Clone Sequence Records
BS09236.3prime Sequence
896 bp (785 high quality bases) assembled on 2006-01-29
> BS09236.3prime
ATGGTCTAGAAAGCTTCTACTTTATGCCTGTCTTGTTGACCGGAAACACC
TGCGTGACAACTCCGATTCCTTTGCTGGTGCCCTCGCGGAACAGGATGCG
CATTCCAGGACGCACGTACTCCGGGTGGCCGACGAACTCGAACATCACCG
AAGCACAATCGTTTGTGCCCAGTCGCTCGCCGCCCATAATGCCCCGAATG
ACGGCCGTCTGGCGAATGCTGCCTATGTGGACTGTGGTTTGGAAGCCGAC
ATAGATGGCCGTGGCGTGGAACAGCACGGACACCTTGGCTTGGAAGAAGA
AGGTCCCGTAGGGCTCATCCAGACTATTTCCAATATCACCCAAAAGAACC
ATGCCACTTCGTAGCGTGGGCACATCCTGATCCATACTGAAAGACAGCGA
AGCGCTCTGACCAGCTCGGACAACTCGGCAAGGAGCCTTGTTTCGGTGGA
TAGTATTAACAGTAACGGGATGAAAGCTACCATCGGGAAGCGGACCAATC
TTCATTGCCATATTCTCGGTCAGCACGCCCTGGACAAGTAGACCGCCCAC
AACGGGTCCGACGTCAGAGACCCGGAAGATCTCGTCCACCTGGAACTCGC
AAGACTCCTGCTCGAGTCGATCCTTCTCGGCGTTGCTGATTCCGGGCGAA
AGGACGTACAGAAACTTTGTGACTAGGTTGAGTCCCGTGCCGGTCACATT
CGATACGCANAAGATGGGCACAATGTTCTCGGAGATCTGGTTTGACCCGG
CGGAGATGGCCTCATCCGTGTTGGTCACCACAAAGGGGACCTTCCGGCAC
CCAATGGTGGTGAGCAGGTTGCACAACTCCTGTACCGTCGCGTCCGGCGA
TGTGATATCTGTCTTCGTGACCAATACAAAGAGGGGCATGTCCAGT
BS09236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-PA | 1932 | CG2017-RA | 1053..1932 | 896..17 | 4331 | 99.6 | Minus |
| CG2017-PD | 1815 | CG2017-RD | 936..1815 | 896..17 | 4331 | 99.6 | Minus |
| CG2017-PC | 1815 | CG2017-RC | 936..1815 | 896..17 | 4331 | 99.6 | Minus |
| CG2017-PB | 1815 | CG2017-RB | 936..1815 | 896..17 | 4331 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:25:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RE | 2144 | CG2017-RE | 1036..1916 | 896..16 | 4364 | 99.7 | Minus |
| CG2017-RB | 2368 | CG2017-RB | 1260..2140 | 896..16 | 4364 | 99.7 | Minus |
| CG2017-RC | 2209 | CG2017-RC | 1101..1981 | 896..16 | 4364 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5858642..5859249 | 289..896 | 2999 | 99.5 | Plus |
| 3R | 32079331 | 3R | 5858311..5858584 | 16..289 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:25:50 has no hits.
BS09236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:21 Download gff for
BS09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-PA | 1053..1932 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:13 Download gff for
BS09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-PB | 936..1815 | 17..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:59 Download gff for
BS09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RC | 1101..1981 | 16..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:17 Download gff for
BS09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RC | 1101..1981 | 16..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:17 Download gff for
BS09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5858311..5858584 | 16..289 | 100 | <- | Plus |
| 3R | 5858643..5859249 | 290..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:59 Download gff for
BS09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1684033..1684306 | 16..289 | 100 | <- | Plus |
| arm_3R | 1684365..1684971 | 290..896 | 99 | | Plus |
BS09236.5prime Sequence
933 bp (794 high quality bases) assembled on 2006-01-28
> BS09236.5prime
GAAGTTATCAGTCGACTTGAGTGCAAAATTGCCATGGCAACGTGAATCGA
ACACGAACAGCAACACCCACACAGAGACCATTGAAGATCCGCGCATTGTG
GCGCAGTATTGCATCAGCAACTGCCAACACATTATGGAGTCCTTCCTGAG
TCTCTTTGATCCCAATCAGGACGACGGCTTCGAGGAAGAGCCCGAGCTCA
ATGGCAACAGCAGCGGCGGCGGAAGCAGCAGCAGCGACTATGAGACGGAC
GCCAATGCCAACGAGTGCAGCGTAGTGAGCGGGATGCCCACCGAGCGGGG
CAACCTGATCTTCGACTTCGAGCAGGGAATGCTGCCACCAGAGCCGCAGC
TCGGAAATGTGGAGTACAAGCTGAAGCTGGTCAACCCGTCGAAGCAGCGA
TTCGAGCACCTGGTGACCCAGATGAAGTGGCGTCTGCGCGAGGGAAACGG
CGAGGCCATCTACGAGATTGGAGTATCCGACGCCGGCTATCTGCAGGGAC
TCAGCGACAAGGACATGAATGCCTCGCTCACCACGCTCAAGCAGATGGCC
CACAGCCTAGGAGCCAGTACCTCAGTGCTGCGGCGAAAGACCATCGCCGC
CCGACGCGCCGTCGCCGAGGTACTGGTCCGTAAGATCCCCGACGACCAGC
ACAACATCGAGGTTCGGGTGGCGGTGCTCGGCGGAGCTGATGCAGGCAAA
TCCACTTTGCTGGGCGTGCTTACACAGGACGAGCTGGATAACGGACACGG
CCGGGCGCGGCTCAATATGTTTAGGCACATGCACGAGATTCAGTCTGGCC
GCACCTCCTGCATCTCCCACGAGACGCTTGGCTTCGATGCACTGGGTAAT
GTGGTCAACTACNAGTACAATGAGATGATGACGGCAGAGGGAGATTAGCG
ACAGGTCCAGCAAGCTGGTTACCCTCCTGGATC
BS09236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-PA | 1932 | CG2017-RA | 2..874 | 18..890 | 4346 | 99.8 | Plus |
| CG2017-PD | 1815 | CG2017-RD | 1..757 | 134..890 | 3766 | 99.8 | Plus |
| CG2017-PC | 1815 | CG2017-RC | 1..757 | 134..890 | 3766 | 99.8 | Plus |
| CG2017-PB | 1815 | CG2017-RB | 1..757 | 134..890 | 3766 | 99.8 | Plus |
| CG2017-PA | 1932 | CG2017-RA | 873..906 | 890..923 | 170 | 100 | Plus |
| CG2017-PD | 1815 | CG2017-RD | 756..789 | 890..923 | 170 | 100 | Plus |
| CG2017-PC | 1815 | CG2017-RC | 756..789 | 890..923 | 170 | 100 | Plus |
| CG2017-PB | 1815 | CG2017-RB | 756..789 | 890..923 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RA | 2289 | CG2017-RA | 130..1044 | 18..933 | 4514 | 99.6 | Plus |
| CG2017-RE | 2144 | CG2017-RE | 92..899 | 125..933 | 3979 | 99.5 | Plus |
| CG2017-RB | 2368 | CG2017-RB | 316..1123 | 125..933 | 3979 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5859731..5860404 | 798..125 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 5859386..5859521 | 933..797 | 594 | 97.1 | Minus |
| 3R | 32079331 | 3R | 5862170..5862276 | 124..18 | 535 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1106..1161 | 199..254 | 109 | 66.1 | Plus |
BS09236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:22 Download gff for
BS09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-PA | 2..916 | 18..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:15 Download gff for
BS09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-PA | 2..916 | 18..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:21:45 Download gff for
BS09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 127..1044 | 15..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:24 Download gff for
BS09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 127..1044 | 15..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:24 Download gff for
BS09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5859386..5859520 | 798..933 | 97 | <- | Minus |
| 3R | 5859732..5860404 | 125..797 | 100 | <- | Minus |
| 3R | 5862170..5862279 | 15..124 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:21:45 Download gff for
BS09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1685108..1685242 | 798..933 | 97 | <- | Minus |
| arm_3R | 1685454..1686126 | 125..797 | 100 | <- | Minus |
| arm_3R | 1687892..1688001 | 15..124 | 99 | | Minus |
BS09236.complete Sequence
1964 bp assembled on 2009-08-24
GenBank Submission: KX801197
> BS09236.complete
GAAGTTATCAGTCGACATGAGTGCAAAATTGCCATGGCAACGTGAATCGA
ACACGAACAGCAACACCCACACAGAGACCATTGAAGATCCGCGCATTGTG
GCGCAGTATTGCATCAGCAACTGCCAACACATTATGGAGTCCTTCCTGAG
TCTCTTTGATCCCAATCAGGACGACGGCTTCGAGGAAGAGCCCGAGCTCA
ATGGCAACAGCAGCGGCGGCGGAAGCAGCAGCAGCGACTATGAGACGGAC
GCCAATGCCAACGAGTGCAGCGTAGTGAGCGGGATGCCCACCGAGCGGGG
CAACCTGATCTTCGACTTCGAGCAGGGAATGCTGCCACCAGAGCCGCAGC
TCGGAAATGTGGAGTACAAGCTGAAGCTGGTCAACCCGTCGAAGCAGCGA
TTCGAGCACCTGGTGACCCAGATGAAGTGGCGTCTGCGCGAGGGAAACGG
CGAGGCCATCTACGAGATTGGAGTATCCGACGCCGGCTATCTGCAGGGAC
TCAGCGACAAGGACATGAATGCCTCGCTCACCACGCTCAAGCAGATGGCC
CACAGCCTAGGAGCCAGTACCTCAGTGCTGCGGCGAAAGACCATCGCCGC
CCGACGCGCCGTCGCCGAGGTACTGGTCCGTAAGATCCCCGACGACCAGC
ACAACATCGAGGTTCGGGTGGCGGTGCTCGGCGGAGCTGATGCAGGCAAA
TCCACTTTGCTGGGCGTGCTTACACAGGACGAGCTGGATAACGGACACGG
CCGGGCGCGGCTCAATATGTTTAGGCACATGCACGAGATTCAGTCTGGCC
GCACCTCCTGCATCTCCCACGAGACGCTTGGCTTCGATGCACTGGGTAAT
GTGGTCAACTACAAGTACAATGAGATGATGACGGCAGAGGAGATTAGCGA
CAGGTCCAGCAAGCTGGTTACCTTCATGGATCTAGCCGGACACCGACGCT
ACATGCGCACCACCGTGCAGGCACTGAGTGGATACTCACCCCACTACGCC
ATGCTGGTGGTATCGGCGGGCAGCGGTTGCAACGACACCACCGAGGAGCA
CTTGGCTATCGTGCGGGCACTGGACATGCCCTTCTTTGTATTGGTCACGA
AGACAGATATCACATCGCCGGACGCGACGGTACAGGAGTTGTGCAACCTG
CTCACCACCATTGGGTGCCGGAAGGTTCCCTTTGTGGTGACCAACACGGA
TGAGGCCATCTCCGCCGGGTCAAACCAGATCTCCGAGAACATTGTGCCCA
TCTTTTGCGTATCGAATGTGACCGGCACGGGACTCAACCTAGTCACAAAG
TTTCTGTACGTCCTTTCGCCCGGAATCAGCAACGCCGAGAAGGATCGACT
CGAGCAGGAGTCTTGCGAGTTCCAGGTGGACGAGATCTTCCGGGTCTCTG
ACGTCGGACCCGTTGTGGGCGGTCTACTTGTCCAGGGCGTGCTGACCGAG
AATATGGCAATGAAGATTGGTCCGCTTCCCGATGGTAGCTTTCATCCCGT
TACTGTTAATACTATCCACCGAAACAAGGCTCCTTGCCGAGTTGTCCGAG
CTGGTCAGAGCGCTTCGCTGTCTTTCAGTATGGATCAGGATGTGCCCACG
CTACGAAGTGGCATGGTTCTTTTGGGTGATATTGGAAATAGTCTGGATGA
GCCCTACGGGACCTTCTTCTTCCAAGCCAAGGTGTCCGTGCTGTTCCACG
CCACGGCCATCTATGTCGGCTTCCAAACCACAGTCCACATAGGCAGCATT
CGCCAGACGGCCGTCATTCGGGGCATTATGGGCGGCGAGCGACTGGGCAC
AAACGATTGTGCTTCGGTGATGTTCGAGTTCGTCGGCCACCCGGAGTACG
TGCGTCCTGGAATGCGCATCCTGTTCCGCGAGGGCACCAGCAAAGGAATC
GGAGTTGTCACGCAGGTGTTTCCGGTCAACAAGACAGGCATAAAGTAGAA
GCTTTCTAGACCAT
BS09236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RA | 1932 | CG2017-PA | 1..1932 | 17..1948 | 9660 | 100 | Plus |
| CG2017-RE | 1815 | CG2017-PE | 1..1815 | 134..1948 | 9075 | 100 | Plus |
| CG2017-RB | 1815 | CG2017-PB | 1..1815 | 134..1948 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-RA | 2289 | CG2017-RA | 127..2061 | 15..1949 | 9675 | 100 | Plus |
| CG2017-RE | 2144 | CG2017-RE | 92..1916 | 125..1949 | 9125 | 100 | Plus |
| CG2017-RB | 2368 | CG2017-RB | 316..2140 | 125..1949 | 9125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5858642..5859521 | 1676..797 | 4400 | 100 | Minus |
| 3R | 32079331 | 3R | 5859731..5860404 | 798..125 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 5858311..5858584 | 1949..1676 | 1370 | 100 | Minus |
| 3R | 32079331 | 3R | 5862170..5862279 | 124..15 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:30:09 has no hits.
BS09236.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:12 Download gff for
BS09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 135..2066 | 17..1948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:49:28 Download gff for
BS09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 129..2060 | 17..1948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:06 Download gff for
BS09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2017-RA | 129..2060 | 17..1948 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:06 Download gff for
BS09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5858312..5858584 | 1676..1948 | 100 | <- | Minus |
| 3R | 5858643..5859520 | 798..1675 | 100 | <- | Minus |
| 3R | 5859732..5860404 | 125..797 | 100 | <- | Minus |
| 3R | 5862170..5862277 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:49:28 Download gff for
BS09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1684034..1684306 | 1676..1948 | 100 | <- | Minus |
| arm_3R | 1684365..1685242 | 798..1675 | 100 | <- | Minus |
| arm_3R | 1685454..1686126 | 125..797 | 100 | <- | Minus |
| arm_3R | 1687892..1687999 | 17..124 | 100 | | Minus |
BS09236.pep Sequence
Translation from 16 to 1947
> BS09236.pep
MSAKLPWQRESNTNSNTHTETIEDPRIVAQYCISNCQHIMESFLSLFDPN
QDDGFEEEPELNGNSSGGGSSSSDYETDANANECSVVSGMPTERGNLIFD
FEQGMLPPEPQLGNVEYKLKLVNPSKQRFEHLVTQMKWRLREGNGEAIYE
IGVSDAGYLQGLSDKDMNASLTTLKQMAHSLGASTSVLRRKTIAARRAVA
EVLVRKIPDDQHNIEVRVAVLGGADAGKSTLLGVLTQDELDNGHGRARLN
MFRHMHEIQSGRTSCISHETLGFDALGNVVNYKYNEMMTAEEISDRSSKL
VTFMDLAGHRRYMRTTVQALSGYSPHYAMLVVSAGSGCNDTTEEHLAIVR
ALDMPFFVLVTKTDITSPDATVQELCNLLTTIGCRKVPFVVTNTDEAISA
GSNQISENIVPIFCVSNVTGTGLNLVTKFLYVLSPGISNAEKDRLEQESC
EFQVDEIFRVSDVGPVVGGLLVQGVLTENMAMKIGPLPDGSFHPVTVNTI
HRNKAPCRVVRAGQSASLSFSMDQDVPTLRSGMVLLGDIGNSLDEPYGTF
FFQAKVSVLFHATAIYVGFQTTVHIGSIRQTAVIRGIMGGERLGTNDCAS
VMFEFVGHPEYVRPGMRILFREGTSKGIGVVTQVFPVNKTGIK*
BS09236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2017-PA | 643 | CG2017-PA | 1..643 | 1..643 | 3317 | 100 | Plus |
| CG2017-PE | 604 | CG2017-PE | 1..604 | 40..643 | 3103 | 100 | Plus |
| CG2017-PB | 604 | CG2017-PB | 1..604 | 40..643 | 3103 | 100 | Plus |
| CG2017-PC | 604 | CG2017-PC | 1..604 | 40..643 | 3103 | 100 | Plus |
| CG2017-PD | 604 | CG2017-PD | 1..604 | 40..643 | 3103 | 100 | Plus |
