Clone BS09266 Report

Search the DGRC for BS09266

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptImpL2-RB
Protein status:BS09266.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09266.3prime Sequence

822 bp (729 high quality bases) assembled on 2006-01-29

> BS09266.3prime
ATGGTCTAGAAAGCTTTTAGTCTTCCTCATTAAGTACGGGATACACGAAG
GTATCGGCGGTATCCTTTCCGACGACGTTGCGGGCTATGCACTTGTAGTT
GCCCATATCCTCCCACTTGATCTCGGAGATCAGAAGATCGCCGTTGGCCA
GCACCCTGTGGCGATGTCCTTGGACGATCTCCTTGTTCTCGTTATTCAAC
CAGGTGATCTCGGCGCGGGGACGGGCGTGCACGCGGCAGGGCAGCTGAAT
GTTGGAGCCCATGAGGTCCAGATGCGTCTTCTCGGTGTAGATGATTCGCG
GTTTCTGGGCACCCGGGTAGGTCTTCTCCGGCGTCAGACGAGAGGAGCGA
GGAGGATGCACCACAGTGCTGGCATAGATGGTCTTGGAGCCAGTGCGTCC
CACACACGTGTAGGTGCGGGCCTCGCTCAGCACGTGGTCGATGATATGCG
ACGATCGGACGCGCACAATGGCACTGGGCGCCTCTTCGGCAACCTGGTTG
GAGTCCAGATCATCGAGCTCCGAGCGGGGCAGGTGACCCACCACCCACTG
GATGCTGGGCACTTGGGAGCCCATCATCTCGCAAACGATCTCGATGGTGG
CTCCATCGGCCTGCTGCAGCTTCGTCGGCGGCGTCTTGGTGAACTTGAGC
CAGTCGGCTTCGAAGGCTCGGTTGCGTGGCTTCTCCTCCTCCGCCTCGAT
GGAGTTATCCACGTCGTTGCTATCGTCTACCAGGTCCACGGCTCTTCCGC
GGACAGTGGCGATGCTGCCGAACAGCAGCAGCGCTAAGGCGCACACATGT
AAATTCATGTCGACTGATAACT

BS09266.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15009-PA 801 ImpL2-RA 10..801 808..17 3960 100 Minus
CG15009-PB 792 ImpL2-RB 1..792 808..17 3960 100 Minus
CG15009-PC 804 ImpL2-RC 13..804 808..17 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 2355 CG15009-RD 733..1525 808..16 3965 100 Minus
ImpL2-RC 989 CG15009-RC 71..863 808..16 3965 100 Minus
ImpL2-RB 1651 CG15009-RB 733..1525 808..16 3965 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225703 32..808 3885 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:57:33 has no hits.

BS09266.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:22 Download gff for BS09266.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-PB 1..792 17..808 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:27 Download gff for BS09266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..804 17..818 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:35 Download gff for BS09266.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1532 7..815 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:49:38 Download gff for BS09266.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1532 7..815 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:49:38 Download gff for BS09266.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225709 32..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:35 Download gff for BS09266.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225709 32..816 99   Plus

BS09266.5prime Sequence

822 bp (810 high quality bases) assembled on 2006-01-29

> BS09266.5prime
GAAGTTATCAGTCGACATGAATTTACATGTGTGCGCCTTAGCGCTGCTGC
TGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTGGACCTGGTAGAC
GATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGAGGAGAAGCCACG
CAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCAAGACGCCGCCGA
CGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATCGTTTGCGAGATG
ATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGGTCACCTGCCCCG
CTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCGAAGAGGCGCCCA
GTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGACCACGTGCTGAGC
GAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTCCAAGACCATCTA
TGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTCTGACGCCGGAGA
AGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTACACCGAGAAGACG
CATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTGCCGCGTGCACGC
CCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGAACAAGGAGATCG
TCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGATCTTCTGATCTCC
GAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCATAGCCCGCAACGT
CGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCGTACTTAATGAGG
AAGACTAAAAGCTTTCTAGACC

BS09266.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15009-PA 801 ImpL2-RA 10..801 17..808 3960 100 Plus
CG15009-PB 792 ImpL2-RB 1..792 17..808 3960 100 Plus
CG15009-PC 804 ImpL2-RC 13..804 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 2355 CG15009-RD 733..1525 17..809 3965 100 Plus
ImpL2-RC 989 CG15009-RC 71..863 17..809 3965 100 Plus
ImpL2-RB 1651 CG15009-RB 733..1525 17..809 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225703 793..17 3885 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:27:14 has no hits.

BS09266.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:24 Download gff for BS09266.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-PB 1..792 17..808 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:28 Download gff for BS09266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15009-PC 1..804 7..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:19:33 Download gff for BS09266.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1532 10..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:49:32 Download gff for BS09266.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 727..1532 10..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:49:32 Download gff for BS09266.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225709 9..793 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:19:33 Download gff for BS09266.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225709 9..793 99   Minus

BS09266.complete Sequence

824 bp (824 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636386

> BS09266.complete
GAAGTTATCAGTCGACATGAATTTACATGTGTGCGCCTTAGCGCTGCTGC
TGTTCGGCAGCATCGCCACTGTCCGCGGAAGAGCCGTGGACCTGGTAGAC
GATAGCAACGACGTGGATAACTCCATCGAGGCGGAGGAGGAGAAGCCACG
CAACCGAGCCTTCGAAGCCGACTGGCTCAAGTTCACCAAGACGCCGCCGA
CGAAGCTGCAGCAGGCCGATGGAGCCACCATCGAGATCGTTTGCGAGATG
ATGGGCTCCCAAGTGCCCAGCATCCAGTGGGTGGTGGGTCACCTGCCCCG
CTCGGAGCTCGATGATCTGGACTCCAACCAGGTTGCCGAAGAGGCGCCCA
GTGCCATTGTGCGCGTCCGATCGTCGCATATCATCGACCACGTGCTGAGC
GAGGCCCGCACCTACACGTGTGTGGGACGCACTGGCTCCAAGACCATCTA
TGCCAGCACTGTGGTGCATCCTCCTCGCTCCTCTCGTCTGACGCCGGAGA
AGACCTACCCGGGTGCCCAGAAACCGCGAATCATCTACACCGAGAAGACG
CATCTGGACCTCATGGGCTCCAACATTCAGCTGCCCTGCCGCGTGCACGC
CCGTCCCCGCGCCGAGATCACCTGGTTGAATAACGAGAACAAGGAGATCG
TCCAAGGACATCGCCACAGGGTGCTGGCCAACGGCGATCTTCTGATCTCC
GAGATCAAGTGGGAGGATATGGGCAACTACAAGTGCATAGCCCGCAACGT
CGTCGGAAAGGATACCGCCGATACCTTCGTGTATCCCGTACTTAATGAGG
AAGACTAAAAGCTTTCTAGACCAT

BS09266.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 792 CG15009-PD 1..792 17..808 3960 100 Plus
ImpL2-RC 804 CG15009-PC 13..804 17..808 3960 100 Plus
ImpL2-RB 792 CG15009-PB 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-RD 2355 CG15009-RD 733..1525 17..809 3965 100 Plus
ImpL2-RC 989 CG15009-RC 71..863 17..809 3965 100 Plus
ImpL2-RB 1651 CG15009-RB 733..1525 17..809 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4224927..4225703 793..17 3885 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:54:39 has no hits.

BS09266.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:04 Download gff for BS09266.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 1..804 7..808 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:22 Download gff for BS09266.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 63..870 10..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:32 Download gff for BS09266.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 733..1522 17..806 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:04 Download gff for BS09266.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RC 63..870 10..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:37 Download gff for BS09266.complete
Subject Subject Range Query Range Percent Splice Strand
ImpL2-RB 733..1522 17..806 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:37 Download gff for BS09266.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4224927..4225703 17..793 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:32 Download gff for BS09266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4224927..4225703 17..793 100   Minus

BS09266.pep Sequence

Translation from 16 to 807

> BS09266.pep
MNLHVCALALLLFGSIATVRGRAVDLVDDSNDVDNSIEAEEEKPRNRAFE
ADWLKFTKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRSELDD
LDSNQVAEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKTIYASTVV
HPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHARPRAE
ITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMGNYKCIARNVVGKDT
ADTFVYPVLNEED*

BS09266.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
ImpL2-PD 263 CG15009-PD 1..263 1..263 1375 100 Plus
ImpL2-PB 263 CG15009-PB 1..263 1..263 1375 100 Plus
ImpL2-PA 266 CG15009-PA 4..266 1..263 1375 100 Plus
ImpL2-PC 267 CG15009-PC 5..267 1..263 1375 100 Plus
Nrg-PH 1239 CG1634-PH 341..512 56..252 152 26.7 Plus