Clone BS09255 Report

Search the DGRC for BS09255

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:55
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Man-Ib-RA
Protein status:BS09255.pep: full length peptide match
Sequenced Size:2090

Clone Sequence Records

BS09255.3prime Sequence

943 bp (804 high quality bases) assembled on 2006-01-29

> BS09255.3prime
ATGGTCTAGAAAGCTTTTAAGTCTTGAGCGGATAGACCGGCAGTGGATGG
CCCTCCGAATTGAAGACCCATTGCTCCAGGTCGATTTCCTTGCGGTCGTC
GCTAAACAGCAGGTAGAAGTACTTCAGGGTCTCGCTCATCCAAAAGCTTT
CCATCAGATCGCGCAGACGCGTGCTCTGTGTGTTCTTTACATTTCCCATC
GATGTGTAGCCTGCATTTACTTTAGCGTGAGTCTCAAACGCCTGGAAAAT
TTTCCATCCCATGTCCTGGTATGTCCGATTGCCAGTTATTGAGTAGAAGT
AATAGAGACTCTCCACAAACTCCGGGCGCAACAGGTTGTGGGCATCGTTT
GGCTTCACATAAATGTCCTGATCGTCCTTTTCGGTTAGCGCGAAATACGA
GATCTCAGCAGCCAAATGTGTGGGATTCATCATATAGGTCTGATAGCATG
TATCCAATAAATCCCTCGCAAGTATAAGGTGCGAGTCTGGCATTCCGTTC
TGGTGACCCAGAATCAAAGTGCCCGGCAGATAACACGTAAGGTGATCCAT
TTTCGGCTTAAAGTCTTTGCCATTGATCAGCTCGCCAATGTAAACCCAGT
GCTCGCGTGGCGTACGCCGCATCAGTTGTGTTAGAACACCATCGACTGCT
TGCATGTAGTCCAAAATAAGGTTATCATTATCCTTGCGGCCGGTCTGAAT
CCACTGTTTGAGCAAGTACTCATAGTAGGAGTCCCCACGAGCACCAAGCG
AGATAGTGGCGTAGTTTCGGAATGTTCCTGTGTTGGCGTTAATGAATATG
GGCACCAAACCATGGTTCTTCTCCAGATCATGCACCTTCTCGTTTACTTT
GTGAGCAACCTGTTCATAAATGGAGATGTTTGTAGAGCGACTCAAATCAC
GAAACTCTAGCTGAATGGTGGTGACCTCACTGGTGGAGCTATC

BS09255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11874-PA 2058 CG11874-RA 1132..2058 943..17 4535 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-Ib-RA 3211 CG11874-RA 1457..2383 943..17 4575 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29109881..29110535 17..671 3215 99.4 Plus
3R 32079331 3R 29110689..29110879 672..862 955 100 Plus
3R 32079331 3R 29110933..29111018 858..943 430 100 Plus
Blast to na_te.dros performed 2015-02-10 18:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 749..870 178..302 114 56 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8631..8752 178..302 114 56 Plus

BS09255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:58 Download gff for BS09255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11874-PA 1132..2058 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:58 Download gff for BS09255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11874-PA 1132..2058 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:39 Download gff for BS09255.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-Ib-RA 1457..2385 12..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:24 Download gff for BS09255.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-Ib-RA 1457..2385 12..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:24 Download gff for BS09255.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29110689..29110876 672..859 100 <- Plus
3R 29110935..29111018 860..943 100   Plus
3R 29109879..29110535 12..671 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:39 Download gff for BS09255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24935601..24936257 12..671 98 <- Plus
arm_3R 24936411..24936598 672..859 100 <- Plus
arm_3R 24936657..24936740 860..943 100   Plus

BS09255.5prime Sequence

870 bp (869 high quality bases) assembled on 2006-01-28

> BS09255.5prime
GAAGTTATCAGTCGACATGAAGGACGGCGGTCACATAACGCTCACACTCC
CGCCGGGATCAGCGGCGACGACGGACGAGCGGGGCAGGAAGAGCCTGCGT
CGGGCTTGGAATCAGCTACCGCGTTGTCAGCGCAATCTCATTATTCTGGG
CATCACCGGATTCTGCGTGACAGTGTTGCTCTGCCTAAGTGGCGATCAGC
TGCTGGCTGCCAGCTTAAAGGATGTGGACACCAAGGCCGAGGTGGCAGCA
TATCAAATGCCCCTGCCCAATCCGCACCATCATCCGGGGGTGGATAAGGA
TGTGCCCAAAGACACTGCTGCGGTACCTGTTCCGGCCGATAAGAGAGCAC
CCCGGGTGGAGGCGGTTAGTGATAAGTTTAATGAGCTAGTTGCCTATGGA
GAAGCGAACTCAGCGGAGAACGTGGCCCGTCTGCCGGAGACGGTGGCTGC
TGAAGGACTTCCCCAGGCCTCGGCCATGGCCGTGGCCTTGCCTCCCCCCG
ATAGTAACAAGGAGCAGGACATCGGTGGAATCGACATCCTAAACAATGTA
GAGGAGCCCGTCGCCCAGGATCCAGCAGAGCCGCTAAGCGAGGGCGAGCA
GCTTGAGCAAGCCATCAAGAACCCACTCACTCTGGGCGGCGTTAGCTTCA
AAGAGCATCTCAAAAAGATCAAGCCCATTTTGGCCAAGGGCCAGCACTTC
CATGGCGCCACCAACGAAAGACAGTCGGCTGTGGTAGCCGCCTTTAAGCA
CTCCTGGGCTGGCTACAAGAAGTATGCCTGGGGCCACGACAACCTGAAGC
CCATCTCCCAGTACTCCCACGAGTGGTTCGGTCTGGGACTAACCATTGTT
GACTCATTGGATACCATGTA

BS09255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11874-PA 2058 CG11874-RA 1..854 17..870 4170 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-Ib-RA 3211 CG11874-RA 326..1179 17..870 4210 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29111379..29111874 870..375 2420 99.2 Minus
3R 32079331 3R 29112041..29112314 376..103 1370 100 Minus
3R 32079331 3R 29112410..29112497 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:39:20 has no hits.

BS09255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:03:59 Download gff for BS09255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11874-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:11:59 Download gff for BS09255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11874-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:14:30 Download gff for BS09255.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-Ib-RA 326..1178 17..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:15 Download gff for BS09255.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-Ib-RA 326..1178 17..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:15 Download gff for BS09255.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29111380..29111872 377..869 99 <- Minus
3R 29112041..29112313 104..376 100 <- Minus
3R 29112411..29112497 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:14:30 Download gff for BS09255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24937102..24937594 377..869 99 <- Minus
arm_3R 24937763..24938035 104..376 100 <- Minus
arm_3R 24938133..24938219 17..103 100   Minus

BS09255.complete Sequence

2090 bp assembled on 2008-08-14

GenBank Submission: FJ636382

> BS09255.complete
GAAGTTATCAGTCGACATGAAGGACGGCGGTCACATAACGCTCACACTCC
CGCCGGGATCAGCGGCGACGACGGACGAGCGGGGCAGGAAGAGCCTGCGT
CGGGCTTGGAATCAGCTACCGCGTTGTCAGCGCAATCTCATTATTCTGGG
CATCACCGGATTCTGCGTGACAGTGTTGCTCTGCCTAAGTGGCGATCAGC
TGCTGGCTGCCAGCTTAAAGGATGTGGACACCAAGGCCGAGGTGGCAGCA
TATCAAATGCCCCTGCCCAATCCGCACCATCATCCGGGGGTGGATAAGGA
TGTGCCCAAAGACACTGCTGCGGTACCTGTTCCGGCCGATAAGAGAGCAC
CCCGGGTGGAGGCGGTTAGTGATAAGTTTAATGAGCTAGTTGCCTATGGA
GAAGCGAACTCAGCGGAGAACGTGGCCCGTCTGCCGGAGACGGTGGCTGC
TGAAGGACTTCCCCAGGCCTCGGCCATGGCCGTGGCCTTGCCTCCCCCCG
ATAGTAACAAGGAGCAGGACATCGGTGGAATCGACATCCTAAACAATGTA
GAGGAGCCCGTCGCCCAGGATCCAGCAGAGCCGCTAAGCGAGGGCGAGCA
GCTTGAGCAAGCCATCAAGAACCCACTCACTCTGGGCGGCGTTAGCTTCA
AAGAGCATCTCAAAAAGATCAAGCCCATTTTGGCCAAGGGCCAGCACTTC
CATGGCGCCACCAACGAAAGACAGTCGGCTGTGGTAGCCGCCTTTAAGCA
CTCCTGGGCTGGCTACAAGAAGTATGCCTGGGGCCACGACAACCTGAAGC
CCATCTCCCAGTACTCCCACGAGTGGTTCGGTCTGGGACTAACCATTGTT
GACTCATTGGATACCATGTACATAATGGGACTGGATGATGAATTCAAGGA
AGGACGCGACTGGGTAGAGCAATCACTGCGCTTTGATACCAAGCGCGATG
TAAACCTATTCGAGGTCACCATACGTGTCCTAGGCGGACTGCTGTCTGCA
TATCACCTGAGCGGCGATACAATGTTTCTGGCCAAGGCTGCGGAGCTGGG
CAACCGTTTACTTCCCGCCTTTCAATCGCCGTCAAATATCCCCTATTCTG
ATGTGAATCTCGGAGATCTTTCGGCGCACTCGCCGAAGTGGTCTCCTGAT
AGCTCCACCAGTGAGGTCACCACCATTCAGCTAGAGTTTCGTGATTTGAG
TCGCTCTACAAACATCTCCATTTATGAACAGGTTGCTCACAAAGTAAACG
AGAAGGTGCATGATCTGGAGAAGAACCATGGTTTGGTGCCCATATTCATT
AACGCCAACACAGGAACATTCCGAAACTACGCCACTATCTCGCTTGGTGC
TCGTGGGGACTCCTACTATGAGTACTTGCTCAAACAGTGGATTCAGACCG
GCCGCAAGGATAATGATAACCTTATTTTGGACTACATGCAAGCAGTCGAT
GGTGTTCTAACACAACTGATGCGGCGTACGCCACGCGAGCACTGGGTTTA
CATTGGCGAGCTGATCAATGGCAAAGACTTTAAGCCGAAAATGGATCACC
TTACGTGTTATCTGCCGGGCACTTTGATTCTGGGTCACCAGAACGGAATG
CCAGACTCGCACCTTATACTTGCGAGGGATTTATTGGATACATGCTATCA
GACCTATATGATGAATCCCACACATTTGGCTGCTGAGATCTCGTATTTCG
CGCTAACCGAAAAGGACGATCAGGACATTTATGTGAAGCCAAACGATGCC
CACAACCTGTTGCGCCCGGAGTTTGTGGAGAGTCTCTATTACTTCTACTC
AATAACTGGCAATCGGACATACCAGGACATGGGATGGAAAATTTTCCAGG
CGTTTGAGACTCACGCTAAAGTAAATGCAGGCTACACATCGATGGGAAAT
GTAAAGAACACACAGAGCACGCGTCTGCGCGATCTGATGGAAAGCTTTTG
GATGAGCGAGACCCTGAAGTACTTCTACCTGCTGTTTAGCGACGACCGCA
AGGAAATCGACCTGGAGCAATGGGTCTTCAATTCGGAGGGCCATCCACTG
CCGGTCTATCCGCTCAAGACTTAAAAGCTTTCTAGACCAT

BS09255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-Ib-RA 2058 CG11874-PA 1..2058 17..2074 10140 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-Ib-RA 3211 CG11874-RA 326..2383 17..2074 10140 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29109881..29110535 2074..1420 3215 99.4 Minus
3R 32079331 3R 29111359..29111874 890..375 2520 99.2 Minus
3R 32079331 3R 29110933..29111276 1233..890 1690 99.4 Minus
3R 32079331 3R 29112041..29112314 376..103 1370 100 Minus
3R 32079331 3R 29110689..29110879 1419..1229 955 100 Minus
3R 32079331 3R 29112410..29112497 104..17 440 100 Minus
Blast to na_te.dros performed 2014-11-28 00:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 749..870 1913..1789 114 56 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8631..8752 1913..1789 114 56 Minus

BS09255.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:45 Download gff for BS09255.complete
Subject Subject Range Query Range Percent Splice Strand
CG11874-RA 308..2367 17..2079 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:41 Download gff for BS09255.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-Ib-RA 326..2381 17..2072 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:08 Download gff for BS09255.complete
Subject Subject Range Query Range Percent Splice Strand
CG11874-RA 308..2363 17..2072 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:45 Download gff for BS09255.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Man-Ib-RA 326..2381 17..2072 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:45 Download gff for BS09255.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29109883..29110535 1420..2072 99 <- Minus
3R 29110689..29110876 1232..1419 100 <- Minus
3R 29110935..29111275 891..1231 99 <- Minus
3R 29111359..29111872 377..890 99 <- Minus
3R 29112041..29112313 104..376 100 <- Minus
3R 29112411..29112497 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:41 Download gff for BS09255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24935605..24936257 1420..2072 99 <- Minus
arm_3R 24936411..24936598 1232..1419 100 <- Minus
arm_3R 24936657..24936997 891..1231 99 <- Minus
arm_3R 24937081..24937594 377..890 99 <- Minus
arm_3R 24937763..24938035 104..376 100 <- Minus
arm_3R 24938133..24938219 17..103 100   Minus

BS09255.pep Sequence

Translation from 16 to 2073

> BS09255.pep
MKDGGHITLTLPPGSAATTDERGRKSLRRAWNQLPRCQRNLIILGITGFC
VTVLLCLSGDQLLAASLKDVDTKAEVAAYQMPLPNPHHHPGVDKDVPKDT
AAVPVPADKRAPRVEAVSDKFNELVAYGEANSAENVARLPETVAAEGLPQ
ASAMAVALPPPDSNKEQDIGGIDILNNVEEPVAQDPAEPLSEGEQLEQAI
KNPLTLGGVSFKEHLKKIKPILAKGQHFHGATNERQSAVVAAFKHSWAGY
KKYAWGHDNLKPISQYSHEWFGLGLTIVDSLDTMYIMGLDDEFKEGRDWV
EQSLRFDTKRDVNLFEVTIRVLGGLLSAYHLSGDTMFLAKAAELGNRLLP
AFQSPSNIPYSDVNLGDLSAHSPKWSPDSSTSEVTTIQLEFRDLSRSTNI
SIYEQVAHKVNEKVHDLEKNHGLVPIFINANTGTFRNYATISLGARGDSY
YEYLLKQWIQTGRKDNDNLILDYMQAVDGVLTQLMRRTPREHWVYIGELI
NGKDFKPKMDHLTCYLPGTLILGHQNGMPDSHLILARDLLDTCYQTYMMN
PTHLAAEISYFALTEKDDQDIYVKPNDAHNLLRPEFVESLYYFYSITGNR
TYQDMGWKIFQAFETHAKVNAGYTSMGNVKNTQSTRLRDLMESFWMSETL
KYFYLLFSDDRKEIDLEQWVFNSEGHPLPVYPLKT*

BS09255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Man-Ib-PA 685 CG11874-PA 1..685 1..685 3622 100 Plus
alpha-Man-I-PP 643 CG42275-PP 175..623 234..680 802 37.6 Plus
alpha-Man-I-PK 643 CG42275-PK 175..623 234..680 802 37.6 Plus
alpha-Man-I-PO 667 CG42275-PO 123..647 150..680 800 34.7 Plus
alpha-Man-I-PN 667 CG42275-PN 123..647 150..680 800 34.7 Plus