Clone BS09265 Report

Search the DGRC for BS09265

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptPxn-RB
Protein status:BS09265.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09265.3prime Sequence

858 bp (846 high quality bases) assembled on 2006-01-29

> BS09265.3prime
ATGGTCTAGAAAGCTTTTACTCACCCTTCAGCTCGATGCGGGCGGTGGCC
TGGACGCTGCCCAAAGAATTGCGAGCCTCGCAGCGATACGTGCCGGCAGA
GAGCTGGTTGGGCTGCAGCAGGATGAGGCTGCCATTGGCCTGCAGTTGGA
GGCTGGGTGTAGACTGCAAGAGTTGGCGGCCATTGACGAACCATTGTATG
TCCGGCTGTGGCCAGCCGGAGGCGGCGCAATCGAGCAGCACGTGTCCAGA
GCCGTGAAGGGCCACAATTTGGTCGTGCGGCTGGTGGGTAAAGTGCGGTG
GCGATGGCAATGGCGATGGCAGTGGCGTTGCTCCGTGCATGGGTGTTCCG
GCATCCGCCCACACCTGATTGCTGCGGGCGTCGATGGGCGAATCGAGTGG
GTGGTTACCGCCATTAACTACCAGGCGAACGGGTTGGGAACGCAGTGCGC
CCATCTCGTTGCGAGCGATGCACTGGTAGATGCCCATGTCGCTGGTGTCC
GCGCTGCGGATGAGCAGACTGCCGCTGGGCAGGATCTCCGCCTGTGCCTG
CTCCTCCAAGCCCAACTCCTGCGTGTTGTGCATCCACGTGATCTGGGGGC
GGGGCAGGCCGGTGACCTCGCAGCTCAGCTCCACCTGCTCCCCGGCAGCG
ACTTGGGCATCTTGTGGTGCCACCAGGAACTGCGGCTTGGCGCATTTGAA
GTGATGCTCGCCCAGGCTGGAAAAGCCCTGGTTTTGGAGCATCTGGNGAG
CGGCACAGGTGAGCGAAATGGACACCAACTGGCGCTGCACATCCAGGTGC
CAGCGACGCCAGAGCGAGTAGACGCCACAATTGCAATCGATGGCGTTGCC
GTCCAGTC

BS09265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12002-PB 1374 Pxn-RB 533..1374 858..17 4191 99.8 Minus
CG12002-PA 4584 Pxn-RA 533..1366 858..25 4151 99.8 Minus
CG12002-PC 4584 Pxn-RC 533..1366 858..25 4151 99.8 Minus
CG12002-PD 4584 Pxn-RD 533..1366 858..25 4151 99.8 Minus
CG12002-PE 4584 Pxn-RE 533..1366 858..25 4151 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pxn-RB 2492 CG12002-RB 900..1742 858..16 4204 99.9 Minus
Pxn-RE 4820 CG12002-RE 594..1427 858..25 4159 99.9 Minus
Pxn-RD 5196 CG12002-RD 970..1803 858..25 4159 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2610485..2611160 16..691 3380 100 Plus
3L 28110227 3L 2611316..2611483 691..858 829 99.4 Plus
Blast to na_te.dros performed on 2015-02-06 12:59:59 has no hits.

BS09265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:19 Download gff for BS09265.3prime
Subject Subject Range Query Range Percent Splice Strand
Pxn-PB 533..1374 17..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:24 Download gff for BS09265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12002-PB 533..1374 17..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:06:29 Download gff for BS09265.3prime
Subject Subject Range Query Range Percent Splice Strand
Pxn-RB 908..1753 13..858 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:45 Download gff for BS09265.3prime
Subject Subject Range Query Range Percent Splice Strand
Pxn-RB 900..1745 13..858 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:45 Download gff for BS09265.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2610482..2611159 13..690 99 <- Plus
3L 2611316..2611483 691..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:06:29 Download gff for BS09265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2610482..2611159 13..690 99 <- Plus
arm_3L 2611316..2611483 691..858 99   Plus

BS09265.5prime Sequence

851 bp (761 high quality bases) assembled on 2006-01-29

> BS09265.5prime
GAAGTTATCAGTCGACATGCGATTTATGCTGCTCATGCTGCAGCTGCTCG
GCCTGCTGCTCCTCCTCGCCGGCGGAGTGCAGTCCGTCTACTGTCCGGCT
GGATGCACCTGCTTGGAGCGAACCGTGCGCTGCATCCGCGCCAAGCTGTC
CGCCGTGCCGAAACTGCCCCAGGATACACAAACGCTAGATTTGCGTTTCA
ATCACATCGAGGAGCTGCCGGCCAACGCGTTCAGTGGTCTCGCCCAGCTG
ACTACGCTTTTTCTGAACGACAACGAGCTGGCTTACCTGCAGGATGGGGC
TCTCAATGGACTGACGGCGCTGAGGTTCGTCTATCTGAACAATAATCGGC
TAAGCCGCTTACCGGCGACCATCTTCCAGCGGATGCCGCGCCTGGAGGCG
ATTTTCCTGGAAAACAATGACATTTGGCAGCTGCCCGCCGGGCTCTTTGA
CAACTTGCCGCGTCTGAATCGCCTGATCATGTACAACAACAAGCTGACCC
AACTGCCTGTGGACGGATTCAATCGACTGAACAACCTGAAGCGCCTGCGA
CTGGACGGCAACGCCATCGATTGCAATTGTGGCGTCTACTCGCTCTGGCG
TCGCTGGCACCTGGATGTGCAGCGCCAGTTGGTGTCCATTTCGCTCACCT
GTGCCGCTCCCCAGATGCTCCAAAACCAGGGCTTTTCCAGCCTGGGCGAG
CATCACTTCAAATGCGCCAAGCCGCAGTTCCTGGTGGCACCACAAGATGC
CCAAGTCGCTGCCGGGGAGCAGGTGGAGCTGAGCTGCGAGGTCACCGGCC
TGCCCCGCCCCCAGATCACGTGGATGCACAACACGCAGGAGTTGGGCTTG
G

BS09265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12002-PA 4584 Pxn-RA 1..835 17..851 4175 100 Plus
CG12002-PC 4584 Pxn-RC 1..835 17..851 4175 100 Plus
CG12002-PD 4584 Pxn-RD 1..835 17..851 4175 100 Plus
CG12002-PE 4584 Pxn-RE 1..835 17..851 4175 100 Plus
CG12002-PB 1374 Pxn-RB 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
Pxn-RB 2492 CG12002-RB 363..1202 12..851 4185 99.9 Plus
Pxn-RE 4820 CG12002-RE 57..896 12..851 4185 99.9 Plus
Pxn-RD 5196 CG12002-RD 433..1272 12..851 4185 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2611316..2611557 716..475 1210 100 Minus
3L 28110227 3L 2611788..2612003 402..187 1080 100 Minus
3L 28110227 3L 2629141..2629315 186..12 860 99.4 Minus
3L 28110227 3L 2611025..2611160 851..716 680 100 Minus
3L 28110227 3L 2611638..2611710 475..403 365 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:37:52 has no hits.

BS09265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:21 Download gff for BS09265.5prime
Subject Subject Range Query Range Percent Splice Strand
Pxn-PB 1..835 17..851 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:25 Download gff for BS09265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12002-PB 1..835 17..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:19:44 Download gff for BS09265.5prime
Subject Subject Range Query Range Percent Splice Strand
Pxn-RD 441..1280 12..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:09 Download gff for BS09265.5prime
Subject Subject Range Query Range Percent Splice Strand
Pxn-RD 433..1272 12..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:09 Download gff for BS09265.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2611025..2611159 717..851 100 <- Minus
3L 2611316..2611557 475..716 100 <- Minus
3L 2611639..2611710 403..474 100 <- Minus
3L 2611788..2612003 187..402 100 <- Minus
3L 2629141..2629315 12..186 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:19:44 Download gff for BS09265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2629141..2629315 12..186 99   Minus
arm_3L 2611025..2611159 717..851 100 <- Minus
arm_3L 2611316..2611557 475..716 100 <- Minus
arm_3L 2611639..2611710 403..474 100 <- Minus
arm_3L 2611788..2612003 187..402 100 <- Minus

BS09265.complete Sequence

1406 bp (1406 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636385

> BS09265.complete
GAAGTTATCAGTCGACATGCGATTTATGCTGCTCATGCTGCAGCTGCTCG
GCCTGCTGCTCCTCCTCGCCGGCGGAGTGCAGTCCGTCTACTGTCCGGCT
GGATGCACCTGCTTGGAGCGAACCGTGCGCTGCATCCGCGCCAAGCTGTC
CGCCGTGCCGAAACTGCCCCAGGATACACAAACGCTAGATTTGCGTTTCA
ATCACATCGAGGAGCTGCCGGCCAACGCGTTCAGTGGTCTCGCCCAGCTG
ACTACGCTTTTTCTGAACGACAACGAGCTGGCTTACCTGCAGGATGGGGC
TCTCAATGGACTGACGGCGCTGAGGTTCGTCTATCTGAACAATAATCGGC
TAAGCCGCTTACCGGCGACCATCTTCCAGCGGATGCCGCGCCTGGAGGCG
ATTTTCCTGGAAAACAATGACATTTGGCAGCTGCCCGCCGGGCTCTTTGA
CAACTTGCCGCGTCTGAATCGCCTGATCATGTACAACAACAAGCTGACCC
AACTGCCTGTGGACGGATTCAATCGACTGAACAACCTGAAGCGCCTGCGA
CTGGACGGCAACGCCATCGATTGCAATTGTGGCGTCTACTCGCTCTGGCG
TCGCTGGCACCTGGATGTGCAGCGCCAGTTGGTGTCCATTTCGCTCACCT
GTGCCGCTCCCCAGATGCTCCAAAACCAGGGCTTTTCCAGCCTGGGCGAG
CATCACTTCAAATGCGCCAAGCCGCAGTTCCTGGTGGCACCACAAGATGC
CCAAGTCGCTGCCGGGGAGCAGGTGGAGCTGAGCTGCGAGGTCACCGGCC
TGCCCCGCCCCCAGATCACGTGGATGCACAACACGCAGGAGTTGGGCTTG
GAGGAGCAGGCACAGGCGGAGATCCTGCCCAGCGGCAGTCTGCTCATCCG
CAGCGCGGACACCAGCGACATGGGCATCTACCAGTGCATCGCTCGCAACG
AGATGGGCGCACTGCGTTCCCAACCCGTTCGCCTGGTAGTTAATGGCGGT
AACCACCCACTCGATTCGCCCATCGACGCCCGCAGCAATCAGGTGTGGGC
GGATGCCGGAACACCCATGCACGGAGCAACGCCACTGCCATCGCCATTGC
CATCGCCACCGCACTTTACCCACCAGCCGCACGACCAAATTGTGGCCCTT
CACGGCTCTGGACACGTGCTGCTCGATTGCGCCGCCTCCGGCTGGCCACA
GCCGGACATACAATGGTTCGTCAATGGCCGCCAACTCTTGCAGTCTACAC
CCAGCCTCCAACTGCAGGCCAATGGCAGCCTCATCCTGCTGCAGCCCAAC
CAGCTCTCTGCCGGCACGTATCGCTGCGAGGCTCGCAATTCTTTGGGCAG
CGTCCAGGCCACCGCCCGCATCGAGCTGAAGGGTGAGTAAAAGCTTTCTA
GACCAT

BS09265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Pxn-RB 1374 CG12002-PB 1..1374 17..1390 6870 100 Plus
Pxn-RE 4584 CG12002-PE 1..1366 17..1382 6830 100 Plus
Pxn-RD 4584 CG12002-PD 1..1366 17..1382 6830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pxn-RB 2492 CG12002-RB 363..1742 12..1391 6885 99.9 Plus
Pxn-RE 4820 CG12002-RE 57..1427 12..1382 6840 99.9 Plus
Pxn-RD 5196 CG12002-RD 433..1803 12..1382 6840 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2610485..2611160 1391..716 3380 100 Minus
3L 28110227 3L 2611316..2611557 716..475 1210 100 Minus
3L 28110227 3L 2611788..2612003 402..187 1080 100 Minus
3L 28110227 3L 2629141..2629315 186..12 860 99.4 Minus
3L 28110227 3L 2611638..2611710 475..403 365 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:57:01 has no hits.

BS09265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:45 Download gff for BS09265.complete
Subject Subject Range Query Range Percent Splice Strand
Pxn-RB 1..1374 17..1390 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:06 Download gff for BS09265.complete
Subject Subject Range Query Range Percent Splice Strand
Pxn-RB 376..1747 17..1388 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:02 Download gff for BS09265.complete
Subject Subject Range Query Range Percent Splice Strand
Pxn-RB 376..1747 17..1388 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:45 Download gff for BS09265.complete
Subject Subject Range Query Range Percent Splice Strand
Pxn-RB 371..1753 12..1394 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:39 Download gff for BS09265.complete
Subject Subject Range Query Range Percent Splice Strand
Pxn-RB 368..1739 17..1388 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:39 Download gff for BS09265.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2610488..2611159 717..1388 100 <- Minus
3L 2611316..2611557 475..716 100 <- Minus
3L 2611639..2611710 403..474 100 <- Minus
3L 2611788..2612003 187..402 100 <- Minus
3L 2629141..2629310 17..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:02 Download gff for BS09265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2610488..2611159 717..1388 100 <- Minus
arm_3L 2611316..2611557 475..716 100 <- Minus
arm_3L 2611639..2611710 403..474 100 <- Minus
arm_3L 2611788..2612003 187..402 100 <- Minus
arm_3L 2629141..2629310 17..186 100   Minus

BS09265.pep Sequence

Translation from 16 to 1389

> BS09265.pep
MRFMLLMLQLLGLLLLLAGGVQSVYCPAGCTCLERTVRCIRAKLSAVPKL
PQDTQTLDLRFNHIEELPANAFSGLAQLTTLFLNDNELAYLQDGALNGLT
ALRFVYLNNNRLSRLPATIFQRMPRLEAIFLENNDIWQLPAGLFDNLPRL
NRLIMYNNKLTQLPVDGFNRLNNLKRLRLDGNAIDCNCGVYSLWRRWHLD
VQRQLVSISLTCAAPQMLQNQGFSSLGEHHFKCAKPQFLVAPQDAQVAAG
EQVELSCEVTGLPRPQITWMHNTQELGLEEQAQAEILPSGSLLIRSADTS
DMGIYQCIARNEMGALRSQPVRLVVNGGNHPLDSPIDARSNQVWADAGTP
MHGATPLPSPLPSPPHFTHQPHDQIVALHGSGHVLLDCAASGWPQPDIQW
FVNGRQLLQSTPSLQLQANGSLILLQPNQLSAGTYRCEARNSLGSVQATA
RIELKGE*

BS09265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
Pxn-PB 457 CG12002-PB 1..457 1..457 2401 100 Plus
Pxn-PE 1527 CG12002-PE 1..455 1..455 2390 100 Plus
Pxn-PD 1527 CG12002-PD 1..455 1..455 2390 100 Plus
Pxn-PC 1527 CG12002-PC 1..455 1..455 2390 100 Plus
Pxn-PA 1527 CG12002-PA 1..455 1..455 2390 100 Plus