Clone Sequence Records
BS09279.3prime Sequence
907 bp (833 high quality bases) assembled on 2006-01-29
> BS09279.3prime
ATGGTCTAGAAAGCTTTCAGCTTGAATTCGTTTTATACCTTTGGAAGTTT
TGGCGCTTCACATAATTTTCGCGAACGAACTCGATAATCTGCTTCTGGGT
TTTTCCGCTATAGCGGAATGAACTACCCCGCGAGAGAACGCGAGTTTTGC
GCCTGGGCGTATTTTGTACGGCAGTGCATCGGAAGAATCCGTGATTTTCG
ACGCATTTTTTCCAGAAGTTTTTGCACTCGTTGCGACCCTCGAAGAAGAA
CTCCACGGTATCCTTGTAATATCCATATCCCTCTGGATGCAGTTTGACCA
GGAATCGCTTGCGCTTGAAAGAAATCTTGCGTATCTTAGCCCACGAGAAG
GTGTTGATCCGCGTGATGTTCTGGAAGACTGTGATGCCCATGTGGGCCAC
AGCCAGATTAAGCGGCACCCCTTCCACATCCTTCGCCGGATGCATTTTCA
TGCCATACAGCTCACACCTCCGAGCCGTCTCCAAGAGGTTAAGGTCCGCC
TCCGCCGGGGATTGACCAACATGCTTTTTGTGGTTCTCCATAATCTTTCG
CTGCATGGTGGCGTCCTGGTTGGGCACAAAGCGATACGAGGACAGATAAG
TATGGTCGGGATAATCCTCCGGAACGAAGTCGCCGCATGACGCCTGTACA
ATGTAGCTTGCCATTAAGGCCGCCGTGTTATCGTTGCACTGCAGACTGCC
TGTGGCCAGGTCTCGTTTGATTTGCAAGCAGAACAAATACCTGGTGTACT
CCTCTTCCAATTGCGCTGGATCGGGTGTATAGAACTTGATGCAGAAGCGC
AGCACTGGATCGATAAGAGAGAGGCCCACCTGGCGGGTCATTGGCTTCTC
CAGATCCAGCCAGTATTTGGTATGTGTGGAGACTTCCTGGTACTCCAAGC
CGAAGTA
BS09279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31536-PC | 1215 | Cdep-RC | 325..1215 | 907..17 | 4405 | 99.7 | Minus |
CG31536-PE | 3504 | Cdep-RE | 325..1195 | 907..37 | 4305 | 99.7 | Minus |
CG31536-PA | 2796 | Cdep-RA | 325..958 | 907..274 | 3120 | 99.6 | Minus |
CG31536-PB | 2574 | Cdep-RB | 492..736 | 518..274 | 1200 | 99.5 | Minus |
CG31536-PB | 2574 | Cdep-RB | 325..491 | 907..741 | 810 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdep-RC | 2537 | CG44193-RC | 1336..2226 | 907..17 | 4425 | 99.8 | Minus |
Cdep-RG | 15976 | CG44193-RG | 1336..2206 | 907..37 | 4325 | 99.8 | Minus |
Cdep-RE | 5038 | CG44193-RE | 1336..2206 | 907..37 | 4325 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4923234..4923478 | 518..274 | 1210 | 99.6 | Minus |
3R | 32079331 | 3R | 4922945..4923168 | 742..519 | 1120 | 100 | Minus |
3R | 32079331 | 3R | 4922658..4922826 | 907..739 | 830 | 99.4 | Minus |
3R | 32079331 | 3R | 4923532..4923696 | 274..110 | 810 | 99.4 | Minus |
3R | 32079331 | 3R | 4923753..4923850 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:58:24 has no hits.
BS09279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:47 Download gff for
BS09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-PC | 326..1215 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:53 Download gff for
BS09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31536-PC | 326..1215 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:12 Download gff for
BS09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 1337..2231 | 10..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:25 Download gff for
BS09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 1337..2231 | 10..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:25 Download gff for
BS09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4923234..4923477 | 275..518 | 99 | -> | Minus |
3R | 4922947..4923168 | 519..740 | 100 | -> | Minus |
3R | 4923532..4923692 | 114..274 | 100 | -> | Minus |
3R | 4923754..4923855 | 10..113 | 97 | | Minus |
3R | 4922659..4922824 | 741..906 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:12 Download gff for
BS09279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 748381..748546 | 741..906 | 99 | -> | Minus |
arm_3R | 748669..748890 | 519..740 | 100 | -> | Minus |
arm_3R | 748956..749199 | 275..518 | 99 | -> | Minus |
arm_3R | 749254..749414 | 114..274 | 100 | -> | Minus |
arm_3R | 749476..749577 | 10..113 | 97 | | Minus |
BS09279.5prime Sequence
903 bp (776 high quality bases) assembled on 2006-01-28
> BS09279.5prime
GAAGTTATCAGTCGACATGTCCCTGGCCGACATGGGCACAGCCTCTCGAT
CCGCCGGCGGAGAAGGTGGTAGACACTATGATCTAGCCACGGGCGGAGCT
GGAAGTGGGGGTCATCCAGTGGGCGGCGGTCTGCCCGGAGGCCGCATGAC
GCACTCCCTCAGCACTCCTTCCGGGGTGGATGGCACGCCCTCCACACCCC
GACATCGCGGCGGCAAAAAGCTGACTGTTCGCATCCAGATGCTGGACGAC
TCGATCACCATGTTCCAAGTACAGGCTAAAGCACTGGGCCGCGTGCTGTT
TGAACAGGTATGCCGTCAGCTGAATTTACTGGAGGCCGACTACTTCGGCT
TGGAGTACCAGGAAGTCTCCACACATACCAAATACTGGCTGGATCTGGAG
AAGCCAATGAACCGCCAGGTGGGCCTCTCTCTTATCGATCCAGTGCTGCG
CTTCTGCATCAAGTTCTATACACCCGATCCAGCGCAATTGGAAGAGGAGT
ACACCAGGTATTTGTTCTGCTTGCAAATCAAACGAGACCTGGCCACAGGC
AGTCTGCAGTGCAACGATAACACGGCGGCCTTAATGGCAAGCTACATTGT
ACAGGCGTCATGCGGCGACTTCGTTCCGGAGGATTATCCCGACCATACTT
ATCTGTCCTCGTATCGCTTTGTGCCCAACCAGGACGCCACCATGCAGCGA
AAGATTATGGAGAACCACAAAAAGCATGTTGGTCAATCCCCGGCGGAGGC
GGACCTTAACCTCTTGGAGACGGCTCGGAGGTGTGAGCTGTATGGCATGA
AAATGCATCCGGCGAAGGATGTGGAAGGGGTGCCGCTTTATCTGGCTGTG
GCCCACATGGGCATCACAGTCTTCCAGAACATCACGCGGATCAACACCTT
CTC
BS09279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31536-PE | 3504 | Cdep-RE | 1..887 | 17..903 | 4410 | 99.8 | Plus |
CG31536-PA | 2796 | Cdep-RA | 1..887 | 17..903 | 4410 | 99.8 | Plus |
CG31536-PC | 1215 | Cdep-RC | 1..887 | 17..903 | 4410 | 99.8 | Plus |
CG31536-PB | 2574 | Cdep-RB | 1..491 | 17..507 | 2455 | 100 | Plus |
CG31536-PB | 2574 | Cdep-RB | 492..665 | 730..903 | 845 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdep-RG | 15976 | CG44193-RG | 1012..1898 | 17..903 | 4420 | 99.9 | Plus |
Cdep-RF | 5026 | CG44193-RF | 1012..1898 | 17..903 | 4420 | 99.9 | Plus |
Cdep-RC | 2537 | CG44193-RC | 1012..1898 | 17..903 | 4420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4917874..4918132 | 17..275 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 4922590..4922826 | 273..509 | 1185 | 100 | Plus |
3R | 32079331 | 3R | 4922945..4923168 | 506..729 | 1120 | 100 | Plus |
3R | 32079331 | 3R | 4923234..4923407 | 730..903 | 855 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:16:20 has no hits.
BS09279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:49 Download gff for
BS09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-PC | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:55 Download gff for
BS09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31536-PC | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:31 Download gff for
BS09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 1012..1898 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:50 Download gff for
BS09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 1012..1898 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:50 Download gff for
BS09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4917874..4918131 | 17..274 | 100 | -> | Plus |
3R | 4922592..4922824 | 275..507 | 100 | -> | Plus |
3R | 4922947..4923168 | 508..729 | 100 | -> | Plus |
3R | 4923234..4923407 | 730..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:31 Download gff for
BS09279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 743596..743853 | 17..274 | 100 | -> | Plus |
arm_3R | 748314..748546 | 275..507 | 100 | -> | Plus |
arm_3R | 748669..748890 | 508..729 | 100 | -> | Plus |
arm_3R | 748956..749129 | 730..903 | 99 | | Plus |
BS09279.complete Sequence
1247 bp (1247 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636390
> BS09279.complete
GAAGTTATCAGTCGACATGTCCCTGGCCGACATGGGCACAGCCTCTCGAT
CCGCCGGCGGAGAAGGTGGTAGACACTATGATCTAGCCACGGGCGGAGCT
GGAAGTGGGGGTCATCCAGTGGGCGGCGGTCTGCCCGGAGGCCGCATGAC
GCACTCCCTCAGCACTCCTTCCGGGGTGGATGGCACGCCCTCCACACCCC
GACATCGCGGCGGCAAAAAGCTGACTGTTCGCATCCAGATGCTGGACGAC
TCGATCACCATGTTCCAAGTACAGGCTAAAGCACTGGGCCGCGTGCTGTT
TGAACAGGTATGCCGTCAGCTGAATTTACTGGAGGCCGACTACTTCGGCT
TGGAGTACCAGGAAGTCTCCACACATACCAAATACTGGCTGGATCTGGAG
AAGCCAATGAACCGCCAGGTGGGCCTCTCTCTTATCGATCCAGTGCTGCG
CTTCTGCATCAAGTTCTATACACCCGATCCAGCGCAATTGGAAGAGGAGT
ACACCAGGTATTTGTTCTGCTTGCAAATCAAACGAGACCTGGCCACAGGC
AGTCTGCAGTGCAACGATAACACGGCGGCCTTAATGGCAAGCTACATTGT
ACAGGCGTCATGCGGCGACTTCGTTCCGGAGGATTATCCCGACCATACTT
ATCTGTCCTCGTATCGCTTTGTGCCCAACCAGGACGCCACCATGCAGCGA
AAGATTATGGAGAACCACAAAAAGCATGTTGGTCAATCCCCGGCGGAGGC
GGACCTTAACCTCTTGGAGACGGCTCGGAGGTGTGAGCTGTATGGCATGA
AAATGCATCCGGCGAAGGATGTGGAAGGGGTGCCGCTTAATCTGGCTGTG
GCCCACATGGGCATCACAGTCTTCCAGAACATCACGCGGATCAACACCTT
CTCGTGGGCTAAGATACGCAAGATTTCTTTCAAGCGCAAGCGATTCCTGG
TCAAACTGCATCCAGAGGGATATGGATATTACAAGGATACCGTGGAGTTC
TTCTTCGAGGGTCGCAACGAGTGCAAAAACTTCTGGAAAAAATGCGTCGA
AAATCACGGATTCTTCCGATGCACTGCCGTACAAAATACGCCCAGGCGCA
AAACTCGCGTTCTCTCGCGGGGTAGTTCATTCCGCTATAGCGGAAAAACC
CAGAAGCAGATTATCGAGTTCGTTCGCGAAAATTATGTGAAGCGCCAAAA
CTTCCAAAGGTATAAAACGAATTCAAGCTGAAAGCTTTCTAGACCAT
BS09279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdep-RC | 1215 | CG44193-PC | 1..1215 | 17..1231 | 6060 | 99.9 | Plus |
Cdep-RG | 12822 | CG44193-PG | 1..1195 | 17..1211 | 5960 | 99.9 | Plus |
Cdep-RE | 3504 | CG44193-PE | 1..1195 | 17..1211 | 5960 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdep-RC | 2537 | CG44193-RC | 1012..2226 | 17..1231 | 6060 | 99.9 | Plus |
Cdep-RG | 15976 | CG44193-RG | 1012..2206 | 17..1211 | 5960 | 99.9 | Plus |
Cdep-RE | 5038 | CG44193-RE | 1012..2206 | 17..1211 | 5960 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4917874..4918132 | 17..275 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 4923234..4923478 | 730..974 | 1210 | 99.6 | Plus |
3R | 32079331 | 3R | 4922590..4922826 | 273..509 | 1185 | 100 | Plus |
3R | 32079331 | 3R | 4922945..4923168 | 506..729 | 1120 | 100 | Plus |
3R | 32079331 | 3R | 4923532..4923696 | 974..1138 | 810 | 99.4 | Plus |
3R | 32079331 | 3R | 4923753..4923850 | 1134..1231 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:03:55 has no hits.
BS09279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:36 Download gff for
BS09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 1..1215 | 17..1231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:04 Download gff for
BS09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 994..2213 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:30 Download gff for
BS09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 1012..2225 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:36 Download gff for
BS09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 994..2213 | 17..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:15 Download gff for
BS09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdep-RC | 1012..2225 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:15 Download gff for
BS09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4923234..4923477 | 730..973 | 99 | -> | Plus |
3R | 4923532..4923692 | 974..1134 | 100 | -> | Plus |
3R | 4923754..4923849 | 1135..1230 | 100 | | Plus |
3R | 4917874..4918131 | 17..274 | 100 | -> | Plus |
3R | 4922592..4922824 | 275..507 | 100 | -> | Plus |
3R | 4922947..4923168 | 508..729 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:30 Download gff for
BS09279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 748956..749199 | 730..973 | 99 | -> | Plus |
arm_3R | 743596..743853 | 17..274 | 100 | -> | Plus |
arm_3R | 748314..748546 | 275..507 | 100 | -> | Plus |
arm_3R | 748669..748890 | 508..729 | 100 | -> | Plus |
arm_3R | 749254..749414 | 974..1134 | 100 | -> | Plus |
arm_3R | 749476..749571 | 1135..1230 | 100 | | Plus |
BS09279.pep Sequence
Translation from 16 to 1230
> BS09279.pep
MSLADMGTASRSAGGEGGRHYDLATGGAGSGGHPVGGGLPGGRMTHSLST
PSGVDGTPSTPRHRGGKKLTVRIQMLDDSITMFQVQAKALGRVLFEQVCR
QLNLLEADYFGLEYQEVSTHTKYWLDLEKPMNRQVGLSLIDPVLRFCIKF
YTPDPAQLEEEYTRYLFCLQIKRDLATGSLQCNDNTAALMASYIVQASCG
DFVPEDYPDHTYLSSYRFVPNQDATMQRKIMENHKKHVGQSPAEADLNLL
ETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINTFSWAKI
RKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFF
RCTAVQNTPRRKTRVLSRGSSFRYSGKTQKQIIEFVRENYVKRQNFQRYK
TNSS*
BS09279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdep-PC | 404 | CG44193-PC | 1..404 | 1..404 | 2151 | 100 | Plus |
Cdep-PE | 1167 | CG44193-PE | 1..398 | 1..398 | 2120 | 100 | Plus |
Cdep-PG | 4273 | CG44193-PG | 1..398 | 1..398 | 2120 | 100 | Plus |
Cdep-PF | 1163 | CG44193-PF | 1..394 | 1..398 | 2080 | 99 | Plus |
cora-PE | 699 | CG11949-PE | 21..340 | 58..381 | 691 | 41.4 | Plus |