Clone Sequence Records
BS09285.3prime Sequence
938 bp (823 high quality bases) assembled on 2006-01-29
> BS09285.3prime
ATGGTCTAGATAGCTTCTATTTCGTGGACCCTTCGCACTGCTGCACTTGA
ACCAGTAAGAGAAGAATGCGATTCATTAAATTGTCCGCGTCCGAGTCCTC
CATGCTGTTTAGCTTGGCTGAAATAAAGCCGCAGAACTTGGAGTTCAAAA
CCTCACGTACAGTTTGTGGGGGCGGCAGATCCAACCCTCCGCTTGCGACG
CCCTGTTGCTGCCGGAGATGGCGGTGCTGTTGCAGCATTTGTTCTTCGTA
GTCGTCACCATCGATAACCGCATCGCCGTGACCGTTTCCTTCCTCCAAAA
CATCTTGATCGACGTTACGGCGAAGCTTGCGGGACATGACCACATCGTCC
ACACCAACATTGGGGCTACCGCGTGAGTTGGAATCCAGAATCAGAGGATA
AGGGAAATCTGCATCGATGGCATCCAACTCCTCCACTACGTCGGATGCGT
GGGCGATATCTTCGTCCCCGCTGCGTATCGAGCTGTCGTCCATGTCTTCA
TAGCTGTGATGCTGTGCCCTTTGCTCGTTTCTCGTTGAGCTCACCCGACT
GTCGTTGTGAGCCTGGTGAGCGGGCAGAGGAAGTGGCCCGCCGCCGGAGC
TACTCCCACTTGTGCTACTTCCGGCCCCACCGCCCACCGAGAGATCCAGC
TCCGGCTTCACATAGTAGTCGCAATAGTAGTGATCGTCGCTTACATTGAG
CGAGGAGCACTTTGAGAGATTTAACACTGAGGCGGACTCGTTAAAGGAAT
TGGACAGCTTCAGGGTCATTGCCTTTCCCCCTGCAGCCAAGCTGTTACTG
TTGTTGTTGTTGTTGTTGTTATTGTTAATATGGCCATAGGTTGTCAGGCT
TAGATCGGTTGCATGCGAAGCGCCCTTTCGTTCTCTGATGACATCGCGCA
GGAAATCCATGGGCTCATAGAGACTCCACTTGGGGCTG
BS09285.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11100-PB | 1314 | Mes2-RB | 397..1314 | 934..17 | 4565 | 99.8 | Minus |
CG11100-PC | 1119 | Mes2-RC | 202..1119 | 934..17 | 4565 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-RC | 2208 | CG11100-RC | 433..1351 | 934..16 | 4580 | 99.9 | Minus |
Mes2-RB | 2302 | CG11100-RB | 527..1445 | 934..16 | 4580 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22950532..22951391 | 875..16 | 4300 | 100 | Minus |
3L | 28110227 | 3L | 22946512..22946571 | 934..875 | 285 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:40:08 has no hits.
BS09285.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:01 Download gff for
BS09285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-PB | 393..1314 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:07 Download gff for
BS09285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11100-PC | 198..1119 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:28 Download gff for
BS09285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 523..1449 | 13..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:44 Download gff for
BS09285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 523..1449 | 13..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:44 Download gff for
BS09285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22946508..22946570 | 876..938 | 95 | -> | Minus |
3L | 22950532..22951395 | 13..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:28 Download gff for
BS09285.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22939608..22939670 | 876..938 | 95 | -> | Minus |
arm_3L | 22943632..22944495 | 13..875 | 99 | | Minus |
BS09285.5prime Sequence
880 bp (798 high quality bases) assembled on 2006-01-28
> BS09285.5prime
GAAGTTATCAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCA
CCCACTCGCTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGAC
ATGAAGCCCAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCC
CTCTCAGAAGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGA
AGCTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTC
CCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACAT
AGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGT
CCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGC
AATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCG
CGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCC
TGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGT
AACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTC
CTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCA
ATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTG
GATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTC
CGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTC
GGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAG
GACATGGACGACAGCTCGATACGCAGCGGG
BS09285.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11100-PB | 1314 | Mes2-RB | 1..864 | 17..880 | 4295 | 99.8 | Plus |
CG11100-PC | 1119 | Mes2-RC | 1..669 | 212..880 | 3320 | 99.8 | Plus |
CG11100-PA | 513 | Mes2-RA | 1..154 | 17..170 | 770 | 100 | Plus |
CG11100-PA | 513 | Mes2-RA | 484..513 | 171..200 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-RB | 2302 | CG11100-RB | 131..994 | 17..880 | 4305 | 99.9 | Plus |
Mes2-RC | 2208 | CG11100-RC | 191..900 | 171..880 | 3535 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22950532..22950940 | 472..880 | 2030 | 99.8 | Plus |
3L | 28110227 | 3L | 22946270..22946571 | 171..472 | 1510 | 100 | Plus |
3L | 28110227 | 3L | 22945787..22945940 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:08:38 has no hits.
BS09285.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:02 Download gff for
BS09285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-PB | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:09 Download gff for
BS09285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11100-PB | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:18:37 Download gff for
BS09285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 124..994 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:25 Download gff for
BS09285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 124..994 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:25 Download gff for
BS09285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22950532..22950940 | 472..880 | 99 | | Plus |
3L | 22945780..22945940 | 9..170 | 97 | -> | Plus |
3L | 22946270..22946570 | 171..471 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:18:37 Download gff for
BS09285.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22938880..22939040 | 9..170 | 97 | -> | Plus |
arm_3L | 22939370..22939670 | 171..471 | 100 | -> | Plus |
arm_3L | 22943632..22944040 | 472..880 | 99 | | Plus |
BS09285.complete Sequence
1346 bp assembled on 2008-08-15
GenBank Submission: KX804697
> BS09285.complete
GAAGTTATCAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCA
CCCACTCGCTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGAC
ATGAAGCCCAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCC
CTCTCAGAAGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGA
AGCTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTC
CCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACAT
AGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGT
CCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGC
AATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCG
CGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCC
TGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGT
AACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTC
CTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCA
ATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTG
GATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTC
CGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTC
GGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAA
GACATGGACGACAGCTCGATACGCAGCGGGGACGAAGATATCGCCCACGC
ATCCGACGTAGTGGAGGAGTTGGATGCCATCGATGCAGATTTCCCTTATC
CTCTGATTCTGGATTCCAACTCACGCGGTAGCCCCAATGTTGGTGTGGAC
GATGTGGTCATGTCCCGCAAGCTTCGCCGTAACGTCGATCAAGATGTTTT
GGAGGAAGGAAACGGTCACGGCGATGCGGTTATCGATGGTGACGACTACG
AAGAACAAATGCTGCAACAGCACCGCCATCTCCGGCAGCAACAGGGCGTC
GCAAGCGGAGGGTTGGATCTGCCGCCCCCACAAACTGTACGTGAGGTTTT
GAACTCCAAGTTCTGCGGCTTTATTTCAGCCAAGCTAAACAGCATGGAGG
ACTCGGACGCGGACAATTTAATGAATCGCATTCTTCTCTTACTGGTTCAA
GTGCAGCAGTGCGAAGGGTCCACGAAATAGAAGCTATCTAGACCAT
BS09285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-RB | 1314 | CG11100-PB | 1..1314 | 17..1330 | 6570 | 100 | Plus |
Mes2-RC | 1119 | CG11100-PC | 1..1119 | 212..1330 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-RB | 2302 | CG11100-RB | 131..1445 | 17..1331 | 6575 | 100 | Plus |
Mes2-RC | 2208 | CG11100-RC | 191..1351 | 171..1331 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22950532..22951391 | 472..1331 | 4300 | 100 | Plus |
3L | 28110227 | 3L | 22946270..22946571 | 171..472 | 1510 | 100 | Plus |
3L | 28110227 | 3L | 22945787..22945940 | 17..170 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:16:03 has no hits.
BS09285.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:20 Download gff for
BS09285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 122..1447 | 9..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:16:49 Download gff for
BS09285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 131..1438 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:34 Download gff for
BS09285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 129..1436 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:29 Download gff for
BS09285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mes2-RB | 131..1438 | 17..1324 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:29 Download gff for
BS09285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22945787..22945940 | 17..170 | 100 | -> | Plus |
3L | 22946270..22946570 | 171..471 | 100 | -> | Plus |
3L | 22950532..22951384 | 472..1324 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:16:49 Download gff for
BS09285.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22938887..22939040 | 17..170 | 100 | -> | Plus |
arm_3L | 22939370..22939670 | 171..471 | 100 | -> | Plus |
arm_3L | 22943632..22944484 | 472..1324 | 100 | | Plus |
BS09285.pep Sequence
Translation from 16 to 1329
> BS09285.pep
MAPVSGCLPTATHSLQDMSAAAAAIALDMKPKLEPHPLAAATAMPSQKIK
KLVRRNASDKLKLIQMVHDNPILWDSRLPNFKGAEEEKNRAWEHIGREFN
APGRRVARAFKSLRESYRRELAHVKLMGNGFKPKWSLYEAMDFLRDVIRE
RKGASHATDLSLTTYGHINNNNNNNNNSNSLAAGGKAMTLKLSNSFNESA
SVLNLSKCSSLNVSDDHYYCDYYVKPELDLSVGGGAGSSTSGSSSGGGPL
PLPAHQAHNDSRVSSTRNEQRAQHHSYEDMDDSSIRSGDEDIAHASDVVE
ELDAIDADFPYPLILDSNSRGSPNVGVDDVVMSRKLRRNVDQDVLEEGNG
HGDAVIDGDDYEEQMLQQHRHLRQQQGVASGGLDLPPPQTVREVLNSKFC
GFISAKLNSMEDSDADNLMNRILLLLVQVQQCEGSTK*
BS09285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mes2-PB | 437 | CG11100-PB | 1..437 | 1..437 | 2269 | 100 | Plus |
Mes2-PC | 372 | CG11100-PC | 1..372 | 66..437 | 1948 | 100 | Plus |
CG12768-PD | 429 | CG12768-PD | 5..143 | 55..182 | 296 | 46.8 | Plus |
CG12768-PC | 429 | CG12768-PC | 5..143 | 55..182 | 296 | 46.8 | Plus |
CG12768-PB | 429 | CG12768-PB | 5..143 | 55..182 | 296 | 46.8 | Plus |