Clone Sequence Records
BS09229.3prime Sequence
871 bp (823 high quality bases) assembled on 2006-01-29
> BS09229.3prime
ATGGTCTAGAAAGCTTTCACATAAATCGTGCTTTATTCAGGTCACACTTT
TTGGAGCGCCCATCCGTAGGAATCTTTCCCCGTGCATTCATCTCCACACG
AGCCTGTTCCCGCAGCTCTGCCTTCCGCATTCGACGCTCTTTGCGTGACT
CCAGAGCATTATTAAAGTACCGATCCCTGAAGTCCTGCGAGGGCGTTGGC
ACCTGTTTTATGCTGCACAATAAGGGTTCTGTTGGACTATACTCGAAACA
CTTTTCATAGGTGAGTAGCCGCCTAGCTGTATTCCCAGTCAATTGCTGCT
CAGAGTTAGCTATCAGGCTCAGATGCTGATGCTGTGGCAGCATCTTCGGG
TCGTAGTCCTCGCTGTGAAAGGGTATCCAGCAGACAAGACGTCCTCCCAG
TTTTAGGTGCCTCGCAGAGAACTCGAGAAGATCCCCATAGAGACTCTGCA
AGGAATAGTGCGACGTTGATGGGTAATGCACCATGCTGTCACTTCTAGTG
TTGGCCTTTACGCTAGCCTTTTTCTCCACCTTTTCCGTGGCCTCTCTTAT
TCCATAGGGAGGATCTGTTATTATGCAGTCGAACGAGATGCGGGAATGCC
ACACCGGGTTGGAGAAATCGGCCACCACCACATCCATGTAGCGATCAGCG
CAGCCGTACTGCTTCAAGTTGGCCCGAATGCTCTCGTCCTTCTCCCGCAC
TTTTTGGGTTATCCGGCTCGGCCGGCAGCGGGCGTGCACCATCATGTAGT
CTATGTCCGCTCCCAGGACATACCCGCCCCACTTGGCGGCGCTTACCAAA
AGCGAGCCCGTTCCCACAAACGGATCAAATACCAGATCCCCATTGCGTAC
CATCGCTTGGGTGGCCATTAG
BS09229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1074-PA | 1467 | CG1074-RA | 613..1467 | 871..17 | 4225 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1074-RA | 1687 | CG1074-RA | 709..1563 | 871..17 | 4245 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4435507..4436051 | 561..17 | 2710 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4435141..4435450 | 871..562 | 1535 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-08 13:26:01 has no hits.
BS09229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:13 Download gff for
BS09229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-PA | 613..1467 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:01 Download gff for
BS09229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-PA | 613..1467 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:00 Download gff for
BS09229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-RA | 709..1566 | 12..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:18 Download gff for
BS09229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-RA | 709..1566 | 12..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:18 Download gff for
BS09229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4435141..4435450 | 562..871 | 99 | -> | Minus |
| 3R | 4435507..4436052 | 16..561 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:00 Download gff for
BS09229.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 260863..261172 | 562..871 | 99 | -> | Minus |
| arm_3R | 261229..261774 | 16..561 | 99 | <- | Minus |
BS09229.5prime Sequence
948 bp (732 high quality bases) assembled on 2006-01-28
> BS09229.5prime
GAAGTTATCAGTCGTCATGGTCAACTGGAGGAAGTTTATCTTGTGGTTCG
CCCAGGAGCATGTCGACTTTCGCGTGCAGGAGTTTGATTCGCTGGTCAAA
ATGTTTGGACTTCAGGTCCGGCGGCTTACAGAACACACCAGGAAACCATT
TTGGTTGGTCGAATTTCGGGACACGGATACTGCGTTGCTATATGCATCCA
GGTCCGTTTCGTTGCGCGCCATGTTCGAGCTCTACGCCCACTCCAACAAA
TTACCCGAGTTTCACCAGAGGCTACGGAATCATGTTACCGCGAACTGGCA
TTCGCTTGCGGAATACTTTCGGGTGGATGCCAGTTTTAAGATCGTTGTGG
AGACCTACAACAAGCACTTCAGCCAGAGGGAAAAGGTTGAGAAAATCGAG
TCCATGGATTACCTGCCAATAGAGGGAACGGTCAATCTGGAGAAACCCGT
GGTGGAGTGGTGGTACATCGAGTTTTGGGGCTTGGATCCAACGGCTGTGC
CACCTGAGCCGGAGGACATTCTGTTTGGTCGGCTGATGGCCCATGGTCAG
CGGCATTTGATCAAGGAGCTTTCGCTGAAGCATCGTAAGTTTATCGGTAA
CACCAGCATGGACGCCCAGCTGAGCCTGCTAATGGCCAACCAAGCGATGG
TACGCAATGGGGATCTGGTATTTGATCCGTTTGTGGGAACGGGCTCGCTT
TTGGTAAGCGCCGCCAAGTGGGGCGGGTATGTCCTGGGAGCGGACATAGA
CTACATGATGGTGCACGCCCGCTGCCGGCCGAGCCGGATAACCCAAAAAG
TGCGGGAGAAGGACGAGAGCATTCGGGCCAACTTGAAGCAGTACGGCTGC
GCTGATCGCTACATGGATGTGGTGGTGGCCGATTTCTCCAACCCCGTGTG
GCATTTCCGCATCTCGTTCGACTGCATAATAACAGATCCTCCCTATGG
BS09229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1074-PA | 1467 | CG1074-RA | 1..932 | 17..948 | 4610 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1074-RA | 1687 | CG1074-RA | 96..1028 | 16..948 | 4635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4434654..4435450 | 142..938 | 3955 | 99.7 | Plus |
| 3R | 32079331 | 3R | 4434060..4434186 | 16..142 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:08:16 has no hits.
BS09229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:14 Download gff for
BS09229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:03 Download gff for
BS09229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:18:32 Download gff for
BS09229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-RA | 89..1028 | 7..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:02 Download gff for
BS09229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-RA | 89..1028 | 7..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:02 Download gff for
BS09229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4434057..4434186 | 14..142 | 98 | -> | Plus |
| 3R | 4434655..4435450 | 143..938 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:18:32 Download gff for
BS09229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 259779..259908 | 14..142 | 98 | -> | Plus |
| arm_3R | 260377..261172 | 143..938 | 99 | | Plus |
BS09229.complete Sequence
1499 bp assembled on 2008-08-15
GenBank Submission: FJ636381
> BS09229.complete
GAAGTTATCAGTCGTCATGGTCAACTGGAGGAAGTTTATCTTGTGGTTCG
CCCAGGAGCATGTCGACTTTCGCGTGCAGGAGTTTGATTCGCTGGTCAAA
ATGTTTGGACTTCAGGTCCGGCGGCTTACAGAACACACCAGGAAACCATT
TTGGTTGGTCGAATTTCGGGACACGGATACTGCGTTGCTATATGCATCCA
GGTCCGTTTCGTTGCGCGCCATGTTCGAGCTCTACGCCCACTCCAACAAA
TTACCCGAGTTTCACCAGAGGCTACGGAATCATGTTACCGCGAACTGGCA
TTCGCTTGCGGAATACTTTCGGGTGGATGCCAGTTTTAAGATCGTTGTGG
AGACCTACAACAAGCACTTCAGCCAGAGGGAAAAGGTTGAGAAAATCGAG
TCCATGGATTACCTGCCAATAGAGGGAACGGTCAATCTGGAGAAACCCGT
GGTGGAGTGGTGGTACATCGAGTTTTGGGGCTTGGATCCAACGGCTGTGC
CACCTGAGCCGGAGGACATTCTGTTTGGTCGGCTGATGGCCCATGGTCAG
CGGCATTTGATCAAGGAGCTTTCGCTGAAGCATCGTAAGTTTATCGGTAA
CACCAGCATGGACGCCCAGCTGAGCCTGCTAATGGCCAACCAAGCGATGG
TACGCAATGGGGATCTGGTATTTGATCCGTTTGTGGGAACGGGCTCGCTT
TTGGTAAGCGCCGCCAAGTGGGGCGGGTATGTCCTGGGAGCGGACATAGA
CTACATGATGGTGCACGCCCGCTGCCGGCCGAGCCGGATAACCCAAAAAG
TGCGGGAGAAGGACGAGAGCATTCGGGCCAACTTGAAGCAGTACGGCTGC
GCTGATCGCTACATGGATGTGGTGGTGGCCGATTTCTCCAACCCGGTGTG
GCATTCCCGCATCTCGTTCGACTGCATAATAACAGATCCTCCCTATGGAA
TAAGAGAGGCCACGGAAAAGGTGGAGAAAAAGGCTAGCGTAAAGGCCAAC
ACTAGAAGTGACAGCATGGTGCATTACCCATCAACGTCGCACTATTCCTT
GCAGAGTCTCTATGGGGATCTTCTCGAGTTCTCTGCGAGGCACCTAAAAC
TGGGAGGACGTCTTGTCTGCTGGATACCCTTTCACAGCGAGGACTACGAC
CCGAAGATGCTGCCACAGCATCAGCATCTGAGCCTGATAGCTAACTCTGA
GCAGCAATTGACTGGGAATACAGCTAGGCGGCTACTCACCTATGAAAAGT
GTTTCGAGTATAGTCCAACAGAACCCTTATTGTGCAGCATAAAACAGGTG
CCAACGCCCTCGCAGGACTTCAGGGATCGGTACTTTAATAATGCTCTGGA
GTCACGCAAAGAGCGTCGAATGCGGAAGGCAGAGCTGCGGGAACAGGCTC
GTGTGGAGATGAATGCACGGGGAAAGATTCCTACGGATGGGCGCTCCAAA
AAGTGTGACCTGAATAAAGCACGATTTATGTGAAAGCTTTCTAGACCAT
BS09229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1074-RA | 1467 | CG1074-PA | 1..1467 | 17..1483 | 7320 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1074-RA | 1687 | CG1074-RA | 96..1563 | 16..1483 | 7325 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4434654..4435450 | 142..938 | 3985 | 100 | Plus |
| 3R | 32079331 | 3R | 4435507..4436051 | 939..1483 | 2710 | 99.8 | Plus |
| 3R | 32079331 | 3R | 4434060..4434186 | 16..142 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:49 has no hits.
BS09229.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:16 Download gff for
BS09229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-RA | 61..1538 | 7..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:29 Download gff for
BS09229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-RA | 97..1562 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:18 Download gff for
BS09229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-RA | 69..1534 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:07 Download gff for
BS09229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1074-RA | 97..1562 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:07 Download gff for
BS09229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4434061..4434186 | 17..142 | 100 | -> | Plus |
| 3R | 4434655..4435450 | 143..938 | 100 | -> | Plus |
| 3R | 4435507..4436050 | 939..1482 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:29 Download gff for
BS09229.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 259783..259908 | 17..142 | 100 | -> | Plus |
| arm_3R | 260377..261172 | 143..938 | 100 | -> | Plus |
| arm_3R | 261229..261772 | 939..1482 | 99 | | Plus |
BS09229.pep Sequence
Translation from 16 to 1482
> BS09229.pep
MVNWRKFILWFAQEHVDFRVQEFDSLVKMFGLQVRRLTEHTRKPFWLVEF
RDTDTALLYASRSVSLRAMFELYAHSNKLPEFHQRLRNHVTANWHSLAEY
FRVDASFKIVVETYNKHFSQREKVEKIESMDYLPIEGTVNLEKPVVEWWY
IEFWGLDPTAVPPEPEDILFGRLMAHGQRHLIKELSLKHRKFIGNTSMDA
QLSLLMANQAMVRNGDLVFDPFVGTGSLLVSAAKWGGYVLGADIDYMMVH
ARCRPSRITQKVREKDESIRANLKQYGCADRYMDVVVADFSNPVWHSRIS
FDCIITDPPYGIREATEKVEKKASVKANTRSDSMVHYPSTSHYSLQSLYG
DLLEFSARHLKLGGRLVCWIPFHSEDYDPKMLPQHQHLSLIANSEQQLTG
NTARRLLTYEKCFEYSPTEPLLCSIKQVPTPSQDFRDRYFNNALESRKER
RMRKAELREQARVEMNARGKIPTDGRSKKCDLNKARFM*
BS09229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1074-PA | 488 | CG1074-PA | 1..488 | 1..488 | 2588 | 100 | Plus |
