Clone BS09279 Report

Search the DGRC for BS09279

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCdep-RC
Protein status:BS09279.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09279.3prime Sequence

907 bp (833 high quality bases) assembled on 2006-01-29

> BS09279.3prime
ATGGTCTAGAAAGCTTTCAGCTTGAATTCGTTTTATACCTTTGGAAGTTT
TGGCGCTTCACATAATTTTCGCGAACGAACTCGATAATCTGCTTCTGGGT
TTTTCCGCTATAGCGGAATGAACTACCCCGCGAGAGAACGCGAGTTTTGC
GCCTGGGCGTATTTTGTACGGCAGTGCATCGGAAGAATCCGTGATTTTCG
ACGCATTTTTTCCAGAAGTTTTTGCACTCGTTGCGACCCTCGAAGAAGAA
CTCCACGGTATCCTTGTAATATCCATATCCCTCTGGATGCAGTTTGACCA
GGAATCGCTTGCGCTTGAAAGAAATCTTGCGTATCTTAGCCCACGAGAAG
GTGTTGATCCGCGTGATGTTCTGGAAGACTGTGATGCCCATGTGGGCCAC
AGCCAGATTAAGCGGCACCCCTTCCACATCCTTCGCCGGATGCATTTTCA
TGCCATACAGCTCACACCTCCGAGCCGTCTCCAAGAGGTTAAGGTCCGCC
TCCGCCGGGGATTGACCAACATGCTTTTTGTGGTTCTCCATAATCTTTCG
CTGCATGGTGGCGTCCTGGTTGGGCACAAAGCGATACGAGGACAGATAAG
TATGGTCGGGATAATCCTCCGGAACGAAGTCGCCGCATGACGCCTGTACA
ATGTAGCTTGCCATTAAGGCCGCCGTGTTATCGTTGCACTGCAGACTGCC
TGTGGCCAGGTCTCGTTTGATTTGCAAGCAGAACAAATACCTGGTGTACT
CCTCTTCCAATTGCGCTGGATCGGGTGTATAGAACTTGATGCAGAAGCGC
AGCACTGGATCGATAAGAGAGAGGCCCACCTGGCGGGTCATTGGCTTCTC
CAGATCCAGCCAGTATTTGGTATGTGTGGAGACTTCCTGGTACTCCAAGC
CGAAGTA

BS09279.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31536-PC 1215 Cdep-RC 325..1215 907..17 4405 99.7 Minus
CG31536-PE 3504 Cdep-RE 325..1195 907..37 4305 99.7 Minus
CG31536-PA 2796 Cdep-RA 325..958 907..274 3120 99.6 Minus
CG31536-PB 2574 Cdep-RB 492..736 518..274 1200 99.5 Minus
CG31536-PB 2574 Cdep-RB 325..491 907..741 810 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cdep-RC 2537 CG44193-RC 1336..2226 907..17 4425 99.8 Minus
Cdep-RG 15976 CG44193-RG 1336..2206 907..37 4325 99.8 Minus
Cdep-RE 5038 CG44193-RE 1336..2206 907..37 4325 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4923234..4923478 518..274 1210 99.6 Minus
3R 32079331 3R 4922945..4923168 742..519 1120 100 Minus
3R 32079331 3R 4922658..4922826 907..739 830 99.4 Minus
3R 32079331 3R 4923532..4923696 274..110 810 99.4 Minus
3R 32079331 3R 4923753..4923850 114..17 490 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:58:24 has no hits.

BS09279.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:47 Download gff for BS09279.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdep-PC 326..1215 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:53 Download gff for BS09279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31536-PC 326..1215 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:12 Download gff for BS09279.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 1337..2231 10..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:25 Download gff for BS09279.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 1337..2231 10..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:25 Download gff for BS09279.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4923234..4923477 275..518 99 -> Minus
3R 4922947..4923168 519..740 100 -> Minus
3R 4923532..4923692 114..274 100 -> Minus
3R 4923754..4923855 10..113 97   Minus
3R 4922659..4922824 741..906 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:12 Download gff for BS09279.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 748381..748546 741..906 99 -> Minus
arm_3R 748669..748890 519..740 100 -> Minus
arm_3R 748956..749199 275..518 99 -> Minus
arm_3R 749254..749414 114..274 100 -> Minus
arm_3R 749476..749577 10..113 97   Minus

BS09279.5prime Sequence

903 bp (776 high quality bases) assembled on 2006-01-28

> BS09279.5prime
GAAGTTATCAGTCGACATGTCCCTGGCCGACATGGGCACAGCCTCTCGAT
CCGCCGGCGGAGAAGGTGGTAGACACTATGATCTAGCCACGGGCGGAGCT
GGAAGTGGGGGTCATCCAGTGGGCGGCGGTCTGCCCGGAGGCCGCATGAC
GCACTCCCTCAGCACTCCTTCCGGGGTGGATGGCACGCCCTCCACACCCC
GACATCGCGGCGGCAAAAAGCTGACTGTTCGCATCCAGATGCTGGACGAC
TCGATCACCATGTTCCAAGTACAGGCTAAAGCACTGGGCCGCGTGCTGTT
TGAACAGGTATGCCGTCAGCTGAATTTACTGGAGGCCGACTACTTCGGCT
TGGAGTACCAGGAAGTCTCCACACATACCAAATACTGGCTGGATCTGGAG
AAGCCAATGAACCGCCAGGTGGGCCTCTCTCTTATCGATCCAGTGCTGCG
CTTCTGCATCAAGTTCTATACACCCGATCCAGCGCAATTGGAAGAGGAGT
ACACCAGGTATTTGTTCTGCTTGCAAATCAAACGAGACCTGGCCACAGGC
AGTCTGCAGTGCAACGATAACACGGCGGCCTTAATGGCAAGCTACATTGT
ACAGGCGTCATGCGGCGACTTCGTTCCGGAGGATTATCCCGACCATACTT
ATCTGTCCTCGTATCGCTTTGTGCCCAACCAGGACGCCACCATGCAGCGA
AAGATTATGGAGAACCACAAAAAGCATGTTGGTCAATCCCCGGCGGAGGC
GGACCTTAACCTCTTGGAGACGGCTCGGAGGTGTGAGCTGTATGGCATGA
AAATGCATCCGGCGAAGGATGTGGAAGGGGTGCCGCTTTATCTGGCTGTG
GCCCACATGGGCATCACAGTCTTCCAGAACATCACGCGGATCAACACCTT
CTC

BS09279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31536-PE 3504 Cdep-RE 1..887 17..903 4410 99.8 Plus
CG31536-PA 2796 Cdep-RA 1..887 17..903 4410 99.8 Plus
CG31536-PC 1215 Cdep-RC 1..887 17..903 4410 99.8 Plus
CG31536-PB 2574 Cdep-RB 1..491 17..507 2455 100 Plus
CG31536-PB 2574 Cdep-RB 492..665 730..903 845 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cdep-RG 15976 CG44193-RG 1012..1898 17..903 4420 99.9 Plus
Cdep-RF 5026 CG44193-RF 1012..1898 17..903 4420 99.9 Plus
Cdep-RC 2537 CG44193-RC 1012..1898 17..903 4420 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4917874..4918132 17..275 1295 100 Plus
3R 32079331 3R 4922590..4922826 273..509 1185 100 Plus
3R 32079331 3R 4922945..4923168 506..729 1120 100 Plus
3R 32079331 3R 4923234..4923407 730..903 855 99.4 Plus
Blast to na_te.dros performed on 2015-02-11 10:16:20 has no hits.

BS09279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:04:49 Download gff for BS09279.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdep-PC 1..887 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:12:55 Download gff for BS09279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31536-PC 1..887 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:31 Download gff for BS09279.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 1012..1898 17..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:50 Download gff for BS09279.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 1012..1898 17..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:50 Download gff for BS09279.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4917874..4918131 17..274 100 -> Plus
3R 4922592..4922824 275..507 100 -> Plus
3R 4922947..4923168 508..729 100 -> Plus
3R 4923234..4923407 730..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:31 Download gff for BS09279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 743596..743853 17..274 100 -> Plus
arm_3R 748314..748546 275..507 100 -> Plus
arm_3R 748669..748890 508..729 100 -> Plus
arm_3R 748956..749129 730..903 99   Plus

BS09279.complete Sequence

1247 bp (1247 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636390

> BS09279.complete
GAAGTTATCAGTCGACATGTCCCTGGCCGACATGGGCACAGCCTCTCGAT
CCGCCGGCGGAGAAGGTGGTAGACACTATGATCTAGCCACGGGCGGAGCT
GGAAGTGGGGGTCATCCAGTGGGCGGCGGTCTGCCCGGAGGCCGCATGAC
GCACTCCCTCAGCACTCCTTCCGGGGTGGATGGCACGCCCTCCACACCCC
GACATCGCGGCGGCAAAAAGCTGACTGTTCGCATCCAGATGCTGGACGAC
TCGATCACCATGTTCCAAGTACAGGCTAAAGCACTGGGCCGCGTGCTGTT
TGAACAGGTATGCCGTCAGCTGAATTTACTGGAGGCCGACTACTTCGGCT
TGGAGTACCAGGAAGTCTCCACACATACCAAATACTGGCTGGATCTGGAG
AAGCCAATGAACCGCCAGGTGGGCCTCTCTCTTATCGATCCAGTGCTGCG
CTTCTGCATCAAGTTCTATACACCCGATCCAGCGCAATTGGAAGAGGAGT
ACACCAGGTATTTGTTCTGCTTGCAAATCAAACGAGACCTGGCCACAGGC
AGTCTGCAGTGCAACGATAACACGGCGGCCTTAATGGCAAGCTACATTGT
ACAGGCGTCATGCGGCGACTTCGTTCCGGAGGATTATCCCGACCATACTT
ATCTGTCCTCGTATCGCTTTGTGCCCAACCAGGACGCCACCATGCAGCGA
AAGATTATGGAGAACCACAAAAAGCATGTTGGTCAATCCCCGGCGGAGGC
GGACCTTAACCTCTTGGAGACGGCTCGGAGGTGTGAGCTGTATGGCATGA
AAATGCATCCGGCGAAGGATGTGGAAGGGGTGCCGCTTAATCTGGCTGTG
GCCCACATGGGCATCACAGTCTTCCAGAACATCACGCGGATCAACACCTT
CTCGTGGGCTAAGATACGCAAGATTTCTTTCAAGCGCAAGCGATTCCTGG
TCAAACTGCATCCAGAGGGATATGGATATTACAAGGATACCGTGGAGTTC
TTCTTCGAGGGTCGCAACGAGTGCAAAAACTTCTGGAAAAAATGCGTCGA
AAATCACGGATTCTTCCGATGCACTGCCGTACAAAATACGCCCAGGCGCA
AAACTCGCGTTCTCTCGCGGGGTAGTTCATTCCGCTATAGCGGAAAAACC
CAGAAGCAGATTATCGAGTTCGTTCGCGAAAATTATGTGAAGCGCCAAAA
CTTCCAAAGGTATAAAACGAATTCAAGCTGAAAGCTTTCTAGACCAT

BS09279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cdep-RC 1215 CG44193-PC 1..1215 17..1231 6060 99.9 Plus
Cdep-RG 12822 CG44193-PG 1..1195 17..1211 5960 99.9 Plus
Cdep-RE 3504 CG44193-PE 1..1195 17..1211 5960 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cdep-RC 2537 CG44193-RC 1012..2226 17..1231 6060 99.9 Plus
Cdep-RG 15976 CG44193-RG 1012..2206 17..1211 5960 99.9 Plus
Cdep-RE 5038 CG44193-RE 1012..2206 17..1211 5960 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4917874..4918132 17..275 1295 100 Plus
3R 32079331 3R 4923234..4923478 730..974 1210 99.6 Plus
3R 32079331 3R 4922590..4922826 273..509 1185 100 Plus
3R 32079331 3R 4922945..4923168 506..729 1120 100 Plus
3R 32079331 3R 4923532..4923696 974..1138 810 99.4 Plus
3R 32079331 3R 4923753..4923850 1134..1231 490 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:03:55 has no hits.

BS09279.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:36 Download gff for BS09279.complete
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 1..1215 17..1231 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:04 Download gff for BS09279.complete
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 994..2213 17..1238 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:26:30 Download gff for BS09279.complete
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 1012..2225 17..1230 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:36 Download gff for BS09279.complete
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 994..2213 17..1238 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:15 Download gff for BS09279.complete
Subject Subject Range Query Range Percent Splice Strand
Cdep-RC 1012..2225 17..1230 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:15 Download gff for BS09279.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4923234..4923477 730..973 99 -> Plus
3R 4923532..4923692 974..1134 100 -> Plus
3R 4923754..4923849 1135..1230 100   Plus
3R 4917874..4918131 17..274 100 -> Plus
3R 4922592..4922824 275..507 100 -> Plus
3R 4922947..4923168 508..729 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:26:30 Download gff for BS09279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 748956..749199 730..973 99 -> Plus
arm_3R 743596..743853 17..274 100 -> Plus
arm_3R 748314..748546 275..507 100 -> Plus
arm_3R 748669..748890 508..729 100 -> Plus
arm_3R 749254..749414 974..1134 100 -> Plus
arm_3R 749476..749571 1135..1230 100   Plus

BS09279.pep Sequence

Translation from 16 to 1230

> BS09279.pep
MSLADMGTASRSAGGEGGRHYDLATGGAGSGGHPVGGGLPGGRMTHSLST
PSGVDGTPSTPRHRGGKKLTVRIQMLDDSITMFQVQAKALGRVLFEQVCR
QLNLLEADYFGLEYQEVSTHTKYWLDLEKPMNRQVGLSLIDPVLRFCIKF
YTPDPAQLEEEYTRYLFCLQIKRDLATGSLQCNDNTAALMASYIVQASCG
DFVPEDYPDHTYLSSYRFVPNQDATMQRKIMENHKKHVGQSPAEADLNLL
ETARRCELYGMKMHPAKDVEGVPLNLAVAHMGITVFQNITRINTFSWAKI
RKISFKRKRFLVKLHPEGYGYYKDTVEFFFEGRNECKNFWKKCVENHGFF
RCTAVQNTPRRKTRVLSRGSSFRYSGKTQKQIIEFVRENYVKRQNFQRYK
TNSS*

BS09279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
Cdep-PC 404 CG44193-PC 1..404 1..404 2151 100 Plus
Cdep-PE 1167 CG44193-PE 1..398 1..398 2120 100 Plus
Cdep-PG 4273 CG44193-PG 1..398 1..398 2120 100 Plus
Cdep-PF 1163 CG44193-PF 1..394 1..398 2080 99 Plus
cora-PE 699 CG11949-PE 21..340 58..381 691 41.4 Plus