Clone BS09261 Report

Search the DGRC for BS09261

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:61
Vector:pDNR-Dual
Associated Gene/Transcriptvig2-RA
Protein status:BS09261.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09261.3prime Sequence

933 bp (852 high quality bases) assembled on 2006-01-29

> BS09261.3prime
ATGGTCTAGAAAGCTTCTAGCACAGAGTGGGGAATTGAGCTTCATCGTCA
ACCTTCAGTGGCTTCTGGGCGGAGCGGCGTTTCTCTCCGAATCTGTTGTT
GTCTTGTCTGTTTTCATAGCCGTTGCTGGGTCCGTTGTTAAAGCGGGGAC
CACGGAATCCCTCTCCACGCGGTCCGTCATTGCGGTAGCCTTCTCCACGC
GGTCCCTCATTGCGTGGACCCTCTCCGCGAGGTCCGTCGTTGCGATAACC
ACCTTCTCCGCGAGGTCCGTCATTGCGATAGCCACCTTCTCCGCGAGGTC
CGTCATTGCGGAAGCCACCCTCGCGAGGACCGGCTCCGGGGCGAGGTCCC
TTGCGGAATCCGACCTTGCGTCCATCATTGAAGTTGAACTGGATGTCCAC
GATGCGCTGAAGGCGGCCCACGCGCTGAGGATACAGCGATGGATCATACT
CCAACTCGTCTTCGCTGTTGCTCTCCTTCTTCTTGCTCAGCACGATCATC
TTCTTCCACTCGGCATTGTCGGCGGCTCCCTCGCCCGCTTTGCGCAAATT
GTAGTTGGGCTTGGCACGCTGGTCTCTCAAAGCCTTCCACTCGTCAAGGG
TCATCTGCTTGGACTCATCCTCTTCGGCGGCGACCGCGGGATCAGCCGAC
TGTTCGTTGGCCGAGTCCTCCTTTTCCGCCTGCGGTGAGGTCTCCCCGGT
CGTCTTTAAGTCCTCAATGTCCTGCTTCGGGGAGCCCCAGTTGTGGGCAC
CACCGCCTTCGCGCTTGTCAATTGACTTGACGCCAGTTCTATCGGATCCC
GACTGGCGATCGAACTCGCGCTTTCCGAACTTCTCGCCGGTACGGACGCG
TGGTGGTCCCTGTTGTCACGATTGTTGAATTGACGCTGCGGCAACTCGTT
TCCGAATTCTCCGTTCGACTCTTTATTTCCGTA

BS09261.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11844-PB 1332 CG11844-RB 489..1332 860..17 4220 100 Minus
CG11844-PC 1239 CG11844-RC 396..1239 860..17 4220 100 Minus
CG11844-PA 1239 CG11844-RA 396..1239 860..17 4220 100 Minus
CG11844-PB 1332 CG11844-RB 415..490 933..858 355 98.6 Minus
CG11844-PC 1239 CG11844-RC 322..397 933..858 355 98.6 Minus
CG11844-PA 1239 CG11844-RA 322..397 933..858 355 98.6 Minus
CG4170-PD 1473 vig-RD 652..716 823..759 200 92.3 Minus
CG4170-PC 1473 vig-RC 652..716 823..759 200 92.3 Minus
CG4170-PA 1473 vig-RA 652..716 823..759 200 92.3 Minus
CG4170-PB 1473 vig-RB 652..716 823..759 200 92.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
vig2-RD 1553 CG11844-RD 373..1290 933..17 4550 99.8 Minus
vig2-RA 1549 CG11844-RA 369..1286 933..17 4550 99.8 Minus
vig2-RC 1701 CG11844-RC 521..1438 933..17 4550 99.8 Minus
vig2-RD 1553 CG11844-RD 988..1115 286..162 320 85.3 Minus
vig2-RD 1553 CG11844-RD 1021..1145 319..192 320 85.3 Minus
vig2-RA 1549 CG11844-RA 984..1111 286..162 320 85.3 Minus
vig2-RA 1549 CG11844-RA 1017..1141 319..192 320 85.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25124589..25125356 784..17 3840 100 Minus
Y 3667352 Y 3023506..3024026 784..264 2425 97.7 Minus
3R 32079331 3R 25123965..25124116 933..783 695 98.7 Minus
Y 3667352 Y 3022885..3023036 933..783 635 96.1 Minus
3R 32079331 3R 25125054..25125181 286..162 290 83.6 Minus
3R 32079331 3R 25125087..25125211 319..192 290 83.6 Minus
2L 23513712 2L 15064789..15064902 372..485 240 80.7 Plus
Y 3667352 Y 3023971..3024026 286..231 205 91.1 Minus
Blast to na_te.dros performed 2015-01-31 14:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 1496..1540 544..501 123 77.8 Minus

BS09261.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:10 Download gff for BS09261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11844-PA 323..1239 17..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:12 Download gff for BS09261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11844-PA 323..1239 17..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:03:31 Download gff for BS09261.3prime
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 522..1447 5..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:27:03 Download gff for BS09261.3prime
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 522..1447 5..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:27:03 Download gff for BS09261.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25123966..25124115 784..932 98 -> Minus
3R 25124590..25125365 5..783 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:03:31 Download gff for BS09261.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20949688..20949837 784..932 98 -> Minus
arm_3R 20950312..20951087 5..783 99   Minus

BS09261.5prime Sequence

790 bp (787 high quality bases) assembled on 2006-01-28

> BS09261.5prime
GAAGTTATCAGTCGACATGGACAATTCTGGAAATAACCGCTACGAGCTGT
TGTTCATGGACGACGATGACTCCTCTGGGCTCGCACAGCCACAGATTGCC
GCTGTAGTCGCGGCGCCCAAGAAGCCGGAACCGGCAAAGGCGCCAAAGGC
ACCAAAGAGCAAGTCGGAGAAGGAGAACAAGCCGGTTGTGGCTGCCCGCA
AGGCCAACGCTCCGGTGGCTAAAAACGCTAGTCCAGTGAAAGGCGGCAAG
GGTCCCGCTGGCGGGGATGTGGGTCGTCCCAAGAACCCAACAGCAAACGG
TGCCAACAACCAGGGCAGGTTCAACAACAACCAACGCTACGGAAATAAGG
AGTCGAACGGAGAATTCGGAAACGAGTTGCCGCAGCGTCAATTCAACAAT
CGTGACAACAGGGGACCACCACGCGTCCGTACCGGCGAGAAGTTCGGAAA
GCGCGAGTTCGATCGCCAGTCGGGATCCGATAGAACTGGCGTCAAGTCAA
TTGACAAGCGCGAAGGCGGTGGTGCCCACAACTGGGGCTCCCCGAAGCAG
GACATTGAGGACTTAAAGACGACCGGGGAGACCTCACCGCAGGCGGAAAA
GGAGGACTCGGCCAACGAACAGTCGGCTGATCCCGCGGTCGCCGCCGAAG
AGGATGAGTCCAAGCAGATGACCCTTGACGAGTGGAAGGCTTTGAGAGAC
CAGCGTGCCAAGCCCAACTACAATTTGCGCAAAGCGGGCGAGGGAGCCGC
CGACAATGCCGAGTGGAAGAAGATGATCGTGCTGAGCAAG

BS09261.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11844-PB 1332 CG11844-RB 93..867 16..790 3875 100 Plus
CG11844-PC 1239 CG11844-RC 1..774 17..790 3870 100 Plus
CG11844-PA 1239 CG11844-RA 1..774 17..790 3870 100 Plus
CG4170-PD 1473 vig-RD 652..716 449..513 200 92.3 Plus
CG4170-PC 1473 vig-RC 652..716 449..513 200 92.3 Plus
CG4170-PA 1473 vig-RA 652..716 449..513 200 92.3 Plus
CG4170-PB 1473 vig-RB 652..716 449..513 200 92.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
vig2-RD 1553 CG11844-RD 51..825 16..790 3875 100 Plus
vig2-RA 1549 CG11844-RA 47..821 16..790 3875 100 Plus
vig2-RC 1701 CG11844-RC 199..973 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25123643..25124116 16..489 2370 100 Plus
Y 3667352 Y 3022563..3023036 16..489 2190 97.5 Plus
3R 32079331 3R 25124589..25124891 488..790 1515 100 Plus
Y 3667352 Y 3023506..3023808 488..790 1470 99 Plus
Blast to na_te.dros performed 2015-02-10 22:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 1496..1540 728..771 123 77.8 Plus

BS09261.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:11 Download gff for BS09261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11844-PB 90..867 9..790 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:13 Download gff for BS09261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11844-PB 90..867 9..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:11 Download gff for BS09261.5prime
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 196..973 9..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:41 Download gff for BS09261.5prime
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 196..973 9..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:41 Download gff for BS09261.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25123640..25124115 9..488 99 -> Plus
3R 25124590..25124891 489..790 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:11 Download gff for BS09261.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20949362..20949837 9..488 99 -> Plus
arm_3R 20950312..20950613 489..790 100   Plus

BS09261.complete Sequence

1271 bp (1271 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636384

> BS09261.complete
GAAGTTATCAGTCGACATGGACAATTCTGGAAATAACCGCTACGAGCTGT
TGTTCATGGACGACGATGACTCCTCTGGGCTCGCACAGCCACAGATTGCC
GCTGTAGTCGCGGCGCCCAAGAAGCCGGAACCGGCAAAGGCGCCAAAGGC
ACCAAAGAGCAAGTCGGAGAAGGAGAACAAGCCGGTTGTGGCTGCCCGCA
AGGCCAACGCTCCGGTGGCTAAAAACGCTAGTCCAGTGAAAGGCGGCAAG
GGTCCCGCTGGCGGGGATGTGGGTCGTCCCAAGAACCCAACAGCAAACGG
TGCCAACAACCAGGGCAGGTTCAACAACAACCAACGCTACGGAAATAAGG
AGTCGAACGGAGAATTCGGAAACGAGTTGCCGCAGCGTCAATTCAACAAT
CGTGACAACAGGGGACCACCACGCGTCCGTACCGGCGAGAAGTTCGGAAA
GCGCGAGTTCGATCGCCAGTCGGGATCCGATAGAACTGGCGTCAAGTCAA
TTGACAAGCGCGAAGGCGGTGGTGCCCACAACTGGGGCTCCCCGAAGCAG
GACATTGAGGACTTAAAGACGACCGGGGAGACCTCACCGCAGGCGGAAAA
GGAGGACTCGGCCAACGAACAGTCGGCTGATCCCGCGGTCGCCGCCGAAG
AGGATGAGTCCAAGCAGATGACCCTTGACGAGTGGAAGGCTTTGAGAGAC
CAGCGTGCCAAGCCCAACTACAATTTGCGCAAAGCGGGCGAGGGAGCCGC
CGACAATGCCGAGTGGAAGAAGATGATCGTGCTGAGCAAGAAGAAGGAGA
GCAACAGCGAAGACGAGTTGGAGTATGATCCATCGCTGTATCCTCAGCGC
GTGGGCCGCCTTCAGCGCATCGTGGACATCCAGTTCAACTTCAATGATGG
ACGCAAGGTCGGATTCCGCAAGGGACCTCGCCCCGGAGCCGGTCCTCGCG
AGGGTGGCTTCCGCAATGACGGACCTCGCGGAGAAGGTGGCTATCGCAAT
GACGGACCTCGCGGAGAAGGTGGTTATCGCAACGACGGACCTCGCGGAGA
GGGTCCACGCAATGAGGGACCGCGTGGAGAAGGCTACCGCAATGACGGAC
CGCGTGGAGAGGGATTCCGTGGTCCCCGCTTTAACAACGGACCCAGCAAC
GGCTATGAAAACAGACAAGACAACAACAGATTCGGAGAGAAACGCCGCTC
CGCCCAGAAGCCACTGAAGGTTGACGATGAAGCTCAATTCCCCACTCTGT
GCTAGAAGCTTTCTAGACCAT

BS09261.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
vig2-RB 1332 CG11844-PB 93..1332 16..1255 6200 100 Plus
vig2-RD 1239 CG11844-PD 1..1239 17..1255 6195 100 Plus
vig2-RA 1239 CG11844-PA 1..1239 17..1255 6195 100 Plus
vig2-RB 1332 CG11844-PB 1030..1157 986..1110 290 83.6 Plus
vig2-RB 1332 CG11844-PB 1063..1187 953..1080 290 83.6 Plus
vig2-RD 1239 CG11844-PD 937..1064 986..1110 290 83.6 Plus
vig2-RD 1239 CG11844-PD 970..1094 953..1080 290 83.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
vig2-RD 1553 CG11844-RD 51..1290 16..1255 6200 100 Plus
vig2-RA 1549 CG11844-RA 47..1286 16..1255 6200 100 Plus
vig2-RC 1701 CG11844-RC 199..1438 16..1255 6200 100 Plus
vig2-RD 1553 CG11844-RD 988..1115 986..1110 290 83.6 Plus
vig2-RD 1553 CG11844-RD 1021..1145 953..1080 290 83.6 Plus
vig2-RA 1549 CG11844-RA 984..1111 986..1110 290 83.6 Plus
vig2-RA 1549 CG11844-RA 1017..1141 953..1080 290 83.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25124589..25125356 488..1255 3840 100 Plus
Y 3667352 Y 3023506..3024026 488..1008 2425 97.7 Plus
3R 32079331 3R 25123643..25124116 16..489 2370 100 Plus
Y 3667352 Y 3022563..3023036 16..489 2190 97.5 Plus
3R 32079331 3R 25125054..25125181 986..1110 290 83.6 Plus
3R 32079331 3R 25125087..25125211 953..1080 290 83.6 Plus
2L 23513712 2L 15064789..15064902 900..787 240 80.7 Minus
Y 3667352 Y 3023971..3024026 986..1041 205 91.1 Plus
Blast to na_te.dros performed 2014-11-27 06:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 1496..1540 728..771 123 77.8 Plus

BS09261.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:44 Download gff for BS09261.complete
Subject Subject Range Query Range Percent Splice Strand
CG11844-RB 90..1332 9..1255 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:13 Download gff for BS09261.complete
Subject Subject Range Query Range Percent Splice Strand
CG11844-RA 28..1279 9..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:43 Download gff for BS09261.complete
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 200..1438 17..1255 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:44 Download gff for BS09261.complete
Subject Subject Range Query Range Percent Splice Strand
CG11844-RA 28..1279 9..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:47 Download gff for BS09261.complete
Subject Subject Range Query Range Percent Splice Strand
vig2-RC 200..1438 17..1255 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:47 Download gff for BS09261.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25123644..25124115 17..488 100 -> Plus
3R 25124590..25125356 489..1255 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:43 Download gff for BS09261.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20949366..20949837 17..488 100 -> Plus
arm_3R 20950312..20951078 489..1255 100   Plus

BS09261.pep Sequence

Translation from 16 to 1254

> BS09261.pep
MDNSGNNRYELLFMDDDDSSGLAQPQIAAVVAAPKKPEPAKAPKAPKSKS
EKENKPVVAARKANAPVAKNASPVKGGKGPAGGDVGRPKNPTANGANNQG
RFNNNQRYGNKESNGEFGNELPQRQFNNRDNRGPPRVRTGEKFGKREFDR
QSGSDRTGVKSIDKREGGGAHNWGSPKQDIEDLKTTGETSPQAEKEDSAN
EQSADPAVAAEEDESKQMTLDEWKALRDQRAKPNYNLRKAGEGAADNAEW
KKMIVLSKKKESNSEDELEYDPSLYPQRVGRLQRIVDIQFNFNDGRKVGF
RKGPRPGAGPREGGFRNDGPRGEGGYRNDGPRGEGGYRNDGPRGEGPRNE
GPRGEGYRNDGPRGEGFRGPRFNNGPSNGYENRQDNNRFGEKRRSAQKPL
KVDDEAQFPTLC*

BS09261.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
vig2-PD 412 CG11844-PD 1..412 1..412 2217 100 Plus
vig2-PA 412 CG11844-PA 1..412 1..412 2217 100 Plus
vig2-PC 412 CG11844-PC 1..412 1..412 2217 100 Plus
vig2-PB 443 CG11844-PB 32..443 1..412 2217 100 Plus
fdy-PB 350 CR41503-PB 21..350 1..330 1674 96.1 Plus