNPLHADLFPGVCKMEAEVVRMACNLFHGNSASCGTMTTGGTE
SIVMAMKAYRDFAREYKGITRPNIVVPKTVHAAFDKGGQYFNIHVRSVDV
DPETYEVDIKKFKRAINRNTILLVGSAPNFPYGTIDDIEAIAALGVKYDI
PVHVDACLGSFVVALVRNAGYKLRPFDFEVKGVTSISADTHKYGFAPKGS
SVILYSDKKYKDHQFTVTTDWPGGVYGSPTVNGSRAGGIIAACWATMMSF
GYDGYLEATKRIVDTARYIERGVRDIDGIFIFGKPATSVIALGSNVFDIF
RLSDSLCKLGWNLNALQFPSGIHLCVTDMHTQPGVADKFIADVRSCTAEI
MKDPGQPVVGKMALYGMAQSIPDRSVIGEVTRLFLHSMYYTPSQK*
BS09228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-PA | 545 | CG8946-PA | 1..545 | 1..545 | 2876 | 100 | Plus |
| Sply-PB | 545 | CG8946-PB | 1..545 | 1..545 | 2876 | 100 | Plus |
