Clone Sequence Records
BS09255.3prime Sequence
943 bp (804 high quality bases) assembled on 2006-01-29
> BS09255.3prime
ATGGTCTAGAAAGCTTTTAAGTCTTGAGCGGATAGACCGGCAGTGGATGG
CCCTCCGAATTGAAGACCCATTGCTCCAGGTCGATTTCCTTGCGGTCGTC
GCTAAACAGCAGGTAGAAGTACTTCAGGGTCTCGCTCATCCAAAAGCTTT
CCATCAGATCGCGCAGACGCGTGCTCTGTGTGTTCTTTACATTTCCCATC
GATGTGTAGCCTGCATTTACTTTAGCGTGAGTCTCAAACGCCTGGAAAAT
TTTCCATCCCATGTCCTGGTATGTCCGATTGCCAGTTATTGAGTAGAAGT
AATAGAGACTCTCCACAAACTCCGGGCGCAACAGGTTGTGGGCATCGTTT
GGCTTCACATAAATGTCCTGATCGTCCTTTTCGGTTAGCGCGAAATACGA
GATCTCAGCAGCCAAATGTGTGGGATTCATCATATAGGTCTGATAGCATG
TATCCAATAAATCCCTCGCAAGTATAAGGTGCGAGTCTGGCATTCCGTTC
TGGTGACCCAGAATCAAAGTGCCCGGCAGATAACACGTAAGGTGATCCAT
TTTCGGCTTAAAGTCTTTGCCATTGATCAGCTCGCCAATGTAAACCCAGT
GCTCGCGTGGCGTACGCCGCATCAGTTGTGTTAGAACACCATCGACTGCT
TGCATGTAGTCCAAAATAAGGTTATCATTATCCTTGCGGCCGGTCTGAAT
CCACTGTTTGAGCAAGTACTCATAGTAGGAGTCCCCACGAGCACCAAGCG
AGATAGTGGCGTAGTTTCGGAATGTTCCTGTGTTGGCGTTAATGAATATG
GGCACCAAACCATGGTTCTTCTCCAGATCATGCACCTTCTCGTTTACTTT
GTGAGCAACCTGTTCATAAATGGAGATGTTTGTAGAGCGACTCAAATCAC
GAAACTCTAGCTGAATGGTGGTGACCTCACTGGTGGAGCTATC
BS09255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11874-PA | 2058 | CG11874-RA | 1132..2058 | 943..17 | 4535 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-Ib-RA | 3211 | CG11874-RA | 1457..2383 | 943..17 | 4575 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29109881..29110535 | 17..671 | 3215 | 99.4 | Plus |
3R | 32079331 | 3R | 29110689..29110879 | 672..862 | 955 | 100 | Plus |
3R | 32079331 | 3R | 29110933..29111018 | 858..943 | 430 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 749..870 | 178..302 | 114 | 56 | Plus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8631..8752 | 178..302 | 114 | 56 | Plus |
BS09255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:58 Download gff for
BS09255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11874-PA | 1132..2058 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:58 Download gff for
BS09255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11874-PA | 1132..2058 | 17..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:39 Download gff for
BS09255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-Ib-RA | 1457..2385 | 12..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:24 Download gff for
BS09255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-Ib-RA | 1457..2385 | 12..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:24 Download gff for
BS09255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29110689..29110876 | 672..859 | 100 | <- | Plus |
3R | 29110935..29111018 | 860..943 | 100 | | Plus |
3R | 29109879..29110535 | 12..671 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:39 Download gff for
BS09255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24935601..24936257 | 12..671 | 98 | <- | Plus |
arm_3R | 24936411..24936598 | 672..859 | 100 | <- | Plus |
arm_3R | 24936657..24936740 | 860..943 | 100 | | Plus |
BS09255.5prime Sequence
870 bp (869 high quality bases) assembled on 2006-01-28
> BS09255.5prime
GAAGTTATCAGTCGACATGAAGGACGGCGGTCACATAACGCTCACACTCC
CGCCGGGATCAGCGGCGACGACGGACGAGCGGGGCAGGAAGAGCCTGCGT
CGGGCTTGGAATCAGCTACCGCGTTGTCAGCGCAATCTCATTATTCTGGG
CATCACCGGATTCTGCGTGACAGTGTTGCTCTGCCTAAGTGGCGATCAGC
TGCTGGCTGCCAGCTTAAAGGATGTGGACACCAAGGCCGAGGTGGCAGCA
TATCAAATGCCCCTGCCCAATCCGCACCATCATCCGGGGGTGGATAAGGA
TGTGCCCAAAGACACTGCTGCGGTACCTGTTCCGGCCGATAAGAGAGCAC
CCCGGGTGGAGGCGGTTAGTGATAAGTTTAATGAGCTAGTTGCCTATGGA
GAAGCGAACTCAGCGGAGAACGTGGCCCGTCTGCCGGAGACGGTGGCTGC
TGAAGGACTTCCCCAGGCCTCGGCCATGGCCGTGGCCTTGCCTCCCCCCG
ATAGTAACAAGGAGCAGGACATCGGTGGAATCGACATCCTAAACAATGTA
GAGGAGCCCGTCGCCCAGGATCCAGCAGAGCCGCTAAGCGAGGGCGAGCA
GCTTGAGCAAGCCATCAAGAACCCACTCACTCTGGGCGGCGTTAGCTTCA
AAGAGCATCTCAAAAAGATCAAGCCCATTTTGGCCAAGGGCCAGCACTTC
CATGGCGCCACCAACGAAAGACAGTCGGCTGTGGTAGCCGCCTTTAAGCA
CTCCTGGGCTGGCTACAAGAAGTATGCCTGGGGCCACGACAACCTGAAGC
CCATCTCCCAGTACTCCCACGAGTGGTTCGGTCTGGGACTAACCATTGTT
GACTCATTGGATACCATGTA
BS09255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11874-PA | 2058 | CG11874-RA | 1..854 | 17..870 | 4170 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-Ib-RA | 3211 | CG11874-RA | 326..1179 | 17..870 | 4210 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29111379..29111874 | 870..375 | 2420 | 99.2 | Minus |
3R | 32079331 | 3R | 29112041..29112314 | 376..103 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 29112410..29112497 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:39:20 has no hits.
BS09255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:59 Download gff for
BS09255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11874-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:59 Download gff for
BS09255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11874-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:30 Download gff for
BS09255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-Ib-RA | 326..1178 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:15 Download gff for
BS09255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-Ib-RA | 326..1178 | 17..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:15 Download gff for
BS09255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29111380..29111872 | 377..869 | 99 | <- | Minus |
3R | 29112041..29112313 | 104..376 | 100 | <- | Minus |
3R | 29112411..29112497 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:30 Download gff for
BS09255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24937102..24937594 | 377..869 | 99 | <- | Minus |
arm_3R | 24937763..24938035 | 104..376 | 100 | <- | Minus |
arm_3R | 24938133..24938219 | 17..103 | 100 | | Minus |
BS09255.complete Sequence
2090 bp assembled on 2008-08-14
GenBank Submission: FJ636382
> BS09255.complete
GAAGTTATCAGTCGACATGAAGGACGGCGGTCACATAACGCTCACACTCC
CGCCGGGATCAGCGGCGACGACGGACGAGCGGGGCAGGAAGAGCCTGCGT
CGGGCTTGGAATCAGCTACCGCGTTGTCAGCGCAATCTCATTATTCTGGG
CATCACCGGATTCTGCGTGACAGTGTTGCTCTGCCTAAGTGGCGATCAGC
TGCTGGCTGCCAGCTTAAAGGATGTGGACACCAAGGCCGAGGTGGCAGCA
TATCAAATGCCCCTGCCCAATCCGCACCATCATCCGGGGGTGGATAAGGA
TGTGCCCAAAGACACTGCTGCGGTACCTGTTCCGGCCGATAAGAGAGCAC
CCCGGGTGGAGGCGGTTAGTGATAAGTTTAATGAGCTAGTTGCCTATGGA
GAAGCGAACTCAGCGGAGAACGTGGCCCGTCTGCCGGAGACGGTGGCTGC
TGAAGGACTTCCCCAGGCCTCGGCCATGGCCGTGGCCTTGCCTCCCCCCG
ATAGTAACAAGGAGCAGGACATCGGTGGAATCGACATCCTAAACAATGTA
GAGGAGCCCGTCGCCCAGGATCCAGCAGAGCCGCTAAGCGAGGGCGAGCA
GCTTGAGCAAGCCATCAAGAACCCACTCACTCTGGGCGGCGTTAGCTTCA
AAGAGCATCTCAAAAAGATCAAGCCCATTTTGGCCAAGGGCCAGCACTTC
CATGGCGCCACCAACGAAAGACAGTCGGCTGTGGTAGCCGCCTTTAAGCA
CTCCTGGGCTGGCTACAAGAAGTATGCCTGGGGCCACGACAACCTGAAGC
CCATCTCCCAGTACTCCCACGAGTGGTTCGGTCTGGGACTAACCATTGTT
GACTCATTGGATACCATGTACATAATGGGACTGGATGATGAATTCAAGGA
AGGACGCGACTGGGTAGAGCAATCACTGCGCTTTGATACCAAGCGCGATG
TAAACCTATTCGAGGTCACCATACGTGTCCTAGGCGGACTGCTGTCTGCA
TATCACCTGAGCGGCGATACAATGTTTCTGGCCAAGGCTGCGGAGCTGGG
CAACCGTTTACTTCCCGCCTTTCAATCGCCGTCAAATATCCCCTATTCTG
ATGTGAATCTCGGAGATCTTTCGGCGCACTCGCCGAAGTGGTCTCCTGAT
AGCTCCACCAGTGAGGTCACCACCATTCAGCTAGAGTTTCGTGATTTGAG
TCGCTCTACAAACATCTCCATTTATGAACAGGTTGCTCACAAAGTAAACG
AGAAGGTGCATGATCTGGAGAAGAACCATGGTTTGGTGCCCATATTCATT
AACGCCAACACAGGAACATTCCGAAACTACGCCACTATCTCGCTTGGTGC
TCGTGGGGACTCCTACTATGAGTACTTGCTCAAACAGTGGATTCAGACCG
GCCGCAAGGATAATGATAACCTTATTTTGGACTACATGCAAGCAGTCGAT
GGTGTTCTAACACAACTGATGCGGCGTACGCCACGCGAGCACTGGGTTTA
CATTGGCGAGCTGATCAATGGCAAAGACTTTAAGCCGAAAATGGATCACC
TTACGTGTTATCTGCCGGGCACTTTGATTCTGGGTCACCAGAACGGAATG
CCAGACTCGCACCTTATACTTGCGAGGGATTTATTGGATACATGCTATCA
GACCTATATGATGAATCCCACACATTTGGCTGCTGAGATCTCGTATTTCG
CGCTAACCGAAAAGGACGATCAGGACATTTATGTGAAGCCAAACGATGCC
CACAACCTGTTGCGCCCGGAGTTTGTGGAGAGTCTCTATTACTTCTACTC
AATAACTGGCAATCGGACATACCAGGACATGGGATGGAAAATTTTCCAGG
CGTTTGAGACTCACGCTAAAGTAAATGCAGGCTACACATCGATGGGAAAT
GTAAAGAACACACAGAGCACGCGTCTGCGCGATCTGATGGAAAGCTTTTG
GATGAGCGAGACCCTGAAGTACTTCTACCTGCTGTTTAGCGACGACCGCA
AGGAAATCGACCTGGAGCAATGGGTCTTCAATTCGGAGGGCCATCCACTG
CCGGTCTATCCGCTCAAGACTTAAAAGCTTTCTAGACCAT
BS09255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-Ib-RA | 2058 | CG11874-PA | 1..2058 | 17..2074 | 10140 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-Ib-RA | 3211 | CG11874-RA | 326..2383 | 17..2074 | 10140 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29109881..29110535 | 2074..1420 | 3215 | 99.4 | Minus |
3R | 32079331 | 3R | 29111359..29111874 | 890..375 | 2520 | 99.2 | Minus |
3R | 32079331 | 3R | 29110933..29111276 | 1233..890 | 1690 | 99.4 | Minus |
3R | 32079331 | 3R | 29112041..29112314 | 376..103 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 29110689..29110879 | 1419..1229 | 955 | 100 | Minus |
3R | 32079331 | 3R | 29112410..29112497 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 749..870 | 1913..1789 | 114 | 56 | Minus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8631..8752 | 1913..1789 | 114 | 56 | Minus |
BS09255.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:45 Download gff for
BS09255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11874-RA | 308..2367 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:41 Download gff for
BS09255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-Ib-RA | 326..2381 | 17..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:08 Download gff for
BS09255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11874-RA | 308..2363 | 17..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:45 Download gff for
BS09255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Man-Ib-RA | 326..2381 | 17..2072 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:45 Download gff for
BS09255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29109883..29110535 | 1420..2072 | 99 | <- | Minus |
3R | 29110689..29110876 | 1232..1419 | 100 | <- | Minus |
3R | 29110935..29111275 | 891..1231 | 99 | <- | Minus |
3R | 29111359..29111872 | 377..890 | 99 | <- | Minus |
3R | 29112041..29112313 | 104..376 | 100 | <- | Minus |
3R | 29112411..29112497 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:41 Download gff for
BS09255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24935605..24936257 | 1420..2072 | 99 | <- | Minus |
arm_3R | 24936411..24936598 | 1232..1419 | 100 | <- | Minus |
arm_3R | 24936657..24936997 | 891..1231 | 99 | <- | Minus |
arm_3R | 24937081..24937594 | 377..890 | 99 | <- | Minus |
arm_3R | 24937763..24938035 | 104..376 | 100 | <- | Minus |
arm_3R | 24938133..24938219 | 17..103 | 100 | | Minus |
BS09255.pep Sequence
Translation from 16 to 2073
> BS09255.pep
MKDGGHITLTLPPGSAATTDERGRKSLRRAWNQLPRCQRNLIILGITGFC
VTVLLCLSGDQLLAASLKDVDTKAEVAAYQMPLPNPHHHPGVDKDVPKDT
AAVPVPADKRAPRVEAVSDKFNELVAYGEANSAENVARLPETVAAEGLPQ
ASAMAVALPPPDSNKEQDIGGIDILNNVEEPVAQDPAEPLSEGEQLEQAI
KNPLTLGGVSFKEHLKKIKPILAKGQHFHGATNERQSAVVAAFKHSWAGY
KKYAWGHDNLKPISQYSHEWFGLGLTIVDSLDTMYIMGLDDEFKEGRDWV
EQSLRFDTKRDVNLFEVTIRVLGGLLSAYHLSGDTMFLAKAAELGNRLLP
AFQSPSNIPYSDVNLGDLSAHSPKWSPDSSTSEVTTIQLEFRDLSRSTNI
SIYEQVAHKVNEKVHDLEKNHGLVPIFINANTGTFRNYATISLGARGDSY
YEYLLKQWIQTGRKDNDNLILDYMQAVDGVLTQLMRRTPREHWVYIGELI
NGKDFKPKMDHLTCYLPGTLILGHQNGMPDSHLILARDLLDTCYQTYMMN
PTHLAAEISYFALTEKDDQDIYVKPNDAHNLLRPEFVESLYYFYSITGNR
TYQDMGWKIFQAFETHAKVNAGYTSMGNVKNTQSTRLRDLMESFWMSETL
KYFYLLFSDDRKEIDLEQWVFNSEGHPLPVYPLKT*
BS09255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Man-Ib-PA | 685 | CG11874-PA | 1..685 | 1..685 | 3622 | 100 | Plus |
alpha-Man-I-PP | 643 | CG42275-PP | 175..623 | 234..680 | 802 | 37.6 | Plus |
alpha-Man-I-PK | 643 | CG42275-PK | 175..623 | 234..680 | 802 | 37.6 | Plus |
alpha-Man-I-PO | 667 | CG42275-PO | 123..647 | 150..680 | 800 | 34.7 | Plus |
alpha-Man-I-PN | 667 | CG42275-PN | 123..647 | 150..680 | 800 | 34.7 | Plus |