Clone Sequence Records
BS09254.complete Sequence
2396 bp assembled on 2009-12-07
GenBank Submission: KX803227
> BS09254.complete
GAAGTTATCAGTCGTCATGGAGCCATCGTTGGACAACTACAAGCTGAGCT
GCGAGCTCCTGGGCCACAGCATGGATGTGCGGGCGGTAGCGGTGGGACCT
CCAACTCCGGAAGGTCGCCAGACCATTCTGTCCGGTTCGCGGGACAAGAG
CACCAAAGTCTGGAAGCCCCATGGGAACGAGTACTTGGAAAGCCTTACTT
TGCAGGACCACAAGAACTTCATCTCGTACATCTGCTTCCTGGAGTCGGAG
CGGTGGATCTGCACGGCCAGCAACGACGCCACCATCTGCATCTACAAGCA
GGACGGCTTTGTGCCCCTGTTGACCCTCAAGGGTCACGAGTCCACGGTGT
GTGCTCTCTCGGCAGGATTGGAGCCACGAAGCCTCATCAGCGGCAGCTGG
GACAAGACCGCTCGGGTGTGGACCATCAGCGAGGCGGGTGATGTGTCCTT
CGTTGCTTTAGAGGGACACGAGGCGGCGGTTTGGGCGGTGGCCACCTTGA
AGGAGCAGCGGAAGTATGTGACTGGTGGTGCGGACAGGAACATCTACTAC
TGGAACGCGAAAGGCGAGAAGCTGCGCCTGCTTAAGGGTCACACGGATTG
CGTGAGGGGTGTCATGGGACTGGATGCGAACACACTGCTCTCCTGCGGAA
ATGACGCTGTTCTCCGCTTCTGGAACGAGGATGGTGAGTGCGTGCGCGAG
ATGAACGGACACAGCAACTACATCTACTCCATGGCTCGCAATGAGGCTCT
GGGCGACCAAGTGGTGGTCTCCTGCGGCGAGGACAGCACGTTGCGCATGT
GGAATGTGATCACCGGCGATGAGCTGGGAGCACCCATCATCCATCCCGGC
ATTTCAGTGTGGTCCGTAACGTGCCTACAGAACGGGGACATTGTCACCGG
CTGTAGCGATGGTGTGGTGAGGGTATTCAGCCACGTTCCTGCTCGCCAAG
CAAGTGAAGCAGTCCTTAAAGCCTTCGACTTAGTAGTGGCAACTAGAAAG
TCTCAGATTAATGAGGAGATTGGTGGCGTCAAGAAAACTGACCTTCCAGG
TCCGGAGGCTCTTCTGTCCAATGGAACGCGCGAGGGTCAAACGAAGATGG
TGCGCCATGCCGATGGTTCCGTGAAGTGCTACACCTGGACGCTGGGTAAC
TGGAACTTGGTAGGCGATGTAACTGGCGCAACTGGAGGAACCCAGTCGAA
CTCCGGCAAGAAACTGCACGAGGGCAAGGAGTACGACTTTGTGTTCAGCG
TGGACATTTCCGACACGGAGCCACCTATCAAGTTGCCCTACAACCGCAGC
GACGATCCGTGGCAGGCGGCCCAGACCTTCATCCATCGCCATAGCCTTCC
ACAGGCCTACCTCGACCAGGTGGCCAACTTTATTATAAAGAACTCGGAAG
GCCCCGTGCTGATGGAGCAGGCGCCAACCGGCTATCAGGATCCATTTACT
GGTGGCTCCCGCTATGTTCCTGGATCGAGCAACACCAATATGGGAAGCGG
CGGCAATGTGGATCCCTTCACTGGAGCCTCGAGTTACTCCACAGCGAGTA
GCAATGCTCAGTCGCAGGTGGATGTAAACTTTGTGCGGTCTGGCGACAAA
CACTTTCCCGTCAGCAACTACCGCATCTTCGACACCTGTGATGCCAAGAA
GGTGCTAGAGAAAATGATAGAGTTCAATGGCAAACTAAGCCTACCTGATG
GAAGAGTGGGAGAGGAGGTCTTGTTGGCCGTAATCAAACTCGCCGATCAA
TCGCCTGAGCTCGATCTGACCTCCCTGGAAGCTCTGGCCATCCTGCTGAA
GTGGCCGGCGTCCATGCAGTTCCCCGTGCTGGACATCCTTCGCCTGGCCG
TGCGAAATGAAGCCATCTTCAGTGTCCTGAACAACAGTCACAACTTCCTG
GCGACCGTTATCCCTCAATTGAGCGGCTCGGCACCCAACCAGCTCATGGT
GGTGCGCTGCCTGGCCAACATCATGAGCCACGCCGCCGGCCGGCAAAATG
TGATGTCCCGTCTGGCGGAGATCATCGATCTCGTGGGAGCCATCAAGACG
GGCAGTGCCAATCTGCAAATTGCCGTGGCCACCTTCTATTTGAACCTCAC
AATCTCCCAGACTCTGGACGTGGCGAAGTCGGAGGTGTGTCATGTGGTCA
CCTCCGGTATTGTGGAGCTGCTCAAGTGGGCCAAGGACTTGGAAGCGTGC
TACCGTTCCATGCAGGCCATCGGCAACCTGACCACCACTTCGTGCGGCCA
AGAGACCATTGCGCAGGTGGTGTCCGTGGACTATGTGATGGACAAGTTGA
GGGAACTTACCATTACTCCGCAGGACAAGAACTTCAGCAAGGTGAATTCT
GTGGGCCAGGCCCTGCTGGCTGTGTTCTAAAAGCTTTCTAGACCAT
BS09254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2364 | CG5105-PB | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| Plap-RC | 2364 | CG5105-PC | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| Plap-RA | 2364 | CG5105-PA | 1..2364 | 17..2380 | 11820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2592 | CG5105-RB | 157..2521 | 16..2380 | 11825 | 100 | Plus |
| Plap-RC | 2746 | CG5105-RC | 311..2675 | 16..2380 | 11825 | 100 | Plus |
| Plap-RA | 2729 | CG5105-RA | 294..2658 | 16..2380 | 11825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1168695..1169566 | 1041..170 | 4345 | 99.9 | Minus |
| 2L | 23513712 | 2L | 1167243..1167954 | 2380..1669 | 3560 | 100 | Minus |
| 2L | 23513712 | 2L | 1168012..1168638 | 1668..1042 | 3135 | 100 | Minus |
| 2L | 23513712 | 2L | 1169627..1169786 | 175..16 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:18:58 has no hits.
BS09254.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:14 Download gff for
BS09254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 295..2656 | 17..2378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:17 Download gff for
BS09254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 295..2656 | 17..2378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:25 Download gff for
BS09254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 295..2656 | 17..2378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:47 Download gff for
BS09254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 295..2656 | 17..2378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:47 Download gff for
BS09254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1167245..1167954 | 1669..2378 | 100 | <- | Minus |
| 2L | 1168012..1168638 | 1042..1668 | 100 | <- | Minus |
| 2L | 1168695..1169561 | 175..1041 | 100 | <- | Minus |
| 2L | 1169628..1169785 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:17 Download gff for
BS09254.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1169628..1169785 | 17..174 | 100 | | Minus |
| arm_2L | 1167245..1167954 | 1669..2378 | 100 | <- | Minus |
| arm_2L | 1168012..1168638 | 1042..1668 | 100 | <- | Minus |
| arm_2L | 1168695..1169561 | 175..1041 | 100 | <- | Minus |
BS09254.3prime Sequence
898 bp (854 high quality bases) assembled on 2006-01-29
> BS09254.3prime
ATGGTCTAGAAAGCTTTTAGAACACAGCCAGCAGGGCCTGGCCCACAGAA
TTCACCTTGCTGAAGTTCTTGTCCTGCGGAGTAATGGTAAGTTCCCTCAA
CTTGTCCATCACATAGTCCACGGACACCACCTGCGCAATGGTCTCTTGGC
CGCACGAAGTGGTGGTCAGGTTGCCGATGGCCTGCATGGAACGGTAGCAC
GCTTCCAAGTCCTTGGCCCACTTGAGCAGCTCCACAATACCGGAGGTGAC
CACATGACACACCTCCGACTTCGCCACGTCCAGAGTCTGGGAGATTGTGA
GGTTCAAATAGAAGGTGGCCACGGCAATTTGCAGATTGGCACTGCCCGTC
TTGATGGCTCCCACGAGATCGATGATCTCCGCCAGACGGGACATCACATT
TTGCCGGCCGGCGGCGTGGCTCATGATGTTGGCCAGGCAGCGCACCACCA
TGAGCTGGTTGGGTGCCGAGCCGCTCAATTGAGGGATAACGGTCGCCAGG
AAGTTGTGACTGTTGTTCAGGACACTGAAGATGGCTTCATTTCGCACGGC
CAGGCGAAGGATGTCCAGCACGGGGAACTGCATGGACGCCGGCCACTTCA
GCAGGATGGCCAGAGCTTCCAGGGAGGTCAGATCGAGCTCAGGCGATTGA
TCGGCGAGTTTGATTACGGCCAACAAGACCTCCTCTCCCACTCTTCCATC
AGGTAGGCTTAGTTTGCCATTGAACTCTATCATTTTCTCTAGCACCTTCT
TGGCATCACAGGTGTCGAAGATGCGGTAGTTGCTGACGGGAAAGTGTTTG
TCGCCAGACCGCACAAAGTTTACATCCACCTGCGACTGAGCATTGCTACT
CGCTGTGGAGTAACTCGAGGCTCCAGTGAAAGGATCCACATTGCCGCC
BS09254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5105-PA | 2364 | Plap-RA | 1483..2364 | 898..17 | 4385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2592 | CG5105-RB | 1640..2521 | 898..17 | 4395 | 99.9 | Minus |
| Plap-RC | 2746 | CG5105-RC | 1794..2675 | 898..17 | 4395 | 99.9 | Minus |
| Plap-RA | 2729 | CG5105-RA | 1777..2658 | 898..17 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1167243..1167954 | 17..728 | 3560 | 100 | Plus |
| 2L | 23513712 | 2L | 1168012..1168181 | 729..898 | 835 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:57:42 has no hits.
BS09254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:56 Download gff for
BS09254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-PA | 1483..2364 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:55 Download gff for
BS09254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5105-PA | 1483..2364 | 17..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:57:48 Download gff for
BS09254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 1777..2663 | 12..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:03 Download gff for
BS09254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 1777..2663 | 12..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:03 Download gff for
BS09254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1167238..1167954 | 12..728 | 99 | <- | Plus |
| 2L | 1168012..1168181 | 729..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:57:48 Download gff for
BS09254.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1168012..1168181 | 729..898 | 99 | | Plus |
| arm_2L | 1167238..1167954 | 12..728 | 99 | <- | Plus |
BS09254.5prime Sequence
944 bp (817 high quality bases) assembled on 2006-01-29
> BS09254.5prime
GAAGTTATCAGTCGTCATGGAGCCATCGTTGGACAACTACAAGCTGAGCT
GCGAGCTCCTGGGCCACAGCATGGATGTGCGGGCGGTAGCGGTGGGACCT
CCAACTCCGGAAGGTCGCCAGACCATTCTGTCCGGTTCGCGGGACAAGAG
CACCAAAGTCTGGAAGCCCCATGGGAACGAGTACTTGGAAAGCCTTACTT
TGCAGGACCACAAGAACTTCATCTCGTACATCTGCTTCCTGGAGTCGGAG
CGGTGGATCTGCACGGCCAGCAACGACGCCACCATCTGCATCTACAAGCA
GGACGGCTTTGTGCCCCTGTTGACCCTCAAGGGTCACGAGTCCACGGTGT
GTGCTCTCTCGGCAGGATTGGAGCCACGAAGCCTCATCAGCGGCAGCTGG
GACAAGACCGCTCGGGTGTGGACCATCAGCGAGGCGGGTGATGTGTCCTT
CGTTGCTTTAGAGGGACACGAGGCGGCGGTTTGGGCGGTGGCCACCTTGA
AGGAGCAGCGGAAGTATGTGACTGGTGGTGCGGACAGGAACATCTACTAC
TGGAACGCGAAAGGCGAGAAGCTGCGCCTGCTTAAGGGTCACACGGATTG
CGTGAGGGGTGTCATGGGACTGGATGCGAACACACTGCTCTCCTGCGGAA
ATGACGCTGTTCTCCGCTTCTGGAACGAGGATGGTGAGTGCGTGCGCGAG
ATGAACGGACACAGCAACTACATCTACTCCATGGCTCGCAATGAGGCTCT
GGGCGACCAAGTGGTGGTCTCCTGCGGCGAGGACAGCACGTTGCGCATGT
GGAATGTGATCACCGGCGATGAGCTGGGAGCACCCATCATCCATCCCGGC
ATTTCAGTGTGGTCCGTAACGTGCCTACAGAACGGGGACATTGTCACCGG
CTGTAGCGATGGTGTGGTGAGGGTATTCAGCCACGTTCCTGCTC
BS09254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5105-PA | 2364 | Plap-RA | 1..928 | 17..944 | 4640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:14:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2592 | CG5105-RB | 157..1085 | 16..944 | 4645 | 100 | Plus |
| Plap-RC | 2746 | CG5105-RC | 311..1239 | 16..944 | 4645 | 100 | Plus |
| Plap-RA | 2729 | CG5105-RA | 294..1222 | 16..944 | 4645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1168792..1169566 | 944..170 | 3860 | 99.9 | Minus |
| 2L | 23513712 | 2L | 1169627..1169786 | 175..16 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:14:02 has no hits.
BS09254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:56 Download gff for
BS09254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-PA | 1..928 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:56 Download gff for
BS09254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5105-PA | 1..928 | 17..944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:11:39 Download gff for
BS09254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 290..1222 | 9..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:15 Download gff for
BS09254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 290..1222 | 9..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:15 Download gff for
BS09254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1168792..1169561 | 175..944 | 100 | <- | Minus |
| 2L | 1169628..1169790 | 9..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:11:39 Download gff for
BS09254.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1168792..1169561 | 175..944 | 100 | <- | Minus |
| arm_2L | 1169628..1169790 | 9..174 | 97 | | Minus |
BS09254.pep Sequence
Translation from 16 to 2379
> BS09254.pep
MEPSLDNYKLSCELLGHSMDVRAVAVGPPTPEGRQTILSGSRDKSTKVWK
PHGNEYLESLTLQDHKNFISYICFLESERWICTASNDATICIYKQDGFVP
LLTLKGHESTVCALSAGLEPRSLISGSWDKTARVWTISEAGDVSFVALEG
HEAAVWAVATLKEQRKYVTGGADRNIYYWNAKGEKLRLLKGHTDCVRGVM
GLDANTLLSCGNDAVLRFWNEDGECVREMNGHSNYIYSMARNEALGDQVV
VSCGEDSTLRMWNVITGDELGAPIIHPGISVWSVTCLQNGDIVTGCSDGV
VRVFSHVPARQASEAVLKAFDLVVATRKSQINEEIGGVKKTDLPGPEALL
SNGTREGQTKMVRHADGSVKCYTWTLGNWNLVGDVTGATGGTQSNSGKKL
HEGKEYDFVFSVDISDTEPPIKLPYNRSDDPWQAAQTFIHRHSLPQAYLD
QVANFIIKNSEGPVLMEQAPTGYQDPFTGGSRYVPGSSNTNMGSGGNVDP
FTGASSYSTASSNAQSQVDVNFVRSGDKHFPVSNYRIFDTCDAKKVLEKM
IEFNGKLSLPDGRVGEEVLLAVIKLADQSPELDLTSLEALAILLKWPASM
QFPVLDILRLAVRNEAIFSVLNNSHNFLATVIPQLSGSAPNQLMVVRCLA
NIMSHAAGRQNVMSRLAEIIDLVGAIKTGSANLQIAVATFYLNLTISQTL
DVAKSEVCHVVTSGIVELLKWAKDLEACYRSMQAIGNLTTTSCGQETIAQ
VVSVDYVMDKLRELTITPQDKNFSKVNSVGQALLAVF*
BS09254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-PB | 787 | CG5105-PB | 1..787 | 1..787 | 4096 | 100 | Plus |
| Plap-PC | 787 | CG5105-PC | 1..787 | 1..787 | 4096 | 100 | Plus |
| Plap-PA | 787 | CG5105-PA | 1..787 | 1..787 | 4096 | 100 | Plus |
| ago-PA | 1326 | CG15010-PA | 1008..1263 | 37..304 | 239 | 30.5 | Plus |
| ago-PB | 1326 | CG15010-PB | 1008..1263 | 37..304 | 239 | 30.5 | Plus |
