Clone Sequence Records
BS09278.3prime Sequence
803 bp (786 high quality bases) assembled on 2006-01-29
> BS09278.3prime
ATGGTCTAGAAAGCTTCTAGTTGGGCAGCAGCTCGGACAGCTGATTCTGC
AGACTGGGTGCCAGTGTGTCGGGAAACTTAATGTCGAAGGAGACGATCAG
ATCGCCGCGCCTCGATGGCTCCTTGGGCACCGGCAGACCCAGTCCGTTGA
TCCGGCGCGTTGTGGTGGGCTTGATGATCTCGTGGTTCGGATTCACCTGT
ATCCTGCTGCCCTGCAGCGTGGGCACACTAACCAGTGCTCCGCACAAGGC
CTGCTTCAGACTGATCTGGGCTGTATACTTTAGATCGATTCCCTCGCGTT
TGAACAGCGAATGCGGTTTGTCGCGAATGATGAAGACGATGTCAGCTGGC
GTCTTGTTTGGCGCCGAATCACCCTCTTGGGGGAAGGTAATCTTGGTACC
GGCCTTCCAGCCCGGCTTCACTGTGATCCTCAGCACCTTCTCCTCCTTGT
ACGGCCCATTGCTTCCGGTGGCCATGCGTGAGATTTTCATCTTCTTGATG
CATCCCTTGTCCACTTCCTCCAGCGACACGAACAGATCATGCTCGATGGG
CGGATCCTGCTGGCGCTTGCGACTGGGTGCCTGGGCATTAAAGGCAAACA
TATCGTCGCCGCCAATGTTCCAGAAGATCTCGTTGGTATTGCCGCCCTGA
CCGCCACTAAACATGTTATCGCCGCCGGTAAAGAACGCGCCAAACGGATC
CGACGATCCAAAGAACTGGGCAAATGTGGCCCTCGGATCGCCGTGGAACT
GGTAAGTGTACGCTCCCGGCTGACCGCCGCCATCTGGTCCCGGCTGTCCG
CCC
BS09278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10578-PA | 1005 | DnaJ-1-RA | 219..1005 | 803..17 | 3935 | 100 | Minus |
CG10578-PB | 1005 | DnaJ-1-RB | 219..1005 | 803..17 | 3935 | 100 | Minus |
CG5001-PA | 1053 | CG5001-RA | 268..311 | 751..708 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DnaJ-1-RA | 1916 | CG10578-RA | 570..1356 | 803..17 | 3935 | 100 | Minus |
DnaJ-1-RB | 2161 | CG10578-RB | 815..1601 | 803..17 | 3935 | 100 | Minus |
CG5001-RD | 1755 | CG5001-RD | 850..1132 | 561..282 | 200 | 72.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5750589..5751375 | 17..803 | 3935 | 100 | Plus |
2L | 23513712 | 2L | 1192427..1192594 | 449..282 | 195 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:41:33 has no hits.
BS09278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:45 Download gff for
BS09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10578-PB | 219..1005 | 17..803 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:50 Download gff for
BS09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10578-PB | 219..1005 | 17..803 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:21:55 Download gff for
BS09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 815..1604 | 12..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:32:00 Download gff for
BS09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 815..1604 | 12..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:32:00 Download gff for
BS09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5750586..5751375 | 12..803 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:21:55 Download gff for
BS09278.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5743686..5744475 | 12..803 | 99 | | Plus |
BS09278.5prime Sequence
886 bp (830 high quality bases) assembled on 2006-01-29
> BS09278.5prime
GAAGTTATCAGTCGACATGGGCAAAGACTTCTACAAGATTCTGGGCCTCG
AGCGCAAGGCCAGCGACGATGAGATCAAGAAGGCCTACCGCAAACTGGCA
CTCAAATACCATCCCGACAAGAACAAGAGCCCACAGGCGGAGGAGCGCTT
CAAGGAGATCGCCGAGGCGTACGAGGTGCTGTCGGACAAAAAGAAGCGCG
ACATCTTCGACAATTACGGTGAGGATGGATTGAAGGGCGGACAGCCGGGA
CCAGATGGCGGCGGTCAGCCGGGAGCGTACACTTACCAGTTCCACGGCGA
TCCGAGGGCCACATTTGCCCAGTTCTTTGGATCGTCGGATCCGTTTGGCG
CGTTCTTTACCGGCGGCGATAACATGTTTAGTGGCGGTCAGGGCGGCAAT
ACCAACGAGATCTTCTGGAACATTGGCGGCGACGATATGTTTGCCTTTAA
TGCCCAGGCACCCAGTCGCAAGCGCCAGCAGGATCCGCCCATCGAGCATG
ATCTGTTCGTGTCGCTGGAGGAAGTGGACAAGGGATGCATCAAGAAGATG
AAAATCTCACGCATGGCCACCGGAAGCAATGGGCCGTACAAGGAGGAGAA
GGTGCTGAGGATCACAGTGAAGCCGGGCTGGAAGGCCGGTACCAAGATTA
CCTTCCCCCAAGAGGGTGATTCGGCGCCAAACAAGACGCCAGCTGACATC
GTCTTCATCATTCGCGACAAACCGCATTCGCTGTTCAAACGCGAGGGAAT
CGATCTAAAGTATACAGCCCAGATCAGTCTGAAGCAGGCCTTGTGCGGAG
CACTGGTTAGTGTGCCCACGCTGCANGGCAGCAGGATACAGGTGAATCCG
AACCACGAGATCATCANGCCCACCACAACGCGCCGG
BS09278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10578-PA | 1005 | DnaJ-1-RA | 1..870 | 17..886 | 4312 | 99.7 | Plus |
CG10578-PB | 1005 | DnaJ-1-RB | 1..870 | 17..886 | 4312 | 99.7 | Plus |
CG5001-PA | 1053 | CG5001-RA | 268..311 | 287..330 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DnaJ-1-RA | 1916 | CG10578-RA | 352..1221 | 17..886 | 4328 | 99.8 | Plus |
DnaJ-1-RB | 2161 | CG10578-RB | 597..1466 | 17..886 | 4328 | 99.8 | Plus |
CG5001-RD | 1755 | CG5001-RD | 381..649 | 59..330 | 360 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5750724..5751593 | 886..17 | 4328 | 99.8 | Minus |
2L | 23513712 | 2L | 1191726..1191908 | 59..241 | 300 | 77.6 | Plus |
X | 23542271 | X | 10478240..10478417 | 200..23 | 245 | 75.8 | Minus |
2L | 23513712 | 2L | 1192427..1192594 | 589..756 | 195 | 74.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:00:37 has no hits.
BS09278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:46 Download gff for
BS09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10578-PB | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:51 Download gff for
BS09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10578-PB | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:36:27 Download gff for
BS09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 586..1466 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:05:01 Download gff for
BS09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 586..1466 | 8..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:05:01 Download gff for
BS09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5750724..5751604 | 8..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:36:27 Download gff for
BS09278.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5743824..5744704 | 8..886 | 99 | | Minus |
BS09278.complete Sequence
1037 bp (1037 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636389
> BS09278.complete
GAAGTTATCAGTCGACATGGGCAAAGACTTCTACAAGATTCTGGGCCTCG
AGCGCAAGGCCAGCGACGATGAGATCAAGAAGGCCTACCGCAAACTGGCA
CTCAAATACCATCCCGACAAGAACAAGAGCCCACAGGCGGAGGAGCGCTT
CAAGGAGATCGCCGAGGCGTACGAGGTGCTGTCGGACAAAAAGAAGCGCG
ACATCTTCGACAATTACGGTGAGGATGGATTGAAGGGCGGACAGCCGGGA
CCAGATGGCGGCGGTCAGCCGGGAGCGTACACTTACCAGTTCCACGGCGA
TCCGAGGGCCACATTTGCCCAGTTCTTTGGATCGTCGGATCCGTTTGGCG
CGTTCTTTACCGGCGGCGATAACATGTTTAGTGGCGGTCAGGGCGGCAAT
ACCAACGAGATCTTCTGGAACATTGGCGGCGACGATATGTTTGCCTTTAA
TGCCCAGGCACCCAGTCGCAAGCGCCAGCAGGATCCGCCCATCGAGCATG
ATCTGTTCGTGTCGCTGGAGGAAGTGGACAAGGGATGCATCAAGAAGATG
AAAATCTCACGCATGGCCACCGGAAGCAATGGGCCGTACAAGGAGGAGAA
GGTGCTGAGGATCACAGTGAAGCCGGGCTGGAAGGCCGGTACCAAGATTA
CCTTCCCCCAAGAGGGTGATTCGGCGCCAAACAAGACGCCAGCTGACATC
GTCTTCATCATTCGCGACAAACCGCATTCGCTGTTCAAACGCGAGGGAAT
CGATCTAAAGTATACAGCCCAGATCAGTCTGAAGCAGGCCTTGTGCGGAG
CACTGGTTAGTGTGCCCACGCTGCAGGGCAGCAGGATACAGGTGAATCCG
AACCACGAGATCATCAAGCCCACCACAACGCGCCGGATCAACGGACTGGG
TCTGCCGGTGCCCAAGGAGCCATCGAGGCGCGGCGATCTGATCGTCTCCT
TCGACATTAAGTTTCCCGACACACTGGCACCCAGTCTGCAGAATCAGCTG
TCCGAGCTGCTGCCCAACTAGAAGCTTTCTAGACCAT
BS09278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DnaJ-1-RA | 1005 | CG10578-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
DnaJ-1-RB | 1005 | CG10578-PB | 1..1005 | 17..1021 | 5025 | 100 | Plus |
CG5001-RD | 1053 | CG5001-PD | 43..225 | 59..241 | 300 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DnaJ-1-RA | 1916 | CG10578-RA | 352..1356 | 17..1021 | 5025 | 100 | Plus |
DnaJ-1-RB | 2161 | CG10578-RB | 597..1601 | 17..1021 | 5025 | 100 | Plus |
CG5001-RD | 1755 | CG5001-RD | 381..563 | 59..241 | 300 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5750589..5751593 | 1021..17 | 5025 | 100 | Minus |
2L | 23513712 | 2L | 1191726..1191908 | 59..241 | 300 | 77.6 | Plus |
X | 23542271 | X | 10478240..10478417 | 200..23 | 245 | 75.8 | Minus |
2L | 23513712 | 2L | 1192427..1192594 | 589..756 | 195 | 74.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:32:00 has no hits.
BS09278.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:35 Download gff for
BS09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 1..1005 | 17..1021 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:03 Download gff for
BS09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 627..1645 | 8..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:30:58 Download gff for
BS09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 597..1601 | 17..1021 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:35 Download gff for
BS09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 627..1645 | 8..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:34 Download gff for
BS09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DnaJ-1-RB | 597..1601 | 17..1021 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:34 Download gff for
BS09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5750589..5751593 | 17..1021 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:30:58 Download gff for
BS09278.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5743689..5744693 | 17..1021 | 100 | | Minus |
BS09278.pep Sequence
Translation from 16 to 1020
> BS09278.pep
MGKDFYKILGLERKASDDEIKKAYRKLALKYHPDKNKSPQAEERFKEIAE
AYEVLSDKKKRDIFDNYGEDGLKGGQPGPDGGGQPGAYTYQFHGDPRATF
AQFFGSSDPFGAFFTGGDNMFSGGQGGNTNEIFWNIGGDDMFAFNAQAPS
RKRQQDPPIEHDLFVSLEEVDKGCIKKMKISRMATGSNGPYKEEKVLRIT
VKPGWKAGTKITFPQEGDSAPNKTPADIVFIIRDKPHSLFKREGIDLKYT
AQISLKQALCGALVSVPTLQGSRIQVNPNHEIIKPTTTRRINGLGLPVPK
EPSRRGDLIVSFDIKFPDTLAPSLQNQLSELLPN*
BS09278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DnaJ-1-PA | 334 | CG10578-PA | 1..334 | 1..334 | 1769 | 100 | Plus |
DnaJ-1-PB | 334 | CG10578-PB | 1..334 | 1..334 | 1769 | 100 | Plus |
CG5001-PC | 346 | CG5001-PC | 1..346 | 1..332 | 1038 | 57.3 | Plus |
CG5001-PD | 350 | CG5001-PD | 1..350 | 1..332 | 1034 | 57 | Plus |
CG5001-PA | 350 | CG5001-PA | 1..350 | 1..332 | 1034 | 57 | Plus |