Clone Sequence Records
BS09267.3prime Sequence
938 bp (749 high quality bases) assembled on 2006-01-29
> BS09267.3prime
ATGGTCTAGAAAGCTTCTAGGCCTTGCCAGCGATGGGGGCGGCACCTTGT
TTCTGGTTCTCGTTTTCCTTCTCCAGCTGCTTGCCCAGGTATTCCCAATT
GTGTACCATCAGCTTTTGCACAGCCAGCAGGGCTTCGTATCGCACATTGG
GATCCTCGTGGCCAAGATGCTGCATCACGATCTGCTTGCCTCCGAGTTGT
TCCAAGACGTGCTTGCCGCGGGGATAGTGGCGCACATACTCCCCGATGTC
GAAGCAGGCGACGGAAAGGATGATGGCATCTTTTGAGGTTTCCAGGAGGT
GGACGAGGATGCGCAGCAACTCGTAGTTCTTTTCGTTTAGGCGCTGGGCA
TTCTCGCGCCAGAACTTGGCCGACTTGTGCACAGGCGACCATTCCAAGCG
ACCGCTGCGCACCTCTGTGGCGTACTCATCAAAGGAGCTCAAGTCTTGCA
CCGAATTCTGGAGCTTCTCGCTCAGGTACTCTACGTCGGCGGTAATGTCC
TCGTCGTCGAAGCGACGCTGCTCCAGGATGGATAGCTGCTTCAGCACCTT
GCACTGGACCATGGCGATGCAATGGTCCTTGGCCACCGATGAATCCTCCG
GCTTCTCGATCAGATTGCGGAAGACCGCGAGGATAATGCGTGTCACCTTC
TCCTTGGCACAATCGCTGAGGATATCAGCCAGGATGGGGATCACGCTGAA
CTTATTCATCTTGGCGGCCAGCAGGGGATTGAAGGTCAGCACCCACAGGC
AAAAGATCAACTGGTATTGCACCTGGAAGTTGACACGGGTCGACAAGATA
CGGATCAGAGTGCTGATTCCGTCGACTCCCACAAAGGCAAATCGATACTC
ATCCACACGGAGCATCATCTGCAGGCACCGGGCCACCGACTGGATGTATT
CGTTGTTATTTGCTGGCAGCTGATCCCTCAAGAACTGC
BS09267.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17332-PA | 1407 | VhaSFD-RA | 514..1407 | 910..17 | 4470 | 100 | Minus |
| CG17332-PB | 1629 | VhaSFD-RB | 739..1629 | 907..17 | 4455 | 100 | Minus |
| CG17332-PD | 1326 | VhaSFD-RD | 514..1319 | 910..105 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 2503 | CG17332-RE | 646..1567 | 938..17 | 4535 | 99.6 | Minus |
| VhaSFD-RA | 2154 | CG17332-RA | 646..1567 | 938..17 | 4535 | 99.6 | Minus |
| VhaSFD-RB | 2376 | CG17332-RB | 899..1789 | 907..17 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16724232..16724796 | 210..774 | 2825 | 100 | Plus |
| 2L | 23513712 | 2L | 16724856..16724993 | 770..907 | 690 | 100 | Plus |
| 2L | 23513712 | 2L | 16724057..16724171 | 95..209 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 16723819..16723898 | 17..96 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:11:12 has no hits.
BS09267.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:25 Download gff for
BS09267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17332-PA | 486..1407 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:29 Download gff for
BS09267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17332-PA | 486..1407 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:29:44 Download gff for
BS09267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 646..1567 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:51:16 Download gff for
BS09267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 646..1567 | 17..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:51:16 Download gff for
BS09267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16723819..16723897 | 17..95 | 100 | <- | Plus |
| 2L | 16724058..16724171 | 96..209 | 100 | <- | Plus |
| 2L | 16724232..16724794 | 210..772 | 100 | <- | Plus |
| 2L | 16724859..16725003 | 773..916 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:29:44 Download gff for
BS09267.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16723819..16723897 | 17..95 | 100 | <- | Plus |
| arm_2L | 16724058..16724171 | 96..209 | 100 | <- | Plus |
| arm_2L | 16724232..16724794 | 210..772 | 100 | <- | Plus |
| arm_2L | 16724859..16725003 | 773..916 | 97 | | Plus |
BS09267.5prime Sequence
937 bp (787 high quality bases) assembled on 2006-01-28
> BS09267.5prime
GAAGTTATCAGTCGACATGACTACCGCCTTGTATTTGCCCGAGGAGAACA
TTGATATGATTGCTGCCACCTCGGTGCTGCAGCAGCAGGCGGCGGACATC
CGCACCAGGACGATCAACTGGGCTTCGTACATGCAGTCGCAGATGATCAG
CGAGGAGGACTACAAGGCAATCAGCGCGTTGGACAAGTCACGTGCCAGCT
TCTTGGCCCAGAACTCCAGCCAGGTGGTGAAGACGCTGCTTAATCTGGTT
TCGCATCTGTCGAAGGACTCCACCATTCAGTACATCCTTGTGCTGCTCGA
CGATTTGCTGCAGGAGGATCGCTCCCGTGTGGATCTATTCCATGACACAG
CCGGCAAGCTGAAGCAGTGCATCTGGGGTCCGTTCCTGAACCTGCTGAAC
CGTCAGGATGGCTTTATTGTCAACATGTCGTCGCGCATCCTGGCCAAATT
CGCCTGCTGGGGCCATGAGACCATGCCCAAGTCCGACCTGAACTTCTATC
TGCAGTTCCTGAAGGATCAGCTGGCCAGCAATAACAACGAATACATCCAG
TCGGTGGCCCGGTGCCTGCAGATGATGCTCCGTGTGGATGAGTATCGATT
TGCCTTTGTGGGAGTCGACGGAATCAGCACTCTGATCCGTATCTTGTCGA
CCCGTGTCAACTTCCAGGTGCAATACCAGTTGATCTTTTGCCTGTGGGTG
CTGACCTTCAATCCCCTGCTGGCCGCCAAGATGAATAAGTTCAGCGTGAT
CCCCATCCTGGCTGATATCCTCAGCGATTGTGCCAAGGAGAAGGTGACAC
GCATTATCCTCGCGGTCTTCCGCAATCTGATCGAGAAGCCGGAGGATTCA
TCGGTGGGCAAGGACCATTGCATCGCCATGGTCCAGTGCAAGGTGCTGAA
GCAGCTATCATCCTGGAGCAGCGTCGCTTCGACGACG
BS09267.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17332-PA | 1407 | VhaSFD-RA | 1..893 | 17..909 | 4440 | 99.8 | Plus |
| CG17332-PD | 1326 | VhaSFD-RD | 1..893 | 17..909 | 4440 | 99.8 | Plus |
| CG17332-PB | 1629 | VhaSFD-RB | 1..516 | 17..532 | 2580 | 100 | Plus |
| CG17332-PB | 1629 | VhaSFD-RB | 739..1115 | 533..909 | 1860 | 99.7 | Plus |
| CG17332-PA | 1407 | VhaSFD-RA | 894..922 | 909..937 | 145 | 100 | Plus |
| CG17332-PD | 1326 | VhaSFD-RD | 894..922 | 909..937 | 145 | 100 | Plus |
| CG17332-PB | 1629 | VhaSFD-RB | 1116..1144 | 909..937 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 2503 | CG17332-RE | 161..1082 | 17..937 | 4570 | 99.8 | Plus |
| VhaSFD-RD | 2247 | CG17332-RD | 161..1082 | 17..937 | 4570 | 99.8 | Plus |
| VhaSFD-RA | 2154 | CG17332-RA | 161..1082 | 17..937 | 4570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16727010..16727489 | 532..53 | 2400 | 100 | Minus |
| 2L | 23513712 | 2L | 16724524..16724796 | 937..666 | 1300 | 99.3 | Minus |
| 2L | 23513712 | 2L | 16724856..16724993 | 670..533 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 16727630..16727666 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:36:13 has no hits.
BS09267.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:26 Download gff for
BS09267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17332-PD | 1..922 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:30 Download gff for
BS09267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17332-PD | 1..922 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:36 Download gff for
BS09267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 156..1082 | 12..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:27:29 Download gff for
BS09267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 156..1082 | 12..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:27:29 Download gff for
BS09267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16727010..16727488 | 54..532 | 100 | <- | Minus |
| 2L | 16727630..16727671 | 12..53 | 95 | | Minus |
| 2L | 16724524..16724794 | 668..937 | 99 | <- | Minus |
| 2L | 16724859..16724993 | 533..667 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:36 Download gff for
BS09267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16724859..16724993 | 533..667 | 100 | <- | Minus |
| arm_2L | 16724524..16724794 | 668..937 | 99 | <- | Minus |
| arm_2L | 16727010..16727488 | 54..532 | 100 | <- | Minus |
| arm_2L | 16727630..16727671 | 12..53 | 95 | | Minus |
BS09267.complete Sequence
1439 bp (1439 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636387
> BS09267.complete
GAAGTTATCAGTCGACATGACTACCGCCTTGTATTTGCCCGAGGAGAACA
TTGATATGATTGCTGCCACCTCGGTGCTGCAGCAGCAGGCGGCGGACATC
CGCACCAGGACGATCAACTGGGCTTCGTACATGCAGTCGCAGATGATCAG
CGAGGAGGACTACAAGGCAATCAGCGCGTTGGACAAGTCACGTGCCAGCT
TCTTGGCCCAGAACTCCAGCCAGGTGGTGAAGACGCTGCTTAATCTGGTT
TCGCATCTGTCGAAGGACTCCACCATTCAGTACATCCTTGTGCTGCTCGA
CGATTTGCTGCAGGAGGATCGCTCCCGTGTGGATCTATTCCATGACACAG
CCGGCAAGCTGAAGCAGTGCATCTGGGGTCCGTTCCTGAACCTGCTGAAC
CGTCAGGATGGCTTTATTGTCAACATGTCGTCGCGCATCCTGGCCAAATT
CGCCTGCTGGGGCCATGAGACCATGCCCAAGTCCGACCTGAACTTCTATC
TGCAGTTCCTGAAGGATCAGCTGGCCAGCAATAACAACGAATACATCCAG
TCGGTGGCCCGGTGCCTGCAGATGATGCTCCGTGTGGATGAGTATCGATT
TGCCTTTGTGGGAGTCGACGGAATCAGCACTCTGATCCGTATCTTGTCGA
CCCGTGTCAACTTCCAGGTGCAATACCAGTTGATCTTTTGCCTGTGGGTG
CTGACCTTCAATCCCCTGCTGGCCGCCAAGATGAATAAGTTCAGCGTGAT
CCCCATCCTGGCTGATATCCTCAGCGATTGTGCCAAGGAGAAGGTGACAC
GCATTATCCTCGCGGTCTTCCGCAATCTGATCGAGAAGCCGGAGGATTCA
TCGGTGGCCAAGGACCATTGCATCGCCATGGTCCAGTGCAAGGTGCTGAA
GCAGCTATCCATCCTGGAGCAGCGTCGCTTCGACGACGAGGACATTACCG
CCGACGTAGAGTACCTGAGCGAGAAGCTCCAGAATTCGGTGCAAGACTTG
AGCTCCTTTGATGAGTACGCCACAGAGGTGCGCAGCGGTCGCTTGGAATG
GTCGCCTGTGCACAAGTCGGCCAAGTTCTGGCGCGAGAATGCCCAGCGCC
TAAACGAAAAGAACTACGAGTTGCTGCGCATCCTCGTCCACCTCCTGGAA
ACCTCAAAAGATGCCATCATCCTTTCCGTCGCCTGCTTCGACATCGGGGA
GTATGTGCGCCACTATCCCCGCGGCAAGCACGTCTTGGAACAACTCGGAG
GCAAGCAGATCGTGATGCAGCATCTTGGCCACGAGGATCCCAATGTGCGA
TACGAAGCCCTGCTGGCTGTGCAAAAGCTGATGGTACACAATTGGGAATA
CCTGGGCAAGCAGCTGGAGAAGGAAAACGAGAACCAGAAACAAGGTGCCG
CCCCCATCGCTGGCAAGGCCTAGAAGCTTTCTAGACCAT
BS09267.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 1407 | CG17332-PE | 1..1407 | 17..1423 | 7035 | 100 | Plus |
| VhaSFD-RA | 1407 | CG17332-PA | 1..1407 | 17..1423 | 7035 | 100 | Plus |
| VhaSFD-RD | 1326 | CG17332-PD | 1..1319 | 17..1335 | 6595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-RE | 2503 | CG17332-RE | 161..1567 | 17..1423 | 7035 | 100 | Plus |
| VhaSFD-RA | 2154 | CG17332-RA | 161..1567 | 17..1423 | 7035 | 100 | Plus |
| VhaSFD-RD | 2247 | CG17332-RD | 161..1479 | 17..1335 | 6595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16724232..16724796 | 1230..666 | 2825 | 100 | Minus |
| 2L | 23513712 | 2L | 16727010..16727489 | 532..53 | 2400 | 100 | Minus |
| 2L | 23513712 | 2L | 16724856..16724993 | 670..533 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 16724057..16724171 | 1345..1231 | 575 | 100 | Minus |
| 2L | 23513712 | 2L | 16723819..16723898 | 1423..1344 | 400 | 100 | Minus |
| 2L | 23513712 | 2L | 16727630..16727666 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:10:41 has no hits.
BS09267.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:34 Download gff for
BS09267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 1..1407 | 17..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:01 Download gff for
BS09267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 155..1566 | 12..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:12 Download gff for
BS09267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 161..1567 | 17..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:34 Download gff for
BS09267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 155..1566 | 12..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:58 Download gff for
BS09267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaSFD-RA | 161..1567 | 17..1423 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:58 Download gff for
BS09267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16724058..16724171 | 1231..1344 | 100 | <- | Minus |
| 2L | 16723819..16723897 | 1345..1423 | 100 | <- | Minus |
| 2L | 16724232..16724794 | 668..1230 | 100 | <- | Minus |
| 2L | 16724859..16724993 | 533..667 | 100 | <- | Minus |
| 2L | 16727010..16727488 | 54..532 | 100 | <- | Minus |
| 2L | 16727630..16727666 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:12 Download gff for
BS09267.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16723819..16723897 | 1345..1423 | 100 | <- | Minus |
| arm_2L | 16724058..16724171 | 1231..1344 | 100 | <- | Minus |
| arm_2L | 16724859..16724993 | 533..667 | 100 | <- | Minus |
| arm_2L | 16724232..16724794 | 668..1230 | 100 | <- | Minus |
| arm_2L | 16727010..16727488 | 54..532 | 100 | <- | Minus |
| arm_2L | 16727630..16727666 | 17..53 | 100 | | Minus |
BS09267.pep Sequence
Translation from 16 to 1422
> BS09267.pep
MTTALYLPEENIDMIAATSVLQQQAADIRTRTINWASYMQSQMISEEDYK
AISALDKSRASFLAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDDLLQE
DRSRVDLFHDTAGKLKQCIWGPFLNLLNRQDGFIVNMSSRILAKFACWGH
ETMPKSDLNFYLQFLKDQLASNNNEYIQSVARCLQMMLRVDEYRFAFVGV
DGISTLIRILSTRVNFQVQYQLIFCLWVLTFNPLLAAKMNKFSVIPILAD
ILSDCAKEKVTRIILAVFRNLIEKPEDSSVAKDHCIAMVQCKVLKQLSIL
EQRRFDDEDITADVEYLSEKLQNSVQDLSSFDEYATEVRSGRLEWSPVHK
SAKFWRENAQRLNEKNYELLRILVHLLETSKDAIILSVACFDIGEYVRHY
PRGKHVLEQLGGKQIVMQHLGHEDPNVRYEALLAVQKLMVHNWEYLGKQL
EKENENQKQGAAPIAGKA*
BS09267.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaSFD-PE | 468 | CG17332-PE | 1..468 | 1..468 | 2390 | 100 | Plus |
| VhaSFD-PA | 468 | CG17332-PA | 1..468 | 1..468 | 2390 | 100 | Plus |
| VhaSFD-PD | 441 | CG17332-PD | 1..440 | 1..440 | 2238 | 100 | Plus |
| VhaSFD-PB | 542 | CG17332-PB | 120..542 | 35..468 | 1520 | 73 | Plus |
| VhaSFD-PB | 542 | CG17332-PB | 1..182 | 1..182 | 887 | 96.2 | Plus |
