Clone Sequence Records
BS09261.3prime Sequence
933 bp (852 high quality bases) assembled on 2006-01-29
> BS09261.3prime
ATGGTCTAGAAAGCTTCTAGCACAGAGTGGGGAATTGAGCTTCATCGTCA
ACCTTCAGTGGCTTCTGGGCGGAGCGGCGTTTCTCTCCGAATCTGTTGTT
GTCTTGTCTGTTTTCATAGCCGTTGCTGGGTCCGTTGTTAAAGCGGGGAC
CACGGAATCCCTCTCCACGCGGTCCGTCATTGCGGTAGCCTTCTCCACGC
GGTCCCTCATTGCGTGGACCCTCTCCGCGAGGTCCGTCGTTGCGATAACC
ACCTTCTCCGCGAGGTCCGTCATTGCGATAGCCACCTTCTCCGCGAGGTC
CGTCATTGCGGAAGCCACCCTCGCGAGGACCGGCTCCGGGGCGAGGTCCC
TTGCGGAATCCGACCTTGCGTCCATCATTGAAGTTGAACTGGATGTCCAC
GATGCGCTGAAGGCGGCCCACGCGCTGAGGATACAGCGATGGATCATACT
CCAACTCGTCTTCGCTGTTGCTCTCCTTCTTCTTGCTCAGCACGATCATC
TTCTTCCACTCGGCATTGTCGGCGGCTCCCTCGCCCGCTTTGCGCAAATT
GTAGTTGGGCTTGGCACGCTGGTCTCTCAAAGCCTTCCACTCGTCAAGGG
TCATCTGCTTGGACTCATCCTCTTCGGCGGCGACCGCGGGATCAGCCGAC
TGTTCGTTGGCCGAGTCCTCCTTTTCCGCCTGCGGTGAGGTCTCCCCGGT
CGTCTTTAAGTCCTCAATGTCCTGCTTCGGGGAGCCCCAGTTGTGGGCAC
CACCGCCTTCGCGCTTGTCAATTGACTTGACGCCAGTTCTATCGGATCCC
GACTGGCGATCGAACTCGCGCTTTCCGAACTTCTCGCCGGTACGGACGCG
TGGTGGTCCCTGTTGTCACGATTGTTGAATTGACGCTGCGGCAACTCGTT
TCCGAATTCTCCGTTCGACTCTTTATTTCCGTA
BS09261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11844-PB | 1332 | CG11844-RB | 489..1332 | 860..17 | 4220 | 100 | Minus |
CG11844-PC | 1239 | CG11844-RC | 396..1239 | 860..17 | 4220 | 100 | Minus |
CG11844-PA | 1239 | CG11844-RA | 396..1239 | 860..17 | 4220 | 100 | Minus |
CG11844-PB | 1332 | CG11844-RB | 415..490 | 933..858 | 355 | 98.6 | Minus |
CG11844-PC | 1239 | CG11844-RC | 322..397 | 933..858 | 355 | 98.6 | Minus |
CG11844-PA | 1239 | CG11844-RA | 322..397 | 933..858 | 355 | 98.6 | Minus |
CG4170-PD | 1473 | vig-RD | 652..716 | 823..759 | 200 | 92.3 | Minus |
CG4170-PC | 1473 | vig-RC | 652..716 | 823..759 | 200 | 92.3 | Minus |
CG4170-PA | 1473 | vig-RA | 652..716 | 823..759 | 200 | 92.3 | Minus |
CG4170-PB | 1473 | vig-RB | 652..716 | 823..759 | 200 | 92.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig2-RD | 1553 | CG11844-RD | 373..1290 | 933..17 | 4550 | 99.8 | Minus |
vig2-RA | 1549 | CG11844-RA | 369..1286 | 933..17 | 4550 | 99.8 | Minus |
vig2-RC | 1701 | CG11844-RC | 521..1438 | 933..17 | 4550 | 99.8 | Minus |
vig2-RD | 1553 | CG11844-RD | 988..1115 | 286..162 | 320 | 85.3 | Minus |
vig2-RD | 1553 | CG11844-RD | 1021..1145 | 319..192 | 320 | 85.3 | Minus |
vig2-RA | 1549 | CG11844-RA | 984..1111 | 286..162 | 320 | 85.3 | Minus |
vig2-RA | 1549 | CG11844-RA | 1017..1141 | 319..192 | 320 | 85.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25124589..25125356 | 784..17 | 3840 | 100 | Minus |
Y | 3667352 | Y | 3023506..3024026 | 784..264 | 2425 | 97.7 | Minus |
3R | 32079331 | 3R | 25123965..25124116 | 933..783 | 695 | 98.7 | Minus |
Y | 3667352 | Y | 3022885..3023036 | 933..783 | 635 | 96.1 | Minus |
3R | 32079331 | 3R | 25125054..25125181 | 286..162 | 290 | 83.6 | Minus |
3R | 32079331 | 3R | 25125087..25125211 | 319..192 | 290 | 83.6 | Minus |
2L | 23513712 | 2L | 15064789..15064902 | 372..485 | 240 | 80.7 | Plus |
Y | 3667352 | Y | 3023971..3024026 | 286..231 | 205 | 91.1 | Minus |
Blast to na_te.dros performed 2015-01-31 14:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 1496..1540 | 544..501 | 123 | 77.8 | Minus |
BS09261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:10 Download gff for
BS09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11844-PA | 323..1239 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:12 Download gff for
BS09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11844-PA | 323..1239 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:03:31 Download gff for
BS09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig2-RC | 522..1447 | 5..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:03 Download gff for
BS09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig2-RC | 522..1447 | 5..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:03 Download gff for
BS09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25123966..25124115 | 784..932 | 98 | -> | Minus |
3R | 25124590..25125365 | 5..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:03:31 Download gff for
BS09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20949688..20949837 | 784..932 | 98 | -> | Minus |
arm_3R | 20950312..20951087 | 5..783 | 99 | | Minus |
BS09261.5prime Sequence
790 bp (787 high quality bases) assembled on 2006-01-28
> BS09261.5prime
GAAGTTATCAGTCGACATGGACAATTCTGGAAATAACCGCTACGAGCTGT
TGTTCATGGACGACGATGACTCCTCTGGGCTCGCACAGCCACAGATTGCC
GCTGTAGTCGCGGCGCCCAAGAAGCCGGAACCGGCAAAGGCGCCAAAGGC
ACCAAAGAGCAAGTCGGAGAAGGAGAACAAGCCGGTTGTGGCTGCCCGCA
AGGCCAACGCTCCGGTGGCTAAAAACGCTAGTCCAGTGAAAGGCGGCAAG
GGTCCCGCTGGCGGGGATGTGGGTCGTCCCAAGAACCCAACAGCAAACGG
TGCCAACAACCAGGGCAGGTTCAACAACAACCAACGCTACGGAAATAAGG
AGTCGAACGGAGAATTCGGAAACGAGTTGCCGCAGCGTCAATTCAACAAT
CGTGACAACAGGGGACCACCACGCGTCCGTACCGGCGAGAAGTTCGGAAA
GCGCGAGTTCGATCGCCAGTCGGGATCCGATAGAACTGGCGTCAAGTCAA
TTGACAAGCGCGAAGGCGGTGGTGCCCACAACTGGGGCTCCCCGAAGCAG
GACATTGAGGACTTAAAGACGACCGGGGAGACCTCACCGCAGGCGGAAAA
GGAGGACTCGGCCAACGAACAGTCGGCTGATCCCGCGGTCGCCGCCGAAG
AGGATGAGTCCAAGCAGATGACCCTTGACGAGTGGAAGGCTTTGAGAGAC
CAGCGTGCCAAGCCCAACTACAATTTGCGCAAAGCGGGCGAGGGAGCCGC
CGACAATGCCGAGTGGAAGAAGATGATCGTGCTGAGCAAG
BS09261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11844-PB | 1332 | CG11844-RB | 93..867 | 16..790 | 3875 | 100 | Plus |
CG11844-PC | 1239 | CG11844-RC | 1..774 | 17..790 | 3870 | 100 | Plus |
CG11844-PA | 1239 | CG11844-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG4170-PD | 1473 | vig-RD | 652..716 | 449..513 | 200 | 92.3 | Plus |
CG4170-PC | 1473 | vig-RC | 652..716 | 449..513 | 200 | 92.3 | Plus |
CG4170-PA | 1473 | vig-RA | 652..716 | 449..513 | 200 | 92.3 | Plus |
CG4170-PB | 1473 | vig-RB | 652..716 | 449..513 | 200 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig2-RD | 1553 | CG11844-RD | 51..825 | 16..790 | 3875 | 100 | Plus |
vig2-RA | 1549 | CG11844-RA | 47..821 | 16..790 | 3875 | 100 | Plus |
vig2-RC | 1701 | CG11844-RC | 199..973 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25123643..25124116 | 16..489 | 2370 | 100 | Plus |
Y | 3667352 | Y | 3022563..3023036 | 16..489 | 2190 | 97.5 | Plus |
3R | 32079331 | 3R | 25124589..25124891 | 488..790 | 1515 | 100 | Plus |
Y | 3667352 | Y | 3023506..3023808 | 488..790 | 1470 | 99 | Plus |
Blast to na_te.dros performed 2015-02-10 22:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 1496..1540 | 728..771 | 123 | 77.8 | Plus |
BS09261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:11 Download gff for
BS09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11844-PB | 90..867 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:13 Download gff for
BS09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11844-PB | 90..867 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:11 Download gff for
BS09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig2-RC | 196..973 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:41 Download gff for
BS09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig2-RC | 196..973 | 9..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:41 Download gff for
BS09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25123640..25124115 | 9..488 | 99 | -> | Plus |
3R | 25124590..25124891 | 489..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:11 Download gff for
BS09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20949362..20949837 | 9..488 | 99 | -> | Plus |
arm_3R | 20950312..20950613 | 489..790 | 100 | | Plus |
BS09261.complete Sequence
1271 bp (1271 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636384
> BS09261.complete
GAAGTTATCAGTCGACATGGACAATTCTGGAAATAACCGCTACGAGCTGT
TGTTCATGGACGACGATGACTCCTCTGGGCTCGCACAGCCACAGATTGCC
GCTGTAGTCGCGGCGCCCAAGAAGCCGGAACCGGCAAAGGCGCCAAAGGC
ACCAAAGAGCAAGTCGGAGAAGGAGAACAAGCCGGTTGTGGCTGCCCGCA
AGGCCAACGCTCCGGTGGCTAAAAACGCTAGTCCAGTGAAAGGCGGCAAG
GGTCCCGCTGGCGGGGATGTGGGTCGTCCCAAGAACCCAACAGCAAACGG
TGCCAACAACCAGGGCAGGTTCAACAACAACCAACGCTACGGAAATAAGG
AGTCGAACGGAGAATTCGGAAACGAGTTGCCGCAGCGTCAATTCAACAAT
CGTGACAACAGGGGACCACCACGCGTCCGTACCGGCGAGAAGTTCGGAAA
GCGCGAGTTCGATCGCCAGTCGGGATCCGATAGAACTGGCGTCAAGTCAA
TTGACAAGCGCGAAGGCGGTGGTGCCCACAACTGGGGCTCCCCGAAGCAG
GACATTGAGGACTTAAAGACGACCGGGGAGACCTCACCGCAGGCGGAAAA
GGAGGACTCGGCCAACGAACAGTCGGCTGATCCCGCGGTCGCCGCCGAAG
AGGATGAGTCCAAGCAGATGACCCTTGACGAGTGGAAGGCTTTGAGAGAC
CAGCGTGCCAAGCCCAACTACAATTTGCGCAAAGCGGGCGAGGGAGCCGC
CGACAATGCCGAGTGGAAGAAGATGATCGTGCTGAGCAAGAAGAAGGAGA
GCAACAGCGAAGACGAGTTGGAGTATGATCCATCGCTGTATCCTCAGCGC
GTGGGCCGCCTTCAGCGCATCGTGGACATCCAGTTCAACTTCAATGATGG
ACGCAAGGTCGGATTCCGCAAGGGACCTCGCCCCGGAGCCGGTCCTCGCG
AGGGTGGCTTCCGCAATGACGGACCTCGCGGAGAAGGTGGCTATCGCAAT
GACGGACCTCGCGGAGAAGGTGGTTATCGCAACGACGGACCTCGCGGAGA
GGGTCCACGCAATGAGGGACCGCGTGGAGAAGGCTACCGCAATGACGGAC
CGCGTGGAGAGGGATTCCGTGGTCCCCGCTTTAACAACGGACCCAGCAAC
GGCTATGAAAACAGACAAGACAACAACAGATTCGGAGAGAAACGCCGCTC
CGCCCAGAAGCCACTGAAGGTTGACGATGAAGCTCAATTCCCCACTCTGT
GCTAGAAGCTTTCTAGACCAT
BS09261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig2-RB | 1332 | CG11844-PB | 93..1332 | 16..1255 | 6200 | 100 | Plus |
vig2-RD | 1239 | CG11844-PD | 1..1239 | 17..1255 | 6195 | 100 | Plus |
vig2-RA | 1239 | CG11844-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
vig2-RB | 1332 | CG11844-PB | 1030..1157 | 986..1110 | 290 | 83.6 | Plus |
vig2-RB | 1332 | CG11844-PB | 1063..1187 | 953..1080 | 290 | 83.6 | Plus |
vig2-RD | 1239 | CG11844-PD | 937..1064 | 986..1110 | 290 | 83.6 | Plus |
vig2-RD | 1239 | CG11844-PD | 970..1094 | 953..1080 | 290 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig2-RD | 1553 | CG11844-RD | 51..1290 | 16..1255 | 6200 | 100 | Plus |
vig2-RA | 1549 | CG11844-RA | 47..1286 | 16..1255 | 6200 | 100 | Plus |
vig2-RC | 1701 | CG11844-RC | 199..1438 | 16..1255 | 6200 | 100 | Plus |
vig2-RD | 1553 | CG11844-RD | 988..1115 | 986..1110 | 290 | 83.6 | Plus |
vig2-RD | 1553 | CG11844-RD | 1021..1145 | 953..1080 | 290 | 83.6 | Plus |
vig2-RA | 1549 | CG11844-RA | 984..1111 | 986..1110 | 290 | 83.6 | Plus |
vig2-RA | 1549 | CG11844-RA | 1017..1141 | 953..1080 | 290 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25124589..25125356 | 488..1255 | 3840 | 100 | Plus |
Y | 3667352 | Y | 3023506..3024026 | 488..1008 | 2425 | 97.7 | Plus |
3R | 32079331 | 3R | 25123643..25124116 | 16..489 | 2370 | 100 | Plus |
Y | 3667352 | Y | 3022563..3023036 | 16..489 | 2190 | 97.5 | Plus |
3R | 32079331 | 3R | 25125054..25125181 | 986..1110 | 290 | 83.6 | Plus |
3R | 32079331 | 3R | 25125087..25125211 | 953..1080 | 290 | 83.6 | Plus |
2L | 23513712 | 2L | 15064789..15064902 | 900..787 | 240 | 80.7 | Minus |
Y | 3667352 | Y | 3023971..3024026 | 986..1041 | 205 | 91.1 | Plus |
Blast to na_te.dros performed 2014-11-27 06:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 1496..1540 | 728..771 | 123 | 77.8 | Plus |
BS09261.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:44 Download gff for
BS09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11844-RB | 90..1332 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:13 Download gff for
BS09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11844-RA | 28..1279 | 9..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:43 Download gff for
BS09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig2-RC | 200..1438 | 17..1255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:44 Download gff for
BS09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11844-RA | 28..1279 | 9..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:47 Download gff for
BS09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vig2-RC | 200..1438 | 17..1255 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:47 Download gff for
BS09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25123644..25124115 | 17..488 | 100 | -> | Plus |
3R | 25124590..25125356 | 489..1255 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:43 Download gff for
BS09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20949366..20949837 | 17..488 | 100 | -> | Plus |
arm_3R | 20950312..20951078 | 489..1255 | 100 | | Plus |
BS09261.pep Sequence
Translation from 16 to 1254
> BS09261.pep
MDNSGNNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKS
EKENKPVVAARKANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQG
RFNNNQRYGNKESNGEFGNELPQRQFNNRDNRGPPRVRTGEKFGKREFDR
QSGSDRTGVKSIDKREGGGAHNWGSPKQDIEDLKTTGETSPQAEKEDSAN
EQSADPAVAAEEDESKQMTLDEWKALRDQRAKPNYNLRKAGEGAADNAEW
KKMIVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGF
RKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNE
GPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPL
KVDDEAQFPTLC*
BS09261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vig2-PD | 412 | CG11844-PD | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PA | 412 | CG11844-PA | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PC | 412 | CG11844-PC | 1..412 | 1..412 | 2217 | 100 | Plus |
vig2-PB | 443 | CG11844-PB | 32..443 | 1..412 | 2217 | 100 | Plus |
fdy-PB | 350 | CR41503-PB | 21..350 | 1..330 | 1674 | 96.1 | Plus |