Clone Sequence Records
BS09256.3prime Sequence
895 bp (847 high quality bases) assembled on 2006-01-29
> BS09256.3prime
ATGGTCTAGAAAGCTTCTATTGCTCCATGGGACACGCCGACGGCATGACG
TTGTTATTGCTCGGACCCATGTAGAGCATCCCGAACCGTTTCTGCTGCGG
CGGGCAGACGACGGGAGCAGGAGCTGGAACCTCGCAGCGCTCCTTGAAGT
AGTGGACGATGCGATGAAGGACGAACGCGAGGATCTTCTCTTTGGCGATC
TCGCCATTGAGGAATGTAATGTCCTTGCAGTCGCGGTACTCGCTGAAGTT
CTTTTCATAGTGCGGCCACACACAGAGCTCGAAGTAGCCCGTGACATCGG
GTGGATCGTATGTGCGCTTACTGCGCCGTTCGAAGCACTTCTCATATGGC
AGATGGAAGTGGTACTTAATGTTGCACAGGGCCAGCAGCTCCGGCTGGTT
GAAGATCATGAATCCCTCGACCAGGAGGAAATTGACCTTCTTGTCCCTCA
GCTGGGCGGCAATCTGCGCATTGATGCTCATAATGTGCTGCTGCTGCTGC
TGGATTTGATGGTGCTGGTGGTGGTGCTGCTGGTGATGGGGGTGATGTCT
CGGGTGCTGCTGTGGCGGATATTGATAGACCCCGCCATTGGCCTGTTTGT
AGTAGTTCGCATTGTACTGGTACTGCTGCTGGAACTGCTGGGCGTAGTGC
TCGAAGTTGGCATACGTCACAAGGTGCTCCTGTGGCTCGGGAGCCACATG
GCGCCCCTTGATTATGTGCGCTATGTCGTTCAGCATCTTGGCCATGTCCA
GCGAGGTGATGAGCTCGAAGTTGATGGCGTTGAGCGCCTCATTTCGCTGA
TGTCGCTTGTCCTCCACGGGCAGAAAGTAGTCATCCTGCGAGATCAGACG
CACCTCGCCAATGGTGTACGGCGAGTTCCACAGCGGCGCTCCTCT
BS09256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12016-PA | 972 | CG12016-RA | 94..972 | 895..17 | 4345 | 99.7 | Minus |
CG12016-PB | 972 | CG12016-RB | 94..972 | 895..17 | 4345 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42456-RA | 2326 | CG42456-RA | 675..1553 | 895..17 | 4365 | 99.8 | Minus |
CG12016-RB | 1995 | CG12016-RB | 344..1222 | 895..17 | 4365 | 99.8 | Minus |
CG12016-RA | 2326 | CG12016-RA | 675..1553 | 895..17 | 4365 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3320838..3321716 | 895..17 | 4365 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:09:47 has no hits.
BS09256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:00 Download gff for
BS09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-PA | 94..972 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:01 Download gff for
BS09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-PB | 94..972 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:47:02 Download gff for
BS09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42456-RA | 675..1556 | 10..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:48 Download gff for
BS09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-RA | 675..1556 | 10..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:48 Download gff for
BS09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3320838..3321719 | 10..895 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:47:02 Download gff for
BS09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3320838..3321719 | 10..895 | 99 | | Minus |
BS09256.5prime Sequence
915 bp (812 high quality bases) assembled on 2006-01-28
> BS09256.5prime
GAAGTTATCAGTCGACATGCCGCAGTGGCTGGTCATTGGTATCTCGGGTG
TCACCTGTGGTGGCAAAACGACGCTAGCCCACAGCCTGCACGACTACTTC
AAGGGTCTGAGAGGAGCGCCGCTGTGGAACTCGCCGTACACCATTGGCGA
GGTGCGTCTGATCTCGCAGGATGACTACTTTCTGCCCGTGGAGGACAAGC
GACATCAGCGAAATGAGGCGCTCAACGCCATCAACTTCGAGCTCATCACC
TCGCTGGACATGGCCAAGATGCTGAACGACATAGCGCACATAATCAAGGG
GCGCCATGTGGCTCCCGAGCCACAGGAGCACCTTGTGACGTATGCCAACT
TCGAGCACTACGCCCAGCAGTTCCAGCAGCAGTACCAGTACAATGCGAAC
TACTACAAACAGGCCAATGGCGGGGTCTATCAATATCCGCCACAGCAGCA
CCCGAGACATCACCCCCATCACCAGCAGCACCACCACCAGCACCATCAAA
TCCAGCAGCAGCAGCAGCACATTATGAGCATCAATGCGCAGATTGCCGCC
CAGCTGAGGGACAAGAAGGTCAATTTCCTCCTGGTCGAGGGATTCATGAT
CTTCAACCAGCCGGAGCTGCTGGCCCTGTGCAACATTAAGTACCACTTCC
ATCTGCCATATGAGAAGTGCTTCGAACGGCGCAGTAAGCGCACATACGAT
CCACCCGATGTCACGGGCTACTTCGAGCTCTGTGTGTGGCCGCACTATGA
AAAGAACTTCAGCGAGTACCGCGACTGCAAGGACATTACATTCCTCAATG
GCGAGATCGCCAAAGAGAAGATCCTCGCGTTCGTCCTTCATCGCATCGTC
CACTACTTTCAGGAGCGCTGCGAGGTTCCAGCTCCTGCTCCCGTCGTCTG
CCCGCCGCAGCAGAA
BS09256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12016-PA | 972 | CG12016-RA | 1..899 | 17..915 | 4370 | 99.4 | Plus |
CG12016-PB | 972 | CG12016-RB | 1..899 | 17..915 | 4370 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42456-RA | 2326 | CG42456-RA | 582..1480 | 17..915 | 4420 | 99.4 | Plus |
CG12016-RB | 1995 | CG12016-RB | 251..1149 | 17..915 | 4420 | 99.4 | Plus |
CG12016-RA | 2326 | CG12016-RA | 582..1480 | 17..915 | 4420 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3320745..3321643 | 17..915 | 4420 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:36:51 has no hits.
BS09256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:02 Download gff for
BS09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:02 Download gff for
BS09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-PB | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:47 Download gff for
BS09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42456-RA | 582..1480 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:27 Download gff for
BS09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-RA | 582..1480 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:27 Download gff for
BS09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3320745..3321643 | 17..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:47 Download gff for
BS09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3320745..3321643 | 17..915 | 99 | | Plus |
BS09256.complete Sequence
1004 bp (1004 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636383
> BS09256.complete
GAAGTTATCAGTCGACATGCCGCAGTGGCTGGTCATTGGTATCTCGGGTG
TCACCTGTGGTGGCAAAACGACGCTAGCCCACAGCCTGCACGACTACTTC
AAGGGTCTGAGAGGAGCGCCGCTGTGGAACTCGCCGTACACCATTGGCGA
GGTGCGTCTGATCTCGCAGGATGACTACTTTCTGCCCGTGGAGGACAAGC
GACATCAGCGAAATGAGGCGCTCAACGCCATCAACTTCGAGCTCATCACC
TCGCTGGACATGGCCAAGATGCTGAACGACATAGCGCACATAATCAAGGG
GCGCCATGTGGCTCCCGAGCCACAGGAGCACCTTGTGACGTATGCCAACT
TCGAGCACTACGCCCAGCAGTTCCAGCAGCAGTACCAGTACAATGCGAAC
TACTACAAACAGGCCAATGGCGGGGTCTATCAATATCCGCCACAGCAGCA
CCCGAGACATCACCCCCATCACCAGCAGCACCACCACCAGCACCATCAAA
TCCAGCAGCAGCAGCAGCACATTATGAGCATCAATGCGCAGATTGCCGCC
CAGCTGAGGGACAAGAAGGTCAATTTCCTCCTGGTCGAGGGATTCATGAT
CTTCAACCAGCCGGAGCTGCTGGCCCTGTGCAACATTAAGTACCACTTCC
ATCTGCCATATGAGAAGTGCTTCGAACGGCGCAGTAAGCGCACATACGAT
CCACCCGATGTCACGGGCTACTTCGAGCTCTGTGTGTGGCCGCACTATGA
AAAGAACTTCAGCGAGTACCGCGACTGCAAGGACATTACATTCCTCAATG
GCGAGATCGCCAAAGAGAAGATCCTCGCGTTCGTCCTTCATCGCATCGTC
CACTACTTCAAGGAGCGCTGCGAGGTTCCAGCTCCTGCTCCCGTCGTCTG
CCCGCCGCAGCAGAAACGGTTCGGGATGCTCTACATGGGTCCGAGCAATA
ACAACGTCATGCCGTCGGCGTGTCCCATGGAGCAATAGAAGCTTTCTAGA
CCAT
BS09256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12016-RB | 972 | CG12016-PB | 1..972 | 17..988 | 4800 | 99.6 | Plus |
CG12016-RA | 972 | CG12016-PA | 1..972 | 17..988 | 4800 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42456-RA | 2326 | CG42456-RA | 582..1553 | 17..988 | 4800 | 99.6 | Plus |
CG12016-RB | 1995 | CG12016-RB | 251..1222 | 17..988 | 4800 | 99.6 | Plus |
CG12016-RA | 2326 | CG12016-RA | 582..1553 | 17..988 | 4800 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3320745..3321716 | 17..988 | 4800 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:47:36 has no hits.
BS09256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:59 Download gff for
BS09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-RB | 1..972 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:44 Download gff for
BS09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42456-RA | 568..1542 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:22 Download gff for
BS09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42456-RA | 582..1553 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:00 Download gff for
BS09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-RB | 251..1225 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:27 Download gff for
BS09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12016-RA | 582..1553 | 17..988 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:27 Download gff for
BS09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3320745..3321716 | 17..988 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:22 Download gff for
BS09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3320745..3321716 | 17..988 | 99 | | Plus |
BS09256.pep Sequence
Translation from 16 to 987
> BS09256.pep
MPQWLVIGISGVTCGGKTTLAHSLHDYFKGLRGAPLWNSPYTIGEVRLIS
QDDYFLPVEDKRHQRNEALNAINFELITSLDMAKMLNDIAHIIKGRHVAP
EPQEHLVTYANFEHYAQQFQQQYQYNANYYKQANGGVYQYPPQQHPRHHP
HHQQHHHQHHQIQQQQQHIMSINAQIAAQLRDKKVNFLLVEGFMIFNQPE
LLALCNIKYHFHLPYEKCFERRSKRTYDPPDVTGYFELCVWPHYEKNFSE
YRDCKDITFLNGEIAKEKILAFVLHRIVHYFKERCEVPAPAPVVCPPQQK
RFGMLYMGPSNNNVMPSACPMEQ*
BS09256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12016-PB | 323 | CG12016-PB | 1..323 | 1..323 | 1788 | 100 | Plus |
CG12016-PA | 323 | CG12016-PA | 1..323 | 1..323 | 1788 | 100 | Plus |