Clone BS09278 Report

Search the DGRC for BS09278

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptDnaJ-1-RA
Protein status:BS09278.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09278.3prime Sequence

803 bp (786 high quality bases) assembled on 2006-01-29

> BS09278.3prime
ATGGTCTAGAAAGCTTCTAGTTGGGCAGCAGCTCGGACAGCTGATTCTGC
AGACTGGGTGCCAGTGTGTCGGGAAACTTAATGTCGAAGGAGACGATCAG
ATCGCCGCGCCTCGATGGCTCCTTGGGCACCGGCAGACCCAGTCCGTTGA
TCCGGCGCGTTGTGGTGGGCTTGATGATCTCGTGGTTCGGATTCACCTGT
ATCCTGCTGCCCTGCAGCGTGGGCACACTAACCAGTGCTCCGCACAAGGC
CTGCTTCAGACTGATCTGGGCTGTATACTTTAGATCGATTCCCTCGCGTT
TGAACAGCGAATGCGGTTTGTCGCGAATGATGAAGACGATGTCAGCTGGC
GTCTTGTTTGGCGCCGAATCACCCTCTTGGGGGAAGGTAATCTTGGTACC
GGCCTTCCAGCCCGGCTTCACTGTGATCCTCAGCACCTTCTCCTCCTTGT
ACGGCCCATTGCTTCCGGTGGCCATGCGTGAGATTTTCATCTTCTTGATG
CATCCCTTGTCCACTTCCTCCAGCGACACGAACAGATCATGCTCGATGGG
CGGATCCTGCTGGCGCTTGCGACTGGGTGCCTGGGCATTAAAGGCAAACA
TATCGTCGCCGCCAATGTTCCAGAAGATCTCGTTGGTATTGCCGCCCTGA
CCGCCACTAAACATGTTATCGCCGCCGGTAAAGAACGCGCCAAACGGATC
CGACGATCCAAAGAACTGGGCAAATGTGGCCCTCGGATCGCCGTGGAACT
GGTAAGTGTACGCTCCCGGCTGACCGCCGCCATCTGGTCCCGGCTGTCCG
CCC

BS09278.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10578-PA 1005 DnaJ-1-RA 219..1005 803..17 3935 100 Minus
CG10578-PB 1005 DnaJ-1-RB 219..1005 803..17 3935 100 Minus
CG5001-PA 1053 CG5001-RA 268..311 751..708 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
DnaJ-1-RA 1916 CG10578-RA 570..1356 803..17 3935 100 Minus
DnaJ-1-RB 2161 CG10578-RB 815..1601 803..17 3935 100 Minus
CG5001-RD 1755 CG5001-RD 850..1132 561..282 200 72.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5750589..5751375 17..803 3935 100 Plus
2L 23513712 2L 1192427..1192594 449..282 195 74.4 Minus
Blast to na_te.dros performed on 2015-02-12 10:41:33 has no hits.

BS09278.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:45 Download gff for BS09278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10578-PB 219..1005 17..803 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:50 Download gff for BS09278.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10578-PB 219..1005 17..803 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:21:55 Download gff for BS09278.3prime
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 815..1604 12..803 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:00 Download gff for BS09278.3prime
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 815..1604 12..803 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:00 Download gff for BS09278.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5750586..5751375 12..803 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:21:55 Download gff for BS09278.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5743686..5744475 12..803 99   Plus

BS09278.5prime Sequence

886 bp (830 high quality bases) assembled on 2006-01-29

> BS09278.5prime
GAAGTTATCAGTCGACATGGGCAAAGACTTCTACAAGATTCTGGGCCTCG
AGCGCAAGGCCAGCGACGATGAGATCAAGAAGGCCTACCGCAAACTGGCA
CTCAAATACCATCCCGACAAGAACAAGAGCCCACAGGCGGAGGAGCGCTT
CAAGGAGATCGCCGAGGCGTACGAGGTGCTGTCGGACAAAAAGAAGCGCG
ACATCTTCGACAATTACGGTGAGGATGGATTGAAGGGCGGACAGCCGGGA
CCAGATGGCGGCGGTCAGCCGGGAGCGTACACTTACCAGTTCCACGGCGA
TCCGAGGGCCACATTTGCCCAGTTCTTTGGATCGTCGGATCCGTTTGGCG
CGTTCTTTACCGGCGGCGATAACATGTTTAGTGGCGGTCAGGGCGGCAAT
ACCAACGAGATCTTCTGGAACATTGGCGGCGACGATATGTTTGCCTTTAA
TGCCCAGGCACCCAGTCGCAAGCGCCAGCAGGATCCGCCCATCGAGCATG
ATCTGTTCGTGTCGCTGGAGGAAGTGGACAAGGGATGCATCAAGAAGATG
AAAATCTCACGCATGGCCACCGGAAGCAATGGGCCGTACAAGGAGGAGAA
GGTGCTGAGGATCACAGTGAAGCCGGGCTGGAAGGCCGGTACCAAGATTA
CCTTCCCCCAAGAGGGTGATTCGGCGCCAAACAAGACGCCAGCTGACATC
GTCTTCATCATTCGCGACAAACCGCATTCGCTGTTCAAACGCGAGGGAAT
CGATCTAAAGTATACAGCCCAGATCAGTCTGAAGCAGGCCTTGTGCGGAG
CACTGGTTAGTGTGCCCACGCTGCANGGCAGCAGGATACAGGTGAATCCG
AACCACGAGATCATCANGCCCACCACAACGCGCCGG

BS09278.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10578-PA 1005 DnaJ-1-RA 1..870 17..886 4312 99.7 Plus
CG10578-PB 1005 DnaJ-1-RB 1..870 17..886 4312 99.7 Plus
CG5001-PA 1053 CG5001-RA 268..311 287..330 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
DnaJ-1-RA 1916 CG10578-RA 352..1221 17..886 4328 99.8 Plus
DnaJ-1-RB 2161 CG10578-RB 597..1466 17..886 4328 99.8 Plus
CG5001-RD 1755 CG5001-RD 381..649 59..330 360 76.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5750724..5751593 886..17 4328 99.8 Minus
2L 23513712 2L 1191726..1191908 59..241 300 77.6 Plus
X 23542271 X 10478240..10478417 200..23 245 75.8 Minus
2L 23513712 2L 1192427..1192594 589..756 195 74.4 Plus
Blast to na_te.dros performed on 2015-02-10 02:00:37 has no hits.

BS09278.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:46 Download gff for BS09278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10578-PB 1..870 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:51 Download gff for BS09278.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10578-PB 1..870 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:27 Download gff for BS09278.5prime
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 586..1466 8..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:05:01 Download gff for BS09278.5prime
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 586..1466 8..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:05:01 Download gff for BS09278.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5750724..5751604 8..886 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:27 Download gff for BS09278.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5743824..5744704 8..886 99   Minus

BS09278.complete Sequence

1037 bp (1037 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636389

> BS09278.complete
GAAGTTATCAGTCGACATGGGCAAAGACTTCTACAAGATTCTGGGCCTCG
AGCGCAAGGCCAGCGACGATGAGATCAAGAAGGCCTACCGCAAACTGGCA
CTCAAATACCATCCCGACAAGAACAAGAGCCCACAGGCGGAGGAGCGCTT
CAAGGAGATCGCCGAGGCGTACGAGGTGCTGTCGGACAAAAAGAAGCGCG
ACATCTTCGACAATTACGGTGAGGATGGATTGAAGGGCGGACAGCCGGGA
CCAGATGGCGGCGGTCAGCCGGGAGCGTACACTTACCAGTTCCACGGCGA
TCCGAGGGCCACATTTGCCCAGTTCTTTGGATCGTCGGATCCGTTTGGCG
CGTTCTTTACCGGCGGCGATAACATGTTTAGTGGCGGTCAGGGCGGCAAT
ACCAACGAGATCTTCTGGAACATTGGCGGCGACGATATGTTTGCCTTTAA
TGCCCAGGCACCCAGTCGCAAGCGCCAGCAGGATCCGCCCATCGAGCATG
ATCTGTTCGTGTCGCTGGAGGAAGTGGACAAGGGATGCATCAAGAAGATG
AAAATCTCACGCATGGCCACCGGAAGCAATGGGCCGTACAAGGAGGAGAA
GGTGCTGAGGATCACAGTGAAGCCGGGCTGGAAGGCCGGTACCAAGATTA
CCTTCCCCCAAGAGGGTGATTCGGCGCCAAACAAGACGCCAGCTGACATC
GTCTTCATCATTCGCGACAAACCGCATTCGCTGTTCAAACGCGAGGGAAT
CGATCTAAAGTATACAGCCCAGATCAGTCTGAAGCAGGCCTTGTGCGGAG
CACTGGTTAGTGTGCCCACGCTGCAGGGCAGCAGGATACAGGTGAATCCG
AACCACGAGATCATCAAGCCCACCACAACGCGCCGGATCAACGGACTGGG
TCTGCCGGTGCCCAAGGAGCCATCGAGGCGCGGCGATCTGATCGTCTCCT
TCGACATTAAGTTTCCCGACACACTGGCACCCAGTCTGCAGAATCAGCTG
TCCGAGCTGCTGCCCAACTAGAAGCTTTCTAGACCAT

BS09278.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
DnaJ-1-RA 1005 CG10578-PA 1..1005 17..1021 5025 100 Plus
DnaJ-1-RB 1005 CG10578-PB 1..1005 17..1021 5025 100 Plus
CG5001-RD 1053 CG5001-PD 43..225 59..241 300 77.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
DnaJ-1-RA 1916 CG10578-RA 352..1356 17..1021 5025 100 Plus
DnaJ-1-RB 2161 CG10578-RB 597..1601 17..1021 5025 100 Plus
CG5001-RD 1755 CG5001-RD 381..563 59..241 300 77.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5750589..5751593 1021..17 5025 100 Minus
2L 23513712 2L 1191726..1191908 59..241 300 77.6 Plus
X 23542271 X 10478240..10478417 200..23 245 75.8 Minus
2L 23513712 2L 1192427..1192594 589..756 195 74.4 Plus
Blast to na_te.dros performed on 2014-11-27 23:32:00 has no hits.

BS09278.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:35 Download gff for BS09278.complete
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 1..1005 17..1021 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:03 Download gff for BS09278.complete
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 627..1645 8..1026 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:30:58 Download gff for BS09278.complete
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 597..1601 17..1021 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:35 Download gff for BS09278.complete
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 627..1645 8..1026 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:34 Download gff for BS09278.complete
Subject Subject Range Query Range Percent Splice Strand
DnaJ-1-RB 597..1601 17..1021 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:34 Download gff for BS09278.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5750589..5751593 17..1021 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:30:58 Download gff for BS09278.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5743689..5744693 17..1021 100   Minus

BS09278.pep Sequence

Translation from 16 to 1020

> BS09278.pep
MGKDFYKILGLERKASDDEIKKAYRKLALKYHPDKNKSPQAEERFKEIAE
AYEVLSDKKKRDIFDNYGEDGLKGGQPGPDGGGQPGAYTYQFHGDPRATF
AQFFGSSDPFGAFFTGGDNMFSGGQGGNTNEIFWNIGGDDMFAFNAQAPS
RKRQQDPPIEHDLFVSLEEVDKGCIKKMKISRMATGSNGPYKEEKVLRIT
VKPGWKAGTKITFPQEGDSAPNKTPADIVFIIRDKPHSLFKREGIDLKYT
AQISLKQALCGALVSVPTLQGSRIQVNPNHEIIKPTTTRRINGLGLPVPK
EPSRRGDLIVSFDIKFPDTLAPSLQNQLSELLPN*

BS09278.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
DnaJ-1-PA 334 CG10578-PA 1..334 1..334 1769 100 Plus
DnaJ-1-PB 334 CG10578-PB 1..334 1..334 1769 100 Plus
CG5001-PC 346 CG5001-PC 1..346 1..332 1038 57.3 Plus
CG5001-PD 350 CG5001-PD 1..350 1..332 1034 57 Plus
CG5001-PA 350 CG5001-PA 1..350 1..332 1034 57 Plus