Clone Sequence Records
BS09249.complete Sequence
1913 bp assembled on 2009-12-07
GenBank Submission: KX804883
> BS09249.complete
GAAGTTATCAGTCGACATGGGCTGGATTTTTGCTGTGCTCGTCGCACTGG
TGGCTCTGCTACTGACGAAACCCGGCTGGCGCTGGTTCTACATAGCGGGT
GCGACCGCTAGTCGCGATCTAACAGCTCTCTGGGCCTATATCAAGCTGCT
GAGGTACACGAAGCGCCATGAGCGGCTCAACTACACGGTGGCGGACGTCT
TCGAACGAAATGTTCAAGCCCATCCGGACAAGGTGGCTGTGGTCAGTGAG
ACGCAACGCTGGACCTTCCGTCAGGTGAACGAGCATGCGAACAAAGTGGC
CAATGTGCTGCAGGCTCAGGGCTACAAAAAGGGCGATGTGGTGGCCCTGT
TGCTGGAGAACCGCGCCGAGTACGTGGCCACCTGGCTGGGTCTCTCCAAG
ATCGGTGTGATCACACCGCTGATCAACACGAATCTGCGCGGTCCCTCCCT
GCTGCACAGCATCACGGTGGCCCATTGCTCGGCTCTCATTTACGGCGAGG
ACTTCCTGGAAGCTGTCACCGACGTGGCCAAGGATCTGCCAGCGAACCTC
ACACTCTTCCAGTTCAACAACGAGAACAACAACAGCGAGACGGAAAAGAA
CATACCGCAGGCCAAGAATCTGAACGCGCTGCTGACCACGGCCAGCTATG
AGAAGCCTAACAAGACGCAGGTTAACCACCACGACAAGCTGGTCTACATC
TACACCTCCGGCACCACAGGATTGCCAAAGGCTGCGGTTATCTCTCACTC
CCGTTATCTGTTTATCGCTGCTGGCATCCACTACACCATGGGTTTCCAGG
AGGAGGACATCTTCTACACACCCTTGCCTTTGTACCACACCGCTGGTGGC
ATTATGTGCATGGGTCAGTCGGTGCTTTTCGGCTCCACGGTCTCCATTCG
CAAGAAGTTCTCGGCATCCAACTATTTTGCCGACTGCGCCAAGTATAATG
CAACTATTGGTCAGTACATCGGTGAGATGGCTCGCTACATTCTAGCTACG
AAACCCTCGGAATACGACCAGAAACACCGAGTGCGTCTGGTCTTTGGAAA
CGGACTGCGACCGCAGATTTGGCCACAGTTTGTGCAGCGCTTCAACATTG
CCAAGGTTGGCGAGTTCTATGGCGCCACCGAGGGTAATGCGAACATCATG
AATCATGACAACACGGTGGGCGCCATCGGCTTTGTGTCGCGCATACTGCC
CAAGATCTATCCAATCTCGATCATTCGCGCCGATCCGGACACAGGAGAGC
CCATTAGGGATAGGAATGGCCTATGCCAGCTGTGCGCTCCCAACGAACCA
GGCGTATTCATCGGCAAGATCGTCAAGGGAAATCCTTCTCGCGAATTCCT
CGGCTACGTCGATGAAAAGGCCTCCGCGAAGAAGATTGTCAAGGATGTGT
TCAAGCATGGCGATATGGCTTTCATCTCCGGAGATCTGCTGGTTGCCGAC
GAGAAGGGTTATCTGTACTTCAAGGATCGCACCGGTGACACCTTCCGCTG
GAAGGGCGAGAATGTTTCCACCAGCGAGGTGGAGGCGCAGGTCAGCAATG
TGGCCGGTTACAAGGATACCGTCGTTTACGGCGTAACCATTCCGCACACC
GAGGGAAGGGCCGGCATGGCCGCCATCTATGATCCTGAGCGAGAATTGGA
CCTCGACGTCTTCGCCGCTAGCTTGGCCAAGGTGCTGCCCGCGTACGCTC
GTCCCCAGATCATTCGATTGCTCACCAAGGTGGACCTGACTGGAACCTTT
AAGCTGCGCAAGGTAGACCTGCAGAAGGAGGGCTACGATCCGAACGCGAT
CAAGGACGCGCTGTACTACCAGACTTCCAAGGGGCGGTACGAGCTGCTCA
CGCCCCAGGTTTACGACCAGGTGCAGCGCAACGAAATCCGCTTCTAAAAG
CATTCTAGACCAT
BS09249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fatp-RE | 1881 | CG7400-PE | 1..1881 | 17..1897 | 9105 | 98.9 | Plus |
| Fatp-RD | 2007 | CG7400-PD | 127..2007 | 17..1897 | 9105 | 98.9 | Plus |
| Fatp-RB | 1881 | CG7400-PB | 1..1881 | 17..1897 | 9105 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fatp-RE | 2374 | CG7400-RE | 80..1964 | 17..1901 | 9110 | 98.9 | Plus |
| Fatp-RD | 2744 | CG7400-RD | 450..2334 | 17..1901 | 9110 | 98.9 | Plus |
| Fatp-RB | 3401 | CG7400-RB | 526..2410 | 17..1901 | 9110 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10511663..10512608 | 1901..956 | 4505 | 98.4 | Minus |
| 2L | 23513712 | 2L | 10512935..10513564 | 753..124 | 3120 | 99.7 | Minus |
| 2R | 25286936 | 2R | 23060322..23060995 | 962..1635 | 1030 | 76.9 | Plus |
| 2L | 23513712 | 2L | 10512668..10512870 | 955..753 | 955 | 98 | Minus |
| 2R | 25286936 | 2R | 23059470..23059725 | 242..497 | 605 | 82.4 | Plus |
| 2L | 23513712 | 2L | 10516486..10516592 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:24:52 has no hits.
BS09249.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:43 Download gff for
BS09249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 524..2402 | 17..1895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:39 Download gff for
BS09249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 526..2404 | 17..1895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:26 Download gff for
BS09249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 524..2402 | 17..1895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:51 Download gff for
BS09249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 526..2404 | 17..1895 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:51 Download gff for
BS09249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10511669..10512608 | 956..1895 | 98 | <- | Minus |
| 2L | 10512668..10512869 | 754..955 | 98 | <- | Minus |
| 2L | 10512935..10513564 | 124..753 | 99 | <- | Minus |
| 2L | 10516486..10516592 | 17..123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:39 Download gff for
BS09249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10511669..10512608 | 956..1895 | 98 | <- | Minus |
| arm_2L | 10512668..10512869 | 754..955 | 98 | <- | Minus |
| arm_2L | 10512935..10513564 | 124..753 | 99 | <- | Minus |
| arm_2L | 10516486..10516592 | 17..123 | 100 | | Minus |
BS09249.3prime Sequence
914 bp (864 high quality bases) assembled on 2006-01-29
> BS09249.3prime
ATGGTCTAGAATGCTTTTAGAAGCGGATTTCGTTGCGCTGCACCTGGTCG
TAAACCTGGGGCGTGAGCAGCTCGTACCGCCCCTTGGAAGTCTGGTAGTA
CAGCGCGTCCTTGATCGCGTTCGGATCGTAGCCCTCCTTCTGCAGGTCTA
CCTTGCGCAGCTTAAAGGTTCCAGTCAGGTCCACCTTGGTGAGCAATCGA
ATGATCTGGGGACGAGCGTACGCGGGCAGCACCTTGGCCAAGCTAGCGGC
GAAGACGTCGAGGTCCAATTCTCGCTCAGGATCATAGATGGCGGCCATGC
CGGCCCTTCCCTCGGTGTGCGGAATGGTTACGCCGTAAACGACGGTATCC
TTGTAACCGGCCACATTGCTGACCTGCGCCTCCACCTCGCTGGTGGAAAC
ATTCTCGCCCTTCCAGCGGAAGGTGTCACCGGTGCGATCCTTGAAGTACA
GATAACCCTTCTCGTCGGCAACCAGCAGATCTCCGGAGATGAAAGCCATA
TCGCCATGCTTGAACACATCCTTGACAATCTTCTTCGCGGAGGCCTTTTC
ATCGACGTAGCCGAGGAATTCGCGAGAAGGATTTCCCTTGACGATCTTGC
CGATGAATACGCCTGGTTCGTTGGGAGCGCACAGCTGGCATAGGCCATTC
CTATCCCTAATGGGCTCTCCTGTGTCCGGATCGGCGCGAATGATCGAGAT
TGGATAGATCTTGGGCAGTATGCGCGACACAAAGCCGATGGCGCCCACCG
TGTTGTCATGATTCATGATGTTCGCATTACCCTCGGTGGCGCCATAGAAC
TCGCCAACCTTGGCAATGTTGAAGCGCTGCACAAACTGTGGCCAAATCTG
CGGTCGCAGTCCGTTTCAAAGACCAGACGCACTCGGTGTTTCTGGTCGTA
TTCCGAGGGTTTCG
BS09249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7400-PA | 1881 | Fatp-RA | 1031..1881 | 867..17 | 3930 | 98.4 | Minus |
| CG7400-PB | 1881 | Fatp-RB | 1031..1881 | 867..17 | 3930 | 98.4 | Minus |
| CG30194-PC | 2016 | CG30194-RC | 1528..1659 | 505..374 | 285 | 88.6 | Minus |
| CG30194-PB | 2112 | CG30194-RB | 1624..1755 | 505..374 | 285 | 88.6 | Minus |
| CG30194-PD | 2145 | CG30194-RD | 1657..1788 | 505..374 | 285 | 88.6 | Minus |
| CG7400-PA | 1881 | Fatp-RA | 983..1030 | 914..867 | 240 | 100 | Minus |
| CG7400-PB | 1881 | Fatp-RB | 983..1030 | 914..867 | 240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fatp-RE | 2374 | CG7400-RE | 1062..1964 | 914..13 | 4280 | 98.3 | Minus |
| Fatp-RD | 2744 | CG7400-RD | 1432..2334 | 914..13 | 4280 | 98.3 | Minus |
| Fatp-RB | 3401 | CG7400-RB | 1508..2410 | 914..13 | 4280 | 98.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10511663..10512565 | 13..914 | 4255 | 98.3 | Plus |
| 2R | 25286936 | 2R | 23060407..23060995 | 867..279 | 965 | 77.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:00:29 has no hits.
BS09249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:46 Download gff for
BS09249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-PA | 983..1881 | 17..914 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:44 Download gff for
BS09249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7400-PB | 983..1881 | 17..914 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:59:04 Download gff for
BS09249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 1508..2410 | 13..914 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:14 Download gff for
BS09249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 1508..2410 | 13..914 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:14 Download gff for
BS09249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10511663..10512565 | 13..914 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:59:04 Download gff for
BS09249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10511663..10512565 | 13..914 | 98 | | Plus |
BS09249.5prime Sequence
898 bp (787 high quality bases) assembled on 2006-01-28
> BS09249.5prime
GAAGTTATCAGTCGACATGGGCTGGATTTTTGCTGTGCTCGTCGCACTGG
TGGCTCTGCTACTGACGAAACCCGGCTGGCGCTGGTTCTACATAGCGGGT
GCGACCGCTAGTCGCGATCTAACAGCTCTCTGGGCCTATATCAAGCTGCT
GAGGTACACGAAGCGCCATGAGCGGCTCAACTACACGGTGGCGGACGTCT
TCGAACGAAATGTTCAAGCCCATCCGGACAAGGTGGCTGTGGTCAGTGAG
ACGCAACGCTGGACCTTCCGTCAGGTGAACGAGCATGCGAACAAAGTGGC
CAATGTGCTGCAGGCTCAGGGCTACAAAAAGGGCGATGTGGTGGCCCTGT
TGCTGGAGAACCGCGCCGAGTACGTGGCCACCTGGCTGGGTCTCTCCAAG
ATCGGTGTGATCACACCGCTGATCAACACGAATCTGCGCGGTCCCTCCCT
GCTGCACAGCATCACGGTGGCCCATTGCTCGGCTCTCATTTACGGCGAGG
ACTTCCTGGAAGCTGTCACCGACGTGGCCAAGGATCTGCCAGCGAACCTC
ACACTCTTCCAGTTCAACAACGAGAACAACAACAGCGAGACGGAAAAGAA
CATACCGCAGGCCAAGAATCTGAACGCGCTGCTGACCACGGCCAGCTATG
AGAAGCCTAACAAGACGCAGGTTAACCACCACGACAAGCTGGTCTACATC
TACACCTCCGGCACCACAGGATTGCCAAAGGCTGCGGTTATCTCTCACTC
CCGTTATCTGTTTATCGCTGCTGGCATCCACTACACCATGGGTTTCCAGG
AGGAGGACATCTTCTACACACCCTTGCCTTTGTACCACACCGCTGGTGGC
ATTATGTGCATGGGTCAGTCGGTGCTTTTCGGCTCCACGGTCTCCATT
BS09249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7400-PA | 1881 | Fatp-RA | 1..882 | 17..898 | 4285 | 99.4 | Plus |
| CG7400-PB | 1881 | Fatp-RB | 1..882 | 17..898 | 4285 | 99.4 | Plus |
| CG30194-PC | 2016 | CG30194-RC | 481..533 | 377..429 | 165 | 92.4 | Plus |
| CG30194-PB | 2112 | CG30194-RB | 577..629 | 377..429 | 165 | 92.4 | Plus |
| CG30194-PD | 2145 | CG30194-RD | 610..662 | 377..429 | 165 | 92.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fatp-RE | 2374 | CG7400-RE | 80..961 | 17..898 | 4335 | 99.4 | Plus |
| Fatp-RD | 2744 | CG7400-RD | 450..1331 | 17..898 | 4335 | 99.4 | Plus |
| Fatp-RB | 3401 | CG7400-RB | 526..1407 | 17..898 | 4335 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10512935..10513564 | 753..124 | 3120 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10512725..10512870 | 898..753 | 685 | 97.9 | Minus |
| 2R | 25286936 | 2R | 23059470..23059725 | 242..497 | 605 | 82.4 | Plus |
| 2L | 23513712 | 2L | 10516486..10516592 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:39:27 has no hits.
BS09249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:47 Download gff for
BS09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:45 Download gff for
BS09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7400-PB | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:32 Download gff for
BS09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 520..1407 | 9..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:43 Download gff for
BS09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fatp-RB | 520..1407 | 9..898 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:43 Download gff for
BS09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10512725..10512869 | 754..898 | 97 | <- | Minus |
| 2L | 10512935..10513564 | 124..753 | 99 | <- | Minus |
| 2L | 10516486..10516596 | 9..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:32 Download gff for
BS09249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10512725..10512869 | 754..898 | 97 | <- | Minus |
| arm_2L | 10512935..10513564 | 124..753 | 99 | <- | Minus |
| arm_2L | 10516486..10516596 | 9..123 | 96 | | Minus |
BS09249.pep Sequence
Translation from 16 to 1896
> BS09249.pep
MGWIFAVLVALVALLLTKPGWRWFYIAGATASRDLTALWAYIKLLRYTKR
HERLNYTVADVFERNVQAHPDKVAVVSETQRWTFRQVNEHANKVANVLQA
QGYKKGDVVALLLENRAEYVATWLGLSKIGVITPLINTNLRGPSLLHSIT
VAHCSALIYGEDFLEAVTDVAKDLPANLTLFQFNNENNNSETEKNIPQAK
NLNALLTTASYEKPNKTQVNHHDKLVYIYTSGTTGLPKAAVISHSRYLFI
AAGIHYTMGFQEEDIFYTPLPLYHTAGGIMCMGQSVLFGSTVSIRKKFSA
SNYFADCAKYNATIGQYIGEMARYILATKPSEYDQKHRVRLVFGNGLRPQ
IWPQFVQRFNIAKVGEFYGATEGNANIMNHDNTVGAIGFVSRILPKIYPI
SIIRADPDTGEPIRDRNGLCQLCAPNEPGVFIGKIVKGNPSREFLGYVDE
KASAKKIVKDVFKHGDMAFISGDLLVADEKGYLYFKDRTGDTFRWKGENV
STSEVEAQVSNVAGYKDTVVYGVTIPHTEGRAGMAAIYDPERELDLDVFA
ASLAKVLPAYARPQIIRLLTKVDLTGTFKLRKVDLQKEGYDPNAIKDALY
YQTSKGRYELLTPQVYDQVQRNEIRF*
BS09249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fatp-PE | 626 | CG7400-PE | 1..626 | 1..626 | 3265 | 100 | Plus |
| Fatp-PD | 668 | CG7400-PD | 43..668 | 1..626 | 3265 | 100 | Plus |
| Fatp-PB | 626 | CG7400-PB | 1..626 | 1..626 | 3265 | 100 | Plus |
| Fatp-PA | 626 | CG7400-PA | 1..626 | 1..626 | 3265 | 100 | Plus |
| CG44252-PB | 703 | CG44252-PB | 76..703 | 4..626 | 2345 | 69.3 | Plus |
