Clone BS09285 Report

Search the DGRC for BS09285

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:92
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptMes2-RB
Protein status:BS09285.pep: full length peptide match
Sequenced Size:1346

Clone Sequence Records

BS09285.3prime Sequence

938 bp (823 high quality bases) assembled on 2006-01-29

> BS09285.3prime
ATGGTCTAGATAGCTTCTATTTCGTGGACCCTTCGCACTGCTGCACTTGA
ACCAGTAAGAGAAGAATGCGATTCATTAAATTGTCCGCGTCCGAGTCCTC
CATGCTGTTTAGCTTGGCTGAAATAAAGCCGCAGAACTTGGAGTTCAAAA
CCTCACGTACAGTTTGTGGGGGCGGCAGATCCAACCCTCCGCTTGCGACG
CCCTGTTGCTGCCGGAGATGGCGGTGCTGTTGCAGCATTTGTTCTTCGTA
GTCGTCACCATCGATAACCGCATCGCCGTGACCGTTTCCTTCCTCCAAAA
CATCTTGATCGACGTTACGGCGAAGCTTGCGGGACATGACCACATCGTCC
ACACCAACATTGGGGCTACCGCGTGAGTTGGAATCCAGAATCAGAGGATA
AGGGAAATCTGCATCGATGGCATCCAACTCCTCCACTACGTCGGATGCGT
GGGCGATATCTTCGTCCCCGCTGCGTATCGAGCTGTCGTCCATGTCTTCA
TAGCTGTGATGCTGTGCCCTTTGCTCGTTTCTCGTTGAGCTCACCCGACT
GTCGTTGTGAGCCTGGTGAGCGGGCAGAGGAAGTGGCCCGCCGCCGGAGC
TACTCCCACTTGTGCTACTTCCGGCCCCACCGCCCACCGAGAGATCCAGC
TCCGGCTTCACATAGTAGTCGCAATAGTAGTGATCGTCGCTTACATTGAG
CGAGGAGCACTTTGAGAGATTTAACACTGAGGCGGACTCGTTAAAGGAAT
TGGACAGCTTCAGGGTCATTGCCTTTCCCCCTGCAGCCAAGCTGTTACTG
TTGTTGTTGTTGTTGTTGTTATTGTTAATATGGCCATAGGTTGTCAGGCT
TAGATCGGTTGCATGCGAAGCGCCCTTTCGTTCTCTGATGACATCGCGCA
GGAAATCCATGGGCTCATAGAGACTCCACTTGGGGCTG

BS09285.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11100-PB 1314 Mes2-RB 397..1314 934..17 4565 99.8 Minus
CG11100-PC 1119 Mes2-RC 202..1119 934..17 4565 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RC 2208 CG11100-RC 433..1351 934..16 4580 99.9 Minus
Mes2-RB 2302 CG11100-RB 527..1445 934..16 4580 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22950532..22951391 875..16 4300 100 Minus
3L 28110227 3L 22946512..22946571 934..875 285 98.3 Minus
Blast to na_te.dros performed on 2015-02-11 10:40:08 has no hits.

BS09285.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:01 Download gff for BS09285.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-PB 393..1314 17..938 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:07 Download gff for BS09285.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11100-PC 198..1119 17..938 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:28 Download gff for BS09285.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 523..1449 13..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:44 Download gff for BS09285.3prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 523..1449 13..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:44 Download gff for BS09285.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22946508..22946570 876..938 95 -> Minus
3L 22950532..22951395 13..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:28 Download gff for BS09285.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22939608..22939670 876..938 95 -> Minus
arm_3L 22943632..22944495 13..875 99   Minus

BS09285.5prime Sequence

880 bp (798 high quality bases) assembled on 2006-01-28

> BS09285.5prime
GAAGTTATCAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCA
CCCACTCGCTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGAC
ATGAAGCCCAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCC
CTCTCAGAAGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGA
AGCTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTC
CCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACAT
AGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGT
CCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGC
AATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCG
CGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCC
TGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGT
AACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTC
CTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCA
ATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTG
GATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTC
CGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTC
GGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAG
GACATGGACGACAGCTCGATACGCAGCGGG

BS09285.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11100-PB 1314 Mes2-RB 1..864 17..880 4295 99.8 Plus
CG11100-PC 1119 Mes2-RC 1..669 212..880 3320 99.8 Plus
CG11100-PA 513 Mes2-RA 1..154 17..170 770 100 Plus
CG11100-PA 513 Mes2-RA 484..513 171..200 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RB 2302 CG11100-RB 131..994 17..880 4305 99.9 Plus
Mes2-RC 2208 CG11100-RC 191..900 171..880 3535 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22950532..22950940 472..880 2030 99.8 Plus
3L 28110227 3L 22946270..22946571 171..472 1510 100 Plus
3L 28110227 3L 22945787..22945940 17..170 770 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:08:38 has no hits.

BS09285.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:02 Download gff for BS09285.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-PB 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:09 Download gff for BS09285.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11100-PB 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:18:37 Download gff for BS09285.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 124..994 9..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:25 Download gff for BS09285.5prime
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 124..994 9..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:25 Download gff for BS09285.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22950532..22950940 472..880 99   Plus
3L 22945780..22945940 9..170 97 -> Plus
3L 22946270..22946570 171..471 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:18:37 Download gff for BS09285.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22938880..22939040 9..170 97 -> Plus
arm_3L 22939370..22939670 171..471 100 -> Plus
arm_3L 22943632..22944040 472..880 99   Plus

BS09285.complete Sequence

1346 bp assembled on 2008-08-15

GenBank Submission: KX804697

> BS09285.complete
GAAGTTATCAGTCGACATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCA
CCCACTCGCTGCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGAC
ATGAAGCCCAAGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCC
CTCTCAGAAGATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGA
AGCTCATCCAAATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTC
CCGAATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACAT
AGGCCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGT
CCTTGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGC
AATGGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCG
CGATGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCC
TGACAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGT
AACAGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTC
CTTTAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCA
ATGTAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTG
GATCTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTC
CGGCGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTC
GGGTGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAA
GACATGGACGACAGCTCGATACGCAGCGGGGACGAAGATATCGCCCACGC
ATCCGACGTAGTGGAGGAGTTGGATGCCATCGATGCAGATTTCCCTTATC
CTCTGATTCTGGATTCCAACTCACGCGGTAGCCCCAATGTTGGTGTGGAC
GATGTGGTCATGTCCCGCAAGCTTCGCCGTAACGTCGATCAAGATGTTTT
GGAGGAAGGAAACGGTCACGGCGATGCGGTTATCGATGGTGACGACTACG
AAGAACAAATGCTGCAACAGCACCGCCATCTCCGGCAGCAACAGGGCGTC
GCAAGCGGAGGGTTGGATCTGCCGCCCCCACAAACTGTACGTGAGGTTTT
GAACTCCAAGTTCTGCGGCTTTATTTCAGCCAAGCTAAACAGCATGGAGG
ACTCGGACGCGGACAATTTAATGAATCGCATTCTTCTCTTACTGGTTCAA
GTGCAGCAGTGCGAAGGGTCCACGAAATAGAAGCTATCTAGACCAT

BS09285.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RB 1314 CG11100-PB 1..1314 17..1330 6570 100 Plus
Mes2-RC 1119 CG11100-PC 1..1119 212..1330 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RB 2302 CG11100-RB 131..1445 17..1331 6575 100 Plus
Mes2-RC 2208 CG11100-RC 191..1351 171..1331 5805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22950532..22951391 472..1331 4300 100 Plus
3L 28110227 3L 22946270..22946571 171..472 1510 100 Plus
3L 28110227 3L 22945787..22945940 17..170 770 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:16:03 has no hits.

BS09285.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:20 Download gff for BS09285.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 122..1447 9..1334 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:16:49 Download gff for BS09285.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 131..1438 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:34 Download gff for BS09285.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 129..1436 17..1324 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:29 Download gff for BS09285.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 131..1438 17..1324 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:29 Download gff for BS09285.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22945787..22945940 17..170 100 -> Plus
3L 22946270..22946570 171..471 100 -> Plus
3L 22950532..22951384 472..1324 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:16:49 Download gff for BS09285.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22938887..22939040 17..170 100 -> Plus
arm_3L 22939370..22939670 171..471 100 -> Plus
arm_3L 22943632..22944484 472..1324 100   Plus

BS09285.pep Sequence

Translation from 16 to 1329

> BS09285.pep
MAPVSGCLPTATHSLQDMSAAAAAIALDMKPKLEPHPLAAATAMPSQKIK
KLVRRNASDKLKLIQMVHDNPILWDSRLPNFKGAEEEKNRAWEHIGREFN
APGRRVARAFKSLRESYRRELAHVKLMGNGFKPKWSLYEAMDFLRDVIRE
RKGASHATDLSLTTYGHINNNNNNNNNSNSLAAGGKAMTLKLSNSFNESA
SVLNLSKCSSLNVSDDHYYCDYYVKPELDLSVGGGAGSSTSGSSSGGGPL
PLPAHQAHNDSRVSSTRNEQRAQHHSYEDMDDSSIRSGDEDIAHASDVVE
ELDAIDADFPYPLILDSNSRGSPNVGVDDVVMSRKLRRNVDQDVLEEGNG
HGDAVIDGDDYEEQMLQQHRHLRQQQGVASGGLDLPPPQTVREVLNSKFC
GFISAKLNSMEDSDADNLMNRILLLLVQVQQCEGSTK*

BS09285.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-PB 437 CG11100-PB 1..437 1..437 2269 100 Plus
Mes2-PC 372 CG11100-PC 1..372 66..437 1948 100 Plus
CG12768-PD 429 CG12768-PD 5..143 55..182 296 46.8 Plus
CG12768-PC 429 CG12768-PC 5..143 55..182 296 46.8 Plus
CG12768-PB 429 CG12768-PB 5..143 55..182 296 46.8 Plus