Clone BS09248 Report

Search the DGRC for BS09248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:48
Vector:pDNR-Dual
Associated Gene/Transcript128up-RA
Protein status:BS09248.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09248.3prime Sequence

904 bp (810 high quality bases) assembled on 2006-01-29

> BS09248.3prime
ATGGTCTAGAAAGCTTCTAAACCTTCTTCACAATCTGGACCACATCCTCG
TCGTTGAGAACGTGTTCGATGCCCACCTTCTGTGGCTGATGCTTCACAGA
TGAGCCCCAAACCAGCGCATATTTAAATTCCTTGGCAATGGAGCGATGCA
GCTTGTTGCAGAAATCCTCAATGCTGGTGCGCTCGTTGTGGAGTACCACG
GGCGAGTTGTAATCGGGCAGCTGGCCCTTGGGCTTGGTGTAGATGCGCTG
CAGTCGCAGGTATTCCCACATCAGCTCCAGCAGATCGTCAAAGTTCCAGT
GGTGATGGGCCGAGATGGGCACGCAATGCGGGATCTTGTAGATGACGTCC
AGCTCCTCGATGGAGATCTGATCGATCTTGTTCAGCAGATATATGCAGGG
TATGTAGATGCGGTTGCCCTCGATAACGTCAATGAGGTCGTCACTAGTGG
CGTCGTATCTCAGGGTGATGTCCGCATTGTGGATCTTGTACTCGGATAGA
ATGGTCTTCACCAGATCCGTGTCCAACTCGGACTGCGGAACCATGCTGTT
CAGATTGATGCCACCCTTGTCCTTCCGCTTGTAGTAGATATTTGGTGGTT
TCTTGTTAAGCCGGATGCCGAAGCCCTCCAATTCATGCTCGAGGAGTTTC
TTGTGGCCAAGCGGTTTCAGGCAATCCAGCACCATGAAAATGAGGTTACA
GGTGCGAGCGACAGCAATCACCTGACGACCTCGACCCTTGCCATCCTTAG
CGCCCTCAATGATACCGGGCAAGTCCAGCAGCTGGATCTTAGCGCCCTTG
TACTTAATGCATCCCGGCACAGTGGTCAACGTTGTGAATTCGTATGCCGC
CACCTCGGAGTAAACGCCAGCCAAGTTGGGAGAGCAGTGTGGATTTACCC
ACAG

BS09248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8340-PA 1107 128up-RA 245..1107 879..17 4315 100 Minus
CG6195-PA 1092 CG6195-RA 733..768 382..347 155 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
128up-RA 1304 CG8340-RA 346..1233 904..16 4420 99.9 Minus
CG6195-RA 1250 CG6195-RA 424..532 809..701 215 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12037828..12038611 904..120 3875 99.9 Minus
2R 25286936 2R 12038677..12038780 119..16 520 100 Minus
3R 32079331 3R 19647729..19647837 701..809 215 79.8 Plus
Blast to na_te.dros performed 2015-02-12 18:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 3268..3358 305..394 128 61.5 Plus

BS09248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:44 Download gff for BS09248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8340-PA 221..1107 17..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:41 Download gff for BS09248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8340-PA 221..1107 17..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:29 Download gff for BS09248.3prime
Subject Subject Range Query Range Percent Splice Strand
128up-RA 346..1235 12..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:57 Download gff for BS09248.3prime
Subject Subject Range Query Range Percent Splice Strand
128up-RA 346..1235 12..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:57 Download gff for BS09248.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12037828..12038611 120..904 99 -> Minus
2R 12038677..12038782 12..119 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:29 Download gff for BS09248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7925333..7926116 120..904 99 -> Minus
arm_2R 7926182..7926287 12..119 98   Minus

BS09248.5prime Sequence

914 bp (819 high quality bases) assembled on 2006-01-29

> BS09248.5prime
GAAGTTATCAGTCGACATGAGCACAATATTGGAGAAAATCTCGGCCATCG
AGTCGGAGATGGCCCGAACCCAAAAGAACAAGGCCACCTCGGCCCATTTG
GGTCTACTGAAGGCGAAGCTGGCTAAGCTGCGACGCGAACTGATTTCCCC
CAAAGGAGGCGGCGGCGGAACCGGCGAAGCTGGCTTCGAGGTGGCCAAGA
CTGGAGATGCCCGGGTGGGATTCGTAGGGTTTCCTTCTGTGGGTAAATCC
ACACTGCTCTCCAACTTGGCTGGCGTTTACTCCGAGGTGGCGGCATACGA
ATTCACAACGTTGACCACTGTGCCGGGATGCATTAAGTACAAGGGCGCTA
AGATCCAGCTGCTGGACTTGCCCGGTATCATTGAGGGCGCTAAGGATGGC
AAGGGTCGAGGTCGTCAGGTGATTGCTGTCGCTCGCACCTGTAACCTCAT
TTTCATGGTGCTGGATTGCCTGAAACCGCTTGGCCACAAGAAACTCCTCG
AGCATGAATTGGAGGGCTTCGGCATCCGGCTTAACAAGAAACCACCAAAT
ATCTACTACAAGCGGAAGGACAAGGGTGGCATCAATCTGAACAGCATGGT
TCCGCAGTCCGAGTTGGACACGGATCTGGTGAAGACCATTCTATCCGAGT
ACAAGATCCACAATGCGGACATCACCCTGAGATACGACGCCACTAGTGAC
GACCTCATTGACGTTATCGAGGGCAACCGCATCTACATACCCTGCATATA
TCTGCTGAACAAGATCGATCAGATCTCCATCGAGGAGCTGGACGTCATCT
ACAAGATCCCGCATTGCGTGCCCATCTCGGCCCATCACCACTGGAACTTT
GACGATCTGCTGGAGCTGATGTGGGGATACCTGCGACTGCAGCGCATCTA
CACCAAGCCCAAGG

BS09248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8340-PA 1107 128up-RA 1..898 17..914 4465 99.8 Plus
CG6195-PA 1092 CG6195-RA 733..768 758..793 155 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
128up-RA 1304 CG8340-RA 125..1023 16..914 4480 99.9 Plus
CG6195-RA 1250 CG6195-RA 424..532 331..439 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12037769..12038505 178..914 3670 99.9 Plus
2R 25286936 2R 12037595..12037717 57..179 615 100 Plus
2R 25286936 2R 12037422..12037464 16..58 215 100 Plus
3R 32079331 3R 19647729..19647837 439..331 215 79.8 Minus
Blast to na_te.dros performed 2015-02-13 02:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 3268..3358 835..746 128 61.5 Minus

BS09248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:45 Download gff for BS09248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8340-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:42 Download gff for BS09248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8340-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:59 Download gff for BS09248.5prime
Subject Subject Range Query Range Percent Splice Strand
128up-RA 116..1023 8..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:33:42 Download gff for BS09248.5prime
Subject Subject Range Query Range Percent Splice Strand
128up-RA 116..1023 8..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:33:42 Download gff for BS09248.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12037413..12037464 8..58 94 -> Plus
2R 12037597..12037717 59..179 100 -> Plus
2R 12037771..12038505 180..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:59 Download gff for BS09248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7924918..7924969 8..58 94 -> Plus
arm_2R 7925102..7925222 59..179 100 -> Plus
arm_2R 7925276..7926010 180..914 99   Plus

BS09248.complete Sequence

1139 bp (1139 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ638822

> BS09248.complete
GAAGTTATCAGTCGACATGAGCACAATATTGGAGAAAATCTCGGCCATCG
AGTCGGAGATGGCCCGAACCCAAAAGAACAAGGCCACCTCGGCCCATTTG
GGTCTACTGAAGGCGAAGCTGGCTAAGCTGCGACGCGAACTGATTTCCCC
CAAAGGAGGCGGCGGCGGAACCGGCGAAGCTGGCTTCGAGGTGGCCAAGA
CTGGAGATGCCCGGGTGGGATTCGTAGGGTTTCCTTCTGTGGGTAAATCC
ACACTGCTCTCCAACTTGGCTGGCGTTTACTCCGAGGTGGCGGCATACGA
ATTCACAACGTTGACCACTGTGCCGGGATGCATTAAGTACAAGGGCGCTA
AGATCCAGCTGCTGGACTTGCCCGGTATCATTGAGGGCGCTAAGGATGGC
AAGGGTCGAGGTCGTCAGGTGATTGCTGTCGCTCGCACCTGTAACCTCAT
TTTCATGGTGCTGGATTGCCTGAAACCGCTTGGCCACAAGAAACTCCTCG
AGCATGAATTGGAGGGCTTCGGCATCCGGCTTAACAAGAAACCACCAAAT
ATCTACTACAAGCGGAAGGACAAGGGTGGCATCAATCTGAACAGCATGGT
TCCGCAGTCCGAGTTGGACACGGATCTGGTGAAGACCATTCTATCCGAGT
ACAAGATCCACAATGCGGACATCACCCTGAGATACGACGCCACTAGTGAC
GACCTCATTGACGTTATCGAGGGCAACCGCATCTACATACCCTGCATATA
TCTGCTGAACAAGATCGATCAGATCTCCATCGAGGAGCTGGACGTCATCT
ACAAGATCCCGCATTGCGTGCCCATCTCGGCCCATCACCACTGGAACTTT
GACGATCTGCTGGAGCTGATGTGGGAATACCTGCGACTGCAGCGCATCTA
CACCAAGCCCAAGGGCCAGCTGCCCGATTACAACTCGCCCGTGGTACTCC
ACAACGAGCGCACCAGCATTGAGGATTTCTGCAACAAGCTGCATCGCTCC
ATTGCCAAGGAATTTAAATATGCGCTGGTTTGGGGCTCATCTGTGAAGCA
TCAGCCACAGAAGGTGGGCATCGAACACGTTCTCAACGACGAGGATGTGG
TCCAGATTGTGAAGAAGGTTTAGAAGCTTTCTAGACCAT

BS09248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
128up-RA 1107 CG8340-PA 1..1107 17..1123 5535 100 Plus
CG6195-RA 1092 CG6195-PA 306..414 331..439 215 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
128up-RA 1304 CG8340-RA 125..1233 16..1124 5545 100 Plus
CG6195-RA 1250 CG6195-RA 424..532 331..439 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12037769..12038611 178..1020 4215 100 Plus
2R 25286936 2R 12037595..12037717 57..179 615 100 Plus
2R 25286936 2R 12038677..12038780 1021..1124 520 100 Plus
2R 25286936 2R 12037422..12037464 16..58 215 100 Plus
3R 32079331 3R 19647729..19647837 439..331 215 79.8 Minus
Blast to na_te.dros performed 2014-11-27 13:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
gtwin 7411 gtwin GTWIN 7411bp 3268..3358 835..746 128 61.5 Minus

BS09248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:41 Download gff for BS09248.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 1..1107 17..1123 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:11 Download gff for BS09248.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 108..1227 8..1128 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:41 Download gff for BS09248.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 126..1232 17..1123 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:41 Download gff for BS09248.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 108..1227 8..1128 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:21 Download gff for BS09248.complete
Subject Subject Range Query Range Percent Splice Strand
128up-RA 126..1232 17..1123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:21 Download gff for BS09248.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12037423..12037464 17..58 100 -> Plus
2R 12037597..12037717 59..179 100 -> Plus
2R 12037771..12038611 180..1020 100 -> Plus
2R 12038677..12038779 1021..1123 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:41 Download gff for BS09248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7924928..7924969 17..58 100 -> Plus
arm_2R 7925102..7925222 59..179 100 -> Plus
arm_2R 7925276..7926116 180..1020 100 -> Plus
arm_2R 7926182..7926284 1021..1123 100   Plus

BS09248.pep Sequence

Translation from 16 to 1122

> BS09248.pep
MSTILEKISAIESEMARTQKNKATSAHLGLLKAKLAKLRRELISPKGGGG
GTGEAGFEVAKTGDARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLT
TVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCNLIFMVLD
CLKPLGHKKLLEHELEGFGIRLNKKPPNIYYKRKDKGGINLNSMVPQSEL
DTDLVKTILSEYKIHNADITLRYDATSDDLIDVIEGNRIYIPCIYLLNKI
DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKG
QLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKV
GIEHVLNDEDVVQIVKKV*

BS09248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
128up-PA 368 CG8340-PA 1..368 1..368 1910 100 Plus
CG6195-PA 363 CG6195-PA 3..363 4..367 1056 56.3 Plus
CG13390-PA 381 CG13390-PA 148..329 29..185 202 31.3 Plus
CG10628-PA 383 CG10628-PA 130..293 47..188 179 34.5 Plus