Clone Sequence Records
BS09272.complete Sequence
2633 bp assembled on 2009-12-07
GenBank Submission: KX800683
> BS09272.complete
GAAGTTATCAGTCGACATGCTGTACTGCCCGCCCAACGTGACCCTCAGCG
AGGTGTGGACGCAGCATGGCATCTCGCATTGCTTCATGGACACCGTGGGA
CCGGCGGTATACGGTGGATTCCTTCTGCTCTTCGGCAGCATTCAGTTGCT
GATGTACCGGAAGTATGCCACCAGGATTACGGATCCCACGCAAATCTCCA
AGTCACGACTGTTCGCGATGCAACTCTTTCTGTTGCTCCTGCTCCCGGTT
TTGGCTCTATTGCGGTTTCTGATGAATGCACGTATTTATCCAGATAGTGC
GGTGTACGGCTATATGATCTTCTCCACTTGCGTTGTGTGCTTCTCCTACC
CGTTCAGCATCTGTTTGATACTCAAGGAGCGCTACTACCAGCTGCCCTCA
ATGCCCACCCGAGGACATGGACTTGTTCTATTGCTATTCTGGACGTTGGC
TTTCATTAACGAGTCGCTGGCCTTCATAAATTTGCGCCACGAGGACTGGT
GGTTCCACCTAAAAACGAACAAGGATCAAATTGAGATGGGCTTGTTTGTC
ACCCGGTTCCTGTGCTCCCTGCTCATCTTCGTTTTGGGTCTGAAAGCTCC
TGGCATCATGGCCCCGTACAATCCACATCAGCGGCTGGACAATGATACCG
CCAACGAATCGCAGGGAAACGTGCAGACAGGATCTGCTTTCAGGAACGGA
TGGCGCAAGCTGCGCACCGTCTTTCCGTACCTCTGGCCTAAAAAGAATAT
TGCTCTGCAGATAGCCGTCATCGTTTGCATTATACTGCTGCTTGCCGGTC
GAGTCATAAAGCTGTTTTTGCCGATTTATCGCAAGAAGTTGGTTGACAGT
CTTACCATTGCACCGATCGTCTTTCGCTGGGACTTTGTGCTGATCTATGT
GGCATTGTCCTTCCTCCAGGGTGGCGGCACTGGTAGCATGGGATTATTTA
ATAACCTTCGCACCTTCCTCTGGATACGGGTTCAACAGTACACGACCCGG
GAGATCGAGATTGAGCTGTTCCGGCATCTGCACCAGCTTTCGCTTAGATG
GCACTTGCAACGCAAAACGGGAGAGGTGTTGCGTGTCATGGATCGCGGCA
CGGACTCGATCAACAACCTCCTCAACTATATTGTCTTCTCGATCGCACCA
ACCATTCTCGATCTACTCGTTGCCGTGGCATACTTTGTTTACGCCTTCAA
TTGGTGGTTTGGCCTAATCGTCTTCCTCACCATGTTCCTGTATATAGCCT
CTACCATTGCAATCACTGAATGGAGAACCAAGTACCAGAGGAGAATGAAC
CTGGCGGACAATGAGCAGCGAGCTCGCAGCGTGGACTCCCTTCTCAATTT
CGAAACAGTCAAGTACTACGGAGCGGAGCACTACGAGGTGGATTGCTACA
GGGAGGCCATTCTCAAGTACCAAAAGGAAGAGTTCCTCTCAATGCTGACA
CTCAACATGCTGAACACAGCCCAGAATATTATTTTGTGCTTGGGCCTACT
GGCCGGATCGCTGCTCTGTGTATACTTGGTAGTTCACCATCAAACCCTCA
CCGTGGGCGATTTTGTGCTCTTCTCCACCTATCTGATGGAATTGTACATG
CCACTGAACTGGTTCGGCACCTATTACCGAGCCATACAGAAGAACTTCGT
GGACATGGAGAACATGTTCGATCTGCTGAAAGAGGAGGAAGAGATTGTGG
ATGCCCCAGGCTGTTCGCCCCTTCTAACTGCCGGCGGTGGCATTGAGTTC
TCAAACGTGACCTTTGGCTATTCACCGGAGAAGATAGTGCTGCGCAATGT
GAGCTTCACAGTTCCGGCCGGTAAGACGGTAGCGATTGTTGGACCCTCTG
GAGCCGGTAAGAGCACCATCATGCGGCTGCTTTTCCGCTTTTACGATGTG
CAGACTGGTGCTATCCTGATTGACGGACAAAACATCAAGCTTGTGCAGCA
GCAGAGTCTGCGAAAGGCCATTGGAGTGGTGCCCCAGGATACAGTTCTCT
TTAACAACACCATCTTCTACAACATTGAATATGCCAAGTTGGGCGCTTCG
GACGAAGCTGTCTATGAGGCTGCTCGCGCCGCCGACATTCACGAAAGGAT
TCTCGGCTTTCCGGAGAAATATGAGACAAAGGTGGGCGAACGAGGTCTGC
GGCTCAGTGGAGGTGAAAAGCAACGCGTAGCCATCGCCAGAACGCTTCTT
AAGGCGCCCATTATTGTGCTCCTGGATGAAGCCACCTCAGCTTTGGACAC
CCACACAGAACGCAATATTCAGGCTGCTTTGGCCAGGGTGTGCGCAAATC
GTACCACCATCATTGTTGCCCATCGTCTTTCCACCATCATCCATGCGGAC
GAGATTCTGGTCCTGCAGCAGGGAAGCATAGCGGAGCGTGGGCGACACGA
AGAGCTTGTGCTGCGCGAAGATGGCATCTACGCGGACATGTGGCAACAGC
AACTCAAGAATCTAGATGCAGAACAGAGTGGTGGTTCTGATAACGGAGAC
GCTAGTGCAGAATCGGGATCGGAGAAACGCAGGGCAGGAGGAGCAGGAGG
ACCAAGTGGTACTGGAACGGGTGGTGCCCACTTCAGGGCAGGACATGCTC
ATGGGGGAGCACGCTAGAAGCTTTCTAGACCAT
BS09272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt-1-RA | 2601 | CG4225-PA | 1..2601 | 17..2617 | 12975 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt-1-RA | 2986 | CG4225-RA | 157..2758 | 16..2617 | 12980 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15854096..15855467 | 2617..1246 | 6830 | 99.9 | Minus |
| 3R | 32079331 | 3R | 15855529..15855934 | 1247..842 | 2030 | 100 | Minus |
| 3R | 32079331 | 3R | 15855997..15856322 | 842..517 | 1630 | 100 | Minus |
| 3R | 32079331 | 3R | 15856638..15856938 | 316..16 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 15856382..15856583 | 517..316 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:18:07 has no hits.
BS09272.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:02 Download gff for
BS09272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4225-RA | 160..2760 | 17..2617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:59 Download gff for
BS09272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt-1-RA | 160..2760 | 17..2617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:01 Download gff for
BS09272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4225-RA | 160..2760 | 17..2617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:30 Download gff for
BS09272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt-1-RA | 158..2758 | 17..2617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:30 Download gff for
BS09272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15856383..15856582 | 317..516 | 100 | <- | Minus |
| 3R | 15856638..15856937 | 17..316 | 100 | | Minus |
| 3R | 15855997..15856322 | 517..842 | 100 | <- | Minus |
| 3R | 15854096..15855465 | 1248..2617 | 99 | <- | Minus |
| 3R | 15855529..15855933 | 843..1247 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:59 Download gff for
BS09272.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11679818..11681187 | 1248..2617 | 99 | <- | Minus |
| arm_3R | 11681251..11681655 | 843..1247 | 100 | <- | Minus |
| arm_3R | 11681719..11682044 | 517..842 | 100 | <- | Minus |
| arm_3R | 11682105..11682304 | 317..516 | 100 | <- | Minus |
| arm_3R | 11682360..11682659 | 17..316 | 100 | | Minus |
BS09272.3prime Sequence
941 bp (784 high quality bases) assembled on 2006-01-29
> BS09272.3prime
ATGGTCTAGAAAGCTTCTAGCGTGCTCCCCCATGAGCATGTCCTGCCCTG
AAGTGGGCACCACCCGTTCCAGTACCACTTGGTCCTCCTGCTCCTCCTGC
CCTGCGTTTCTCCGATCCCGATTCTGCACTAGCGTCTCCGTTATCAGAAC
CACCACTCTGTTCTGCATCTAGATTCTTGAGTTGCTGTTGCCACATGTCC
GCGTAGATGCCATCTTCGCGCAGCACAAGCTCTTCGTGTCGCCCACGCTC
CGCTATGCTTCCCTGCTGCAGGACCAGAATCTCGTCCGCATGGATGATGG
TGGAAAGACGATGGGCAACAATGATGGTGGTACGATTTGCGCACACCCTG
GCCAAAGCAGCCTGAATATTGCGTTCTGTGTGGGTGTCCAAAGCTGAGGT
GGCTTCATCCAGGAGCACAATAATGGGCGCCTTAAGAAGCGTTCTGGCGA
TGGCTACGCGTTGCTTTTCACCTCCACTGAGCCGCAGACCTCGTTCGCCC
ACCTTTGTCTCATATTTCTCCGGAAAGCCGAGAATCCTTTCGTGAATGTC
GGCGGCGCGAGCAGCCTCATAGACAGCTTCGTCCGAAGCGCCCAACTTGG
CATATTCAATGTTGTAGAAGATGGTGTTGTTAAAGAGAACTGTATCCTGG
GGCACCACTCCNATGGCCTTTCGCAGACTCTGCTGCTGCACAAGCTTGAT
GTTTTGTCCGTCAATCAGGATAGCACCAGTCTGCACATCGTANAAGCGGA
AAAGCAGCCGCATGATGGTGCTCTTACCGGCTCCAGAGGGTCCAACAATC
GCTACCGTCTTACCGGCCGGAACTGTGAAGCTCACATTGCGCAGCACTAT
CTTCTCCGGTGAATAGCCAAAGGTCACGTTTGAGAACTCAATGCCACCGC
CGGCAGTTAGAAAGGGGCGAACAGCCTGGGGGCATCACAAT
BS09272.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4225-PA | 2601 | CG4225-RA | 1706..2601 | 912..17 | 4417 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt-1-RA | 2986 | CG4225-RA | 1835..2758 | 941..17 | 4518 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15854096..15855009 | 17..931 | 4488 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:10:13 has no hits.
BS09272.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:32 Download gff for
BS09272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4225-PA | 1678..2601 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:38 Download gff for
BS09272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4225-PA | 1678..2601 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:51:25 Download gff for
BS09272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt-1-RA | 1837..2764 | 11..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:29:41 Download gff for
BS09272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt-1-RA | 1835..2762 | 11..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:29:41 Download gff for
BS09272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15854092..15855019 | 11..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:51:25 Download gff for
BS09272.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11679814..11680741 | 11..941 | 99 | | Plus |
BS09272.5prime Sequence
912 bp (804 high quality bases) assembled on 2006-01-29
> BS09272.5prime
GAAGTTATCAGTCGACATGCTGTACTGCCCGCCCAACGTGACCCTCAGCG
AGGTGTGGACGCAGCATGGCATCTCGCATTGCTTCATGGACACCGTGGGA
CCGGCGGTATACGGTGGATTCCTTCTGCTCTTCGGCAGCATTCAGTTGCT
GATGTACCGGAAGTATGCCACCAGGATTACGGATCCCACGCAAATCTCCA
AGTCACGACTGTTCGCGATGCAACTCTTTCTGTTGCTCCTGCTCCCGGTT
TTGGCTCTATTGCGGTTTCTGATGAATGCACGTATTTATCCAGATAGTGC
GGTGTACGGCTATATGATCTTCTCCACTTGCGTTGTGTGCTTCTCCTACC
CGTTCAGCATCTGTTTGATACTCAAGGAGCGCTACTACCAGCTGCCCTCA
ATGCCCACCCGAGGACATGGACTTGTTCTATTGCTATTCTGGACGTTGGC
TTTCATTAACGAGTCGCTGGCCTTCATAAATTTGCGCCACGAGGACTGGT
GGTTCCACCTAAAAACGAACAAGGATCAAATTGAGATGGGCTTGTTTGTC
ACCCGGTTCCTGTGCTCCCTGCTCATCTTCGTTTTGGGTCTGAAAGCTCC
TGGCATCATGGCCCCGTACAATCCACATCAGCGGCTGGACAATGATACCG
CCAACGAATCGCAGGGAAACGTGCAGACAGGATCTGCTTTCAGGAACGGA
TGGCGCANGCTGCGCACCGTCTTTCCGTACCTCTGGCCTAAAAAGAATAT
TGCTCTGCAGATAGCCGTCATCGTTTGCATTATACTGCTGCTTGCCGGTC
GAGTCATAAAGCTGTTTTTGCCGATTTATCGCAAGAAGTTGGTTGACAGT
CTTACCATTGCACCGATCGTCTTTCGCTGGGACTTTGTGCTGATCTATGT
GGGCATGTCCTT
BS09272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4225-PA | 2601 | CG4225-RA | 1..886 | 17..902 | 4411 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt-1-RA | 2986 | CG4225-RA | 157..1053 | 16..912 | 4429 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15855997..15856322 | 842..517 | 1619 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15856638..15856938 | 316..16 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 15856382..15856583 | 517..316 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 15855864..15855934 | 912..842 | 310 | 95.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:11:15 has no hits.
BS09272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:35 Download gff for
BS09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4225-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:40 Download gff for
BS09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4225-PA | 1..896 | 17..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:06:26 Download gff for
BS09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt-1-RA | 155..1055 | 8..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:22 Download gff for
BS09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmt-1-RA | 153..1053 | 8..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:22 Download gff for
BS09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15855864..15855933 | 843..912 | 97 | <- | Minus |
| 3R | 15855997..15856322 | 517..842 | 99 | <- | Minus |
| 3R | 15856383..15856582 | 317..516 | 100 | <- | Minus |
| 3R | 15856638..15856942 | 8..316 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:06:26 Download gff for
BS09272.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11681586..11681655 | 843..912 | 97 | <- | Minus |
| arm_3R | 11681719..11682044 | 517..842 | 99 | <- | Minus |
| arm_3R | 11682105..11682304 | 317..516 | 100 | <- | Minus |
| arm_3R | 11682360..11682664 | 8..316 | 98 | | Minus |
BS09272.pep Sequence
Translation from 16 to 2616
> BS09272.pep
MLYCPPNVTLSEVWTQHGISHCFMDTVGPAVYGGFLLLFGSIQLLMYRKY
ATRITDPTQISKSRLFAMQLFLLLLLPVLALLRFLMNARIYPDSAVYGYM
IFSTCVVCFSYPFSICLILKERYYQLPSMPTRGHGLVLLLFWTLAFINES
LAFINLRHEDWWFHLKTNKDQIEMGLFVTRFLCSLLIFVLGLKAPGIMAP
YNPHQRLDNDTANESQGNVQTGSAFRNGWRKLRTVFPYLWPKKNIALQIA
VIVCIILLLAGRVIKLFLPIYRKKLVDSLTIAPIVFRWDFVLIYVALSFL
QGGGTGSMGLFNNLRTFLWIRVQQYTTREIEIELFRHLHQLSLRWHLQRK
TGEVLRVMDRGTDSINNLLNYIVFSIAPTILDLLVAVAYFVYAFNWWFGL
IVFLTMFLYIASTIAITEWRTKYQRRMNLADNEQRARSVDSLLNFETVKY
YGAEHYEVDCYREAILKYQKEEFLSMLTLNMLNTAQNIILCLGLLAGSLL
CVYLVVHHQTLTVGDFVLFSTYLMELYMPLNWFGTYYRAIQKNFVDMENM
FDLLKEEEEIVDAPGCSPLLTAGGGIEFSNVTFGYSPEKIVLRNVSFTVP
AGKTVAIVGPSGAGKSTIMRLLFRFYDVQTGAILIDGQNIKLVQQQSLRK
AIGVVPQDTVLFNNTIFYNIEYAKLGASDEAVYEAARAADIHERILGFPE
KYETKVGERGLRLSGGEKQRVAIARTLLKAPIIVLLDEATSALDTHTERN
IQAALARVCANRTTIIVAHRLSTIIHADEILVLQQGSIAERGRHEELVLR
EDGIYADMWQQQLKNLDAEQSGGSDNGDASAESGSEKRRAGGAGGPSGTG
TGGAHFRAGHAHGGAR*
BS09272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmt-1-PA | 866 | CG4225-PA | 1..866 | 1..866 | 4486 | 100 | Plus |
| ABCB7-PB | 709 | CG7955-PB | 105..691 | 232..817 | 1183 | 42.8 | Plus |
| ABCB7-PA | 743 | CG7955-PA | 139..725 | 232..817 | 1183 | 42.8 | Plus |
| Mdr50-PA | 1313 | CG8523-PA | 179..681 | 330..834 | 570 | 32.8 | Plus |
| CG1824-PA | 761 | CG1824-PA | 111..708 | 221..820 | 557 | 29.1 | Plus |
| Mdr50-PA | 1313 | CG8523-PA | 846..1309 | 351..812 | 547 | 32.4 | Plus |
