Clone BS09256 Report

Search the DGRC for BS09256

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG12016-RA
Protein status:BS09256.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09256.3prime Sequence

895 bp (847 high quality bases) assembled on 2006-01-29

> BS09256.3prime
ATGGTCTAGAAAGCTTCTATTGCTCCATGGGACACGCCGACGGCATGACG
TTGTTATTGCTCGGACCCATGTAGAGCATCCCGAACCGTTTCTGCTGCGG
CGGGCAGACGACGGGAGCAGGAGCTGGAACCTCGCAGCGCTCCTTGAAGT
AGTGGACGATGCGATGAAGGACGAACGCGAGGATCTTCTCTTTGGCGATC
TCGCCATTGAGGAATGTAATGTCCTTGCAGTCGCGGTACTCGCTGAAGTT
CTTTTCATAGTGCGGCCACACACAGAGCTCGAAGTAGCCCGTGACATCGG
GTGGATCGTATGTGCGCTTACTGCGCCGTTCGAAGCACTTCTCATATGGC
AGATGGAAGTGGTACTTAATGTTGCACAGGGCCAGCAGCTCCGGCTGGTT
GAAGATCATGAATCCCTCGACCAGGAGGAAATTGACCTTCTTGTCCCTCA
GCTGGGCGGCAATCTGCGCATTGATGCTCATAATGTGCTGCTGCTGCTGC
TGGATTTGATGGTGCTGGTGGTGGTGCTGCTGGTGATGGGGGTGATGTCT
CGGGTGCTGCTGTGGCGGATATTGATAGACCCCGCCATTGGCCTGTTTGT
AGTAGTTCGCATTGTACTGGTACTGCTGCTGGAACTGCTGGGCGTAGTGC
TCGAAGTTGGCATACGTCACAAGGTGCTCCTGTGGCTCGGGAGCCACATG
GCGCCCCTTGATTATGTGCGCTATGTCGTTCAGCATCTTGGCCATGTCCA
GCGAGGTGATGAGCTCGAAGTTGATGGCGTTGAGCGCCTCATTTCGCTGA
TGTCGCTTGTCCTCCACGGGCAGAAAGTAGTCATCCTGCGAGATCAGACG
CACCTCGCCAATGGTGTACGGCGAGTTCCACAGCGGCGCTCCTCT

BS09256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12016-PA 972 CG12016-RA 94..972 895..17 4345 99.7 Minus
CG12016-PB 972 CG12016-RB 94..972 895..17 4345 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42456-RA 2326 CG42456-RA 675..1553 895..17 4365 99.8 Minus
CG12016-RB 1995 CG12016-RB 344..1222 895..17 4365 99.8 Minus
CG12016-RA 2326 CG12016-RA 675..1553 895..17 4365 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3320838..3321716 895..17 4365 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 17:09:47 has no hits.

BS09256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:00 Download gff for BS09256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12016-PA 94..972 17..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:01 Download gff for BS09256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12016-PB 94..972 17..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:47:02 Download gff for BS09256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42456-RA 675..1556 10..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:48 Download gff for BS09256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12016-RA 675..1556 10..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:48 Download gff for BS09256.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3320838..3321719 10..895 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:47:02 Download gff for BS09256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3320838..3321719 10..895 99   Minus

BS09256.5prime Sequence

915 bp (812 high quality bases) assembled on 2006-01-28

> BS09256.5prime
GAAGTTATCAGTCGACATGCCGCAGTGGCTGGTCATTGGTATCTCGGGTG
TCACCTGTGGTGGCAAAACGACGCTAGCCCACAGCCTGCACGACTACTTC
AAGGGTCTGAGAGGAGCGCCGCTGTGGAACTCGCCGTACACCATTGGCGA
GGTGCGTCTGATCTCGCAGGATGACTACTTTCTGCCCGTGGAGGACAAGC
GACATCAGCGAAATGAGGCGCTCAACGCCATCAACTTCGAGCTCATCACC
TCGCTGGACATGGCCAAGATGCTGAACGACATAGCGCACATAATCAAGGG
GCGCCATGTGGCTCCCGAGCCACAGGAGCACCTTGTGACGTATGCCAACT
TCGAGCACTACGCCCAGCAGTTCCAGCAGCAGTACCAGTACAATGCGAAC
TACTACAAACAGGCCAATGGCGGGGTCTATCAATATCCGCCACAGCAGCA
CCCGAGACATCACCCCCATCACCAGCAGCACCACCACCAGCACCATCAAA
TCCAGCAGCAGCAGCAGCACATTATGAGCATCAATGCGCAGATTGCCGCC
CAGCTGAGGGACAAGAAGGTCAATTTCCTCCTGGTCGAGGGATTCATGAT
CTTCAACCAGCCGGAGCTGCTGGCCCTGTGCAACATTAAGTACCACTTCC
ATCTGCCATATGAGAAGTGCTTCGAACGGCGCAGTAAGCGCACATACGAT
CCACCCGATGTCACGGGCTACTTCGAGCTCTGTGTGTGGCCGCACTATGA
AAAGAACTTCAGCGAGTACCGCGACTGCAAGGACATTACATTCCTCAATG
GCGAGATCGCCAAAGAGAAGATCCTCGCGTTCGTCCTTCATCGCATCGTC
CACTACTTTCAGGAGCGCTGCGAGGTTCCAGCTCCTGCTCCCGTCGTCTG
CCCGCCGCAGCAGAA

BS09256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12016-PA 972 CG12016-RA 1..899 17..915 4370 99.4 Plus
CG12016-PB 972 CG12016-RB 1..899 17..915 4370 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG42456-RA 2326 CG42456-RA 582..1480 17..915 4420 99.4 Plus
CG12016-RB 1995 CG12016-RB 251..1149 17..915 4420 99.4 Plus
CG12016-RA 2326 CG12016-RA 582..1480 17..915 4420 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3320745..3321643 17..915 4420 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 02:36:51 has no hits.

BS09256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:02 Download gff for BS09256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12016-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:02 Download gff for BS09256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12016-PB 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:47 Download gff for BS09256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42456-RA 582..1480 17..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:27 Download gff for BS09256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12016-RA 582..1480 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:27 Download gff for BS09256.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3320745..3321643 17..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:47 Download gff for BS09256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3320745..3321643 17..915 99   Plus

BS09256.complete Sequence

1004 bp (1004 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636383

> BS09256.complete
GAAGTTATCAGTCGACATGCCGCAGTGGCTGGTCATTGGTATCTCGGGTG
TCACCTGTGGTGGCAAAACGACGCTAGCCCACAGCCTGCACGACTACTTC
AAGGGTCTGAGAGGAGCGCCGCTGTGGAACTCGCCGTACACCATTGGCGA
GGTGCGTCTGATCTCGCAGGATGACTACTTTCTGCCCGTGGAGGACAAGC
GACATCAGCGAAATGAGGCGCTCAACGCCATCAACTTCGAGCTCATCACC
TCGCTGGACATGGCCAAGATGCTGAACGACATAGCGCACATAATCAAGGG
GCGCCATGTGGCTCCCGAGCCACAGGAGCACCTTGTGACGTATGCCAACT
TCGAGCACTACGCCCAGCAGTTCCAGCAGCAGTACCAGTACAATGCGAAC
TACTACAAACAGGCCAATGGCGGGGTCTATCAATATCCGCCACAGCAGCA
CCCGAGACATCACCCCCATCACCAGCAGCACCACCACCAGCACCATCAAA
TCCAGCAGCAGCAGCAGCACATTATGAGCATCAATGCGCAGATTGCCGCC
CAGCTGAGGGACAAGAAGGTCAATTTCCTCCTGGTCGAGGGATTCATGAT
CTTCAACCAGCCGGAGCTGCTGGCCCTGTGCAACATTAAGTACCACTTCC
ATCTGCCATATGAGAAGTGCTTCGAACGGCGCAGTAAGCGCACATACGAT
CCACCCGATGTCACGGGCTACTTCGAGCTCTGTGTGTGGCCGCACTATGA
AAAGAACTTCAGCGAGTACCGCGACTGCAAGGACATTACATTCCTCAATG
GCGAGATCGCCAAAGAGAAGATCCTCGCGTTCGTCCTTCATCGCATCGTC
CACTACTTCAAGGAGCGCTGCGAGGTTCCAGCTCCTGCTCCCGTCGTCTG
CCCGCCGCAGCAGAAACGGTTCGGGATGCTCTACATGGGTCCGAGCAATA
ACAACGTCATGCCGTCGGCGTGTCCCATGGAGCAATAGAAGCTTTCTAGA
CCAT

BS09256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12016-RB 972 CG12016-PB 1..972 17..988 4800 99.6 Plus
CG12016-RA 972 CG12016-PA 1..972 17..988 4800 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42456-RA 2326 CG42456-RA 582..1553 17..988 4800 99.6 Plus
CG12016-RB 1995 CG12016-RB 251..1222 17..988 4800 99.6 Plus
CG12016-RA 2326 CG12016-RA 582..1553 17..988 4800 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3320745..3321716 17..988 4800 99.6 Plus
Blast to na_te.dros performed on 2014-11-27 19:47:36 has no hits.

BS09256.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:59 Download gff for BS09256.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RB 1..972 17..988 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:44 Download gff for BS09256.complete
Subject Subject Range Query Range Percent Splice Strand
CG42456-RA 568..1542 17..995 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:22 Download gff for BS09256.complete
Subject Subject Range Query Range Percent Splice Strand
CG42456-RA 582..1553 17..988 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:00 Download gff for BS09256.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RB 251..1225 17..995 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:27 Download gff for BS09256.complete
Subject Subject Range Query Range Percent Splice Strand
CG12016-RA 582..1553 17..988 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:27 Download gff for BS09256.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3320745..3321716 17..988 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:22 Download gff for BS09256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3320745..3321716 17..988 99   Plus

BS09256.pep Sequence

Translation from 16 to 987

> BS09256.pep
MPQWLVIGISGVTCGGKTTLAHSLHDYFKGLRGAPLWNSPYTIGEVRLIS
QDDYFLPVEDKRHQRNEALNAINFELITSLDMAKMLNDIAHIIKGRHVAP
EPQEHLVTYANFEHYAQQFQQQYQYNANYYKQANGGVYQYPPQQHPRHHP
HHQQHHHQHHQIQQQQQHIMSINAQIAAQLRDKKVNFLLVEGFMIFNQPE
LLALCNIKYHFHLPYEKCFERRSKRTYDPPDVTGYFELCVWPHYEKNFSE
YRDCKDITFLNGEIAKEKILAFVLHRIVHYFKERCEVPAPAPVVCPPQQK
RFGMLYMGPSNNNVMPSACPMEQ*

BS09256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12016-PB 323 CG12016-PB 1..323 1..323 1788 100 Plus
CG12016-PA 323 CG12016-PA 1..323 1..323 1788 100 Plus