Clone Sequence Records
BS09248.3prime Sequence
904 bp (810 high quality bases) assembled on 2006-01-29
> BS09248.3prime
ATGGTCTAGAAAGCTTCTAAACCTTCTTCACAATCTGGACCACATCCTCG
TCGTTGAGAACGTGTTCGATGCCCACCTTCTGTGGCTGATGCTTCACAGA
TGAGCCCCAAACCAGCGCATATTTAAATTCCTTGGCAATGGAGCGATGCA
GCTTGTTGCAGAAATCCTCAATGCTGGTGCGCTCGTTGTGGAGTACCACG
GGCGAGTTGTAATCGGGCAGCTGGCCCTTGGGCTTGGTGTAGATGCGCTG
CAGTCGCAGGTATTCCCACATCAGCTCCAGCAGATCGTCAAAGTTCCAGT
GGTGATGGGCCGAGATGGGCACGCAATGCGGGATCTTGTAGATGACGTCC
AGCTCCTCGATGGAGATCTGATCGATCTTGTTCAGCAGATATATGCAGGG
TATGTAGATGCGGTTGCCCTCGATAACGTCAATGAGGTCGTCACTAGTGG
CGTCGTATCTCAGGGTGATGTCCGCATTGTGGATCTTGTACTCGGATAGA
ATGGTCTTCACCAGATCCGTGTCCAACTCGGACTGCGGAACCATGCTGTT
CAGATTGATGCCACCCTTGTCCTTCCGCTTGTAGTAGATATTTGGTGGTT
TCTTGTTAAGCCGGATGCCGAAGCCCTCCAATTCATGCTCGAGGAGTTTC
TTGTGGCCAAGCGGTTTCAGGCAATCCAGCACCATGAAAATGAGGTTACA
GGTGCGAGCGACAGCAATCACCTGACGACCTCGACCCTTGCCATCCTTAG
CGCCCTCAATGATACCGGGCAAGTCCAGCAGCTGGATCTTAGCGCCCTTG
TACTTAATGCATCCCGGCACAGTGGTCAACGTTGTGAATTCGTATGCCGC
CACCTCGGAGTAAACGCCAGCCAAGTTGGGAGAGCAGTGTGGATTTACCC
ACAG
BS09248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8340-PA | 1107 | 128up-RA | 245..1107 | 879..17 | 4315 | 100 | Minus |
CG6195-PA | 1092 | CG6195-RA | 733..768 | 382..347 | 155 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-RA | 1304 | CG8340-RA | 346..1233 | 904..16 | 4420 | 99.9 | Minus |
CG6195-RA | 1250 | CG6195-RA | 424..532 | 809..701 | 215 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12037828..12038611 | 904..120 | 3875 | 99.9 | Minus |
2R | 25286936 | 2R | 12038677..12038780 | 119..16 | 520 | 100 | Minus |
3R | 32079331 | 3R | 19647729..19647837 | 701..809 | 215 | 79.8 | Plus |
Blast to na_te.dros performed 2015-02-12 18:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 3268..3358 | 305..394 | 128 | 61.5 | Plus |
BS09248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:44 Download gff for
BS09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8340-PA | 221..1107 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:41 Download gff for
BS09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8340-PA | 221..1107 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:29 Download gff for
BS09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 346..1235 | 12..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:13:57 Download gff for
BS09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 346..1235 | 12..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:13:57 Download gff for
BS09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12037828..12038611 | 120..904 | 99 | -> | Minus |
2R | 12038677..12038782 | 12..119 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:29 Download gff for
BS09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7925333..7926116 | 120..904 | 99 | -> | Minus |
arm_2R | 7926182..7926287 | 12..119 | 98 | | Minus |
BS09248.5prime Sequence
914 bp (819 high quality bases) assembled on 2006-01-29
> BS09248.5prime
GAAGTTATCAGTCGACATGAGCACAATATTGGAGAAAATCTCGGCCATCG
AGTCGGAGATGGCCCGAACCCAAAAGAACAAGGCCACCTCGGCCCATTTG
GGTCTACTGAAGGCGAAGCTGGCTAAGCTGCGACGCGAACTGATTTCCCC
CAAAGGAGGCGGCGGCGGAACCGGCGAAGCTGGCTTCGAGGTGGCCAAGA
CTGGAGATGCCCGGGTGGGATTCGTAGGGTTTCCTTCTGTGGGTAAATCC
ACACTGCTCTCCAACTTGGCTGGCGTTTACTCCGAGGTGGCGGCATACGA
ATTCACAACGTTGACCACTGTGCCGGGATGCATTAAGTACAAGGGCGCTA
AGATCCAGCTGCTGGACTTGCCCGGTATCATTGAGGGCGCTAAGGATGGC
AAGGGTCGAGGTCGTCAGGTGATTGCTGTCGCTCGCACCTGTAACCTCAT
TTTCATGGTGCTGGATTGCCTGAAACCGCTTGGCCACAAGAAACTCCTCG
AGCATGAATTGGAGGGCTTCGGCATCCGGCTTAACAAGAAACCACCAAAT
ATCTACTACAAGCGGAAGGACAAGGGTGGCATCAATCTGAACAGCATGGT
TCCGCAGTCCGAGTTGGACACGGATCTGGTGAAGACCATTCTATCCGAGT
ACAAGATCCACAATGCGGACATCACCCTGAGATACGACGCCACTAGTGAC
GACCTCATTGACGTTATCGAGGGCAACCGCATCTACATACCCTGCATATA
TCTGCTGAACAAGATCGATCAGATCTCCATCGAGGAGCTGGACGTCATCT
ACAAGATCCCGCATTGCGTGCCCATCTCGGCCCATCACCACTGGAACTTT
GACGATCTGCTGGAGCTGATGTGGGGATACCTGCGACTGCAGCGCATCTA
CACCAAGCCCAAGG
BS09248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8340-PA | 1107 | 128up-RA | 1..898 | 17..914 | 4465 | 99.8 | Plus |
CG6195-PA | 1092 | CG6195-RA | 733..768 | 758..793 | 155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-RA | 1304 | CG8340-RA | 125..1023 | 16..914 | 4480 | 99.9 | Plus |
CG6195-RA | 1250 | CG6195-RA | 424..532 | 331..439 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12037769..12038505 | 178..914 | 3670 | 99.9 | Plus |
2R | 25286936 | 2R | 12037595..12037717 | 57..179 | 615 | 100 | Plus |
2R | 25286936 | 2R | 12037422..12037464 | 16..58 | 215 | 100 | Plus |
3R | 32079331 | 3R | 19647729..19647837 | 439..331 | 215 | 79.8 | Minus |
Blast to na_te.dros performed 2015-02-13 02:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 3268..3358 | 835..746 | 128 | 61.5 | Minus |
BS09248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:45 Download gff for
BS09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8340-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:42 Download gff for
BS09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8340-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:59 Download gff for
BS09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 116..1023 | 8..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:33:42 Download gff for
BS09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 116..1023 | 8..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:33:42 Download gff for
BS09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12037413..12037464 | 8..58 | 94 | -> | Plus |
2R | 12037597..12037717 | 59..179 | 100 | -> | Plus |
2R | 12037771..12038505 | 180..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:59 Download gff for
BS09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7924918..7924969 | 8..58 | 94 | -> | Plus |
arm_2R | 7925102..7925222 | 59..179 | 100 | -> | Plus |
arm_2R | 7925276..7926010 | 180..914 | 99 | | Plus |
BS09248.complete Sequence
1139 bp (1139 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ638822
> BS09248.complete
GAAGTTATCAGTCGACATGAGCACAATATTGGAGAAAATCTCGGCCATCG
AGTCGGAGATGGCCCGAACCCAAAAGAACAAGGCCACCTCGGCCCATTTG
GGTCTACTGAAGGCGAAGCTGGCTAAGCTGCGACGCGAACTGATTTCCCC
CAAAGGAGGCGGCGGCGGAACCGGCGAAGCTGGCTTCGAGGTGGCCAAGA
CTGGAGATGCCCGGGTGGGATTCGTAGGGTTTCCTTCTGTGGGTAAATCC
ACACTGCTCTCCAACTTGGCTGGCGTTTACTCCGAGGTGGCGGCATACGA
ATTCACAACGTTGACCACTGTGCCGGGATGCATTAAGTACAAGGGCGCTA
AGATCCAGCTGCTGGACTTGCCCGGTATCATTGAGGGCGCTAAGGATGGC
AAGGGTCGAGGTCGTCAGGTGATTGCTGTCGCTCGCACCTGTAACCTCAT
TTTCATGGTGCTGGATTGCCTGAAACCGCTTGGCCACAAGAAACTCCTCG
AGCATGAATTGGAGGGCTTCGGCATCCGGCTTAACAAGAAACCACCAAAT
ATCTACTACAAGCGGAAGGACAAGGGTGGCATCAATCTGAACAGCATGGT
TCCGCAGTCCGAGTTGGACACGGATCTGGTGAAGACCATTCTATCCGAGT
ACAAGATCCACAATGCGGACATCACCCTGAGATACGACGCCACTAGTGAC
GACCTCATTGACGTTATCGAGGGCAACCGCATCTACATACCCTGCATATA
TCTGCTGAACAAGATCGATCAGATCTCCATCGAGGAGCTGGACGTCATCT
ACAAGATCCCGCATTGCGTGCCCATCTCGGCCCATCACCACTGGAACTTT
GACGATCTGCTGGAGCTGATGTGGGAATACCTGCGACTGCAGCGCATCTA
CACCAAGCCCAAGGGCCAGCTGCCCGATTACAACTCGCCCGTGGTACTCC
ACAACGAGCGCACCAGCATTGAGGATTTCTGCAACAAGCTGCATCGCTCC
ATTGCCAAGGAATTTAAATATGCGCTGGTTTGGGGCTCATCTGTGAAGCA
TCAGCCACAGAAGGTGGGCATCGAACACGTTCTCAACGACGAGGATGTGG
TCCAGATTGTGAAGAAGGTTTAGAAGCTTTCTAGACCAT
BS09248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-RA | 1107 | CG8340-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
CG6195-RA | 1092 | CG6195-PA | 306..414 | 331..439 | 215 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-RA | 1304 | CG8340-RA | 125..1233 | 16..1124 | 5545 | 100 | Plus |
CG6195-RA | 1250 | CG6195-RA | 424..532 | 331..439 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12037769..12038611 | 178..1020 | 4215 | 100 | Plus |
2R | 25286936 | 2R | 12037595..12037717 | 57..179 | 615 | 100 | Plus |
2R | 25286936 | 2R | 12038677..12038780 | 1021..1124 | 520 | 100 | Plus |
2R | 25286936 | 2R | 12037422..12037464 | 16..58 | 215 | 100 | Plus |
3R | 32079331 | 3R | 19647729..19647837 | 439..331 | 215 | 79.8 | Minus |
Blast to na_te.dros performed 2014-11-27 13:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 3268..3358 | 835..746 | 128 | 61.5 | Minus |
BS09248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:41 Download gff for
BS09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 1..1107 | 17..1123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:11 Download gff for
BS09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 108..1227 | 8..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:41 Download gff for
BS09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 126..1232 | 17..1123 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:41 Download gff for
BS09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 108..1227 | 8..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:21 Download gff for
BS09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
128up-RA | 126..1232 | 17..1123 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:21 Download gff for
BS09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12037423..12037464 | 17..58 | 100 | -> | Plus |
2R | 12037597..12037717 | 59..179 | 100 | -> | Plus |
2R | 12037771..12038611 | 180..1020 | 100 | -> | Plus |
2R | 12038677..12038779 | 1021..1123 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:41 Download gff for
BS09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7924928..7924969 | 17..58 | 100 | -> | Plus |
arm_2R | 7925102..7925222 | 59..179 | 100 | -> | Plus |
arm_2R | 7925276..7926116 | 180..1020 | 100 | -> | Plus |
arm_2R | 7926182..7926284 | 1021..1123 | 100 | | Plus |
BS09248.pep Sequence
Translation from 16 to 1122
> BS09248.pep
MSTILEKISAIESEMARTQKNKATSAHLGLLKAKLAKLRRELISPKGGGG
GTGEAGFEVAKTGDARVGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLT
TVPGCIKYKGAKIQLLDLPGIIEGAKDGKGRGRQVIAVARTCNLIFMVLD
CLKPLGHKKLLEHELEGFGIRLNKKPPNIYYKRKDKGGINLNSMVPQSEL
DTDLVKTILSEYKIHNADITLRYDATSDDLIDVIEGNRIYIPCIYLLNKI
DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKG
QLPDYNSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKV
GIEHVLNDEDVVQIVKKV*
BS09248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
128up-PA | 368 | CG8340-PA | 1..368 | 1..368 | 1910 | 100 | Plus |
CG6195-PA | 363 | CG6195-PA | 3..363 | 4..367 | 1056 | 56.3 | Plus |
CG13390-PA | 381 | CG13390-PA | 148..329 | 29..185 | 202 | 31.3 | Plus |
CG10628-PA | 383 | CG10628-PA | 130..293 | 47..188 | 179 | 34.5 | Plus |