Clone Sequence Records
BS09270.3prime Sequence
861 bp (741 high quality bases) assembled on 2006-01-29
> BS09270.3prime
ATGGTCTAGAATGCTTTCAGTTCGATTCGGGCTTGACATTGCGTCGCAGG
ATGGCCGCTGCGAGGTCCTGCTTCATGGCCGCCTGCTGGCGCTGATCGGC
CAGTGATTGTGTGCTCCTTAGTCCGTTCACGATGTCCTTGGTCTTGCCAA
AGTAGATCTCGTTCAGGGTGTTCCTGATCTTGTTCTCCATCTCCTCGACC
ATCTTGCCAATGTTGGCGATGTGCGGCGACGACTCGCTGACGTTGGCGTC
CTGCTCCTGCTGCCGGGTGAGGGATCCGCCCAGATTCATGGTTCCCGAAC
CCTGTTTGTTGGTCTGCAGCCAGAGCATTGCCGTGGAGGTGAGCTTGTAG
TGGGCCGTCCTGCCGGTGGTCTTCTCCTGTACCTCGACCACATGGATGGA
GTCCCAGCAGCCGCGGATCATCTTGCTGCCATCTCCCGCCTTTTTGATCA
GTATAACGGCGGCAAACCCGTGATCCAGATCCCATAGGTAGACGGAGGAG
ACGCCTCCCTCGTAGTACATCTCCCTGTACTGATCGAAGGCATAGTTCGC
CTCGATTTCCAGTTTGCGCAGTCGTTCCGAGGGCATTTGGCCATCCTCCA
GCGGCGGATAGTAGGAGTTCGACCAGGGCGATCTGTAGGAGTCCCCATCC
CGGTTATAGTCGCACAGCAGATAGTCCTTGCCGTGCTCCTTGTCCTTGGC
GATCTTCAGCGGCTGGTCCACGGAGGAGAGCAAGTCCTCGCAGAGATCCG
GTGCCAAGTCTATCAGATCAATAAGGTTCTTCTCGATCTGCTGGGGCGGC
AGCCTCCGCATCAGATCCAAAGCACAGTCCATCTGCATTTCCGACATGAC
GACTGATAACT
BS09270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17158-PA | 831 | cpb-RA | 1..831 | 847..17 | 4130 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 1713 | CG17158-RB | 148..978 | 847..17 | 4140 | 99.9 | Minus |
| cpb-RA | 1591 | CG17158-RA | 211..1041 | 847..17 | 4140 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1705399..1706227 | 845..17 | 4130 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:04:47 has no hits.
BS09270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:30 Download gff for
BS09270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-PA | 1..831 | 17..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:35 Download gff for
BS09270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17158-PA | 1..831 | 17..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:25 Download gff for
BS09270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1041 | 17..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:27 Download gff for
BS09270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1041 | 17..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:27 Download gff for
BS09270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1705391..1706227 | 17..856 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:25 Download gff for
BS09270.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1705391..1706227 | 17..856 | 99 | | Minus |
BS09270.5prime Sequence
820 bp (777 high quality bases) assembled on 2006-01-29
> BS09270.5prime
GAAGTTATCAGTCGTCATGTCGGAAATGCAGATGGACTGTGCTTTGGATC
TGATGCGGAGGCTGCCGCCCCAGCAGATCGAGAAGAACCTTATTGATCTG
ATAGACTTGGCACCGGATCTCTGCGAGGACTTGCTCTCCTCCGTGGACCA
GCCGCTGAAGATCGCCAAGGACAAGGAGCACGGCAAGGACTATCTGCTGT
GCGACTATAACCGGGATGGGGACTCCTACAGATCGCCCTGGTCGAACTCC
TACTATCCGCCGCTGGAGGATGGCCAAATGCCCTCGGAACGACTGCGCAA
ACTGGAAATCGAGGCGAACTATGCCTTCGATCAGTACAGGGAGATGTACT
ACGAGGGAGGCGTCTCCTCCGTCTACCTATGGGATCTGGATCACGGGTTT
GCCGCCGTTATACTGATCAAAAAGGCGGGAGATGGCAGCAAGATGATCCG
CGGCTGCTGGGACTCCATCCATGTGGTCGAGGTACAGGAGAAGACCACCG
GCAGGACGGCCCACTACAAGCTCACCTCCACGGCAATGCTCTGGCTGCAG
ACCAACAAACAGGGTTCGGGAACCATGAATCTGGGCGGATCCCTCACCCG
GCAGCAGGAGCAGGACGCCAACGTCAGCGAGTCGTCGCCGCACATCGCCA
ACATTGGCAAGATGGTCGAGGAGATGGAGAACAAGATCAGGAACACCCTG
AACGAGATCTACTTTGGCAAGACCAAGGACATCGTGAACGGACTAAGGAG
CACACAATCACTGGCCGATCAGCGCCAGCAGGCGGCCATGAAGCAGGACC
TCGCAGCGGCCATCCTGCGA
BS09270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17158-PA | 831 | cpb-RA | 1..804 | 17..820 | 3995 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 1713 | CG17158-RB | 148..951 | 17..820 | 4005 | 99.9 | Plus |
| cpb-RA | 1591 | CG17158-RA | 211..1014 | 17..820 | 4005 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1705399..1706200 | 19..820 | 3995 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:13:41 has no hits.
BS09270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:31 Download gff for
BS09270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:36 Download gff for
BS09270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17158-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:11:35 Download gff for
BS09270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1013 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:09:02 Download gff for
BS09270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1013 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:02 Download gff for
BS09270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1705391..1706199 | 8..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:11:35 Download gff for
BS09270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1705391..1706199 | 8..819 | 99 | | Plus |
BS09270.complete Sequence
863 bp assembled on 2008-08-15
GenBank Submission: FJ636388
> BS09270.complete
GAAGTTATCAGTCGTCATGTCGGAAATGCAGATGGACTGTGCTTTGGATC
TGATGCGGAGGCTGCCGCCCCAGCAGATCGAGAAGAACCTTATTGATCTG
ATAGACTTGGCACCGGATCTCTGCGAGGACTTGCTCTCCTCCGTGGACCA
GCCGCTGAAGATCGCCAAGGACAAGGAGCACGGCAAGGACTATCTGCTGT
GCGACTATAACCGGGATGGGGACTCCTACAGATCGCCCTGGTCGAACTCC
TACTATCCGCCGCTGGAGGATGGCCAAATGCCCTCGGAACGACTGCGCAA
ACTGGAAATCGAGGCGAACTATGCCTTCGATCAGTACAGGGAGATGTACT
ACGAGGGAGGCGTCTCCTCCGTCTACCTATGGGATCTGGATCACGGGTTT
GCCGCCGTTATACTGATCAAAAAGGCGGGAGATGGCAGCAAGATGATCCG
CGGCTGCTGGGACTCCATCCATGTGGTCGAGGTACAGGAGAAGACCACCG
GCAGGACGGCCCACTACAAGCTCACCTCCACGGCAATGCTCTGGCTGCAG
ACCAACAAACAGGGTTCGGGAACCATGAATCTGGGCGGATCCCTCACCCG
GCAGCAGGAGCAGGACGCCAACGTCAGCGAGTCGTCGCCGCACATCGCCA
ACATTGGCAAGATGGTCGAGGAGATGGAGAACAAGATCAGGAACACCCTG
AACGAGATCTACTTTGGCAAGACCAAGGACATCGTGAACGGACTAAGGAG
CACACAATCACTGGCCGATCAGCGCCAGCAGGCGGCCATGAAGCAGGACC
TCGCAGCGGCCATCCTGCGACGCAATGTCAAGCCCGAATCGAACTGAAAG
CATTCTAGACCAT
BS09270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 831 | CG17158-PB | 1..831 | 17..847 | 4140 | 99.9 | Plus |
| cpb-RA | 831 | CG17158-PA | 1..831 | 17..847 | 4140 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 1713 | CG17158-RB | 148..978 | 17..847 | 4140 | 99.9 | Plus |
| cpb-RA | 1591 | CG17158-RA | 211..1041 | 17..847 | 4140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1705399..1706227 | 19..847 | 4130 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:16 has no hits.
BS09270.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:15 Download gff for
BS09270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 209..1039 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:35 Download gff for
BS09270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1040 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:20 Download gff for
BS09270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 209..1038 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:57 Download gff for
BS09270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1040 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:57 Download gff for
BS09270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1705398..1706226 | 17..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:35 Download gff for
BS09270.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1705398..1706226 | 17..846 | 99 | | Plus |
BS09270.pep Sequence
Translation from 16 to 846
> BS09270.pep
MSEMQMDCALDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIA
KDKEHGKDYLLCDYNRDGDSYRSPWSNSYYPPLEDGQMPSERLRKLEIEA
NYAFDQYREMYYEGGVSSVYLWDLDHGFAAVILIKKAGDGSKMIRGCWDS
IHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQD
ANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNGLRSTQSLA
DQRQQAAMKQDLAAAILRRNVKPESN*
BS09270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-PB | 276 | CG17158-PB | 1..276 | 1..276 | 1442 | 100 | Plus |
| cpb-PA | 276 | CG17158-PA | 1..276 | 1..276 | 1442 | 100 | Plus |
