Clone Sequence Records
BS09286.complete Sequence
1889 bp assembled on 2009-12-07
GenBank Submission: KX800535
> BS09286.complete
GAAGTTATCAGTCGACATGGACCGGGCTAGTCTATATTTTATGAGCAAGG
ATGATAAGAACACCTTCGACTTCGACGAGACCTTACCTTCGCTCCCGCTG
CCAGAGCTTAGGGACACCATGGAGCGCTACTACAGCTGCATCCAGCCATT
CGGGACCAAGGAGGAGTTGGCCCAGGCTCGCAAGACTATTGATGAGTTCC
AAAACGGAGTGGGAGCCCAGCTGCACGAACAGCTCAAGAAGCGGGCGGCC
GGCATGAGGAACTGGCTGGGCACCTGGTGGGAGGACTACGGATATCACCT
GATTCGGATGCCGCTGCTGCCCTACCAGCTCATGGTCATGCCCTCGCAAT
TGGAAATGGTGGGCGTGCCGGAGACACCGGAGTACATGCTGAAGAGTCTG
GCGCGCCACATTCACCACTCGCTGGAGTTTTGGGATCTGACTAGAAAGTC
CAGCATCAAACCGCTCTCCTCGAACGGCGGTAAAATAAAGTACTCCTCCG
CGCTGTACAAGCACTTCTTCTCCACGTGCCGTGTGCCAGGCGAGGAGCAG
GATCATATAGAGAAGCATTTTCTCACCAAGGATGAGGGCAAAACGCCGAG
TCACATGCTTATTTCCGGCAAGGGACGTCAGTTCATCTTCGATTGTGTGC
ACGAGGACGACACTATCCTATCGGCTCCCGAAATCCTCGTGGCCCTGCAA
AGAGTGCGCAGCATCCTCGACTACGAGCCGTTGGGCGATTGTGTGCCCAC
CCTGAGCCATGACGAACGCTCCACGTGGGCACGCAACCGCAACCGTTTGA
GGGAAATCTCAGTTGCAAACAAGGAGACGCTGCTTCTGGTGGAGAGCGCA
TGTATGGAGATCTGCTGGTACGAGCAATCGCCCAAGGACTACGAGGAGTC
CTGCCAGCTGGGTCTCTACGGTGATCTCCATTCCCGCTGGGCAGACCGCA
GCAGCAGCATCATCGCCTTCCGCAACGGACGCTGCAACTGGACGGGTGAG
CACAGCTGCTACGATGGCACGGTCAGCATAAGTTACGCCACATTCATGCA
ACTGAGCTTCCTGGAGGTGCCAGAGCCAGACTGGGCAGAGGCCGAAAAAG
GCAATGTTTTGGAGGTCAAGGAGCTGCACTTCCAGCTGGATGATACGCTC
AAGAACGAGATCAAGCGCGTGCAGAAGGATATTGATGACAGGGGTATTGA
CGTTACTGTGACCTTCACTGCGTTCGATGACTACGGCAAGGACTTTATGA
AAACCCATCGACTGCATCCAGACTCCTTTGTTCAGGTGGTCATGCAGTGG
GCCTACTACCAAATGCATAAAGAAATTGCTCCCACATATGAGACTGCTCT
GATGCGACAGTACTACAATGGACGAACAGAGACCCTGCGATCATGCACTT
CCGCTGTGGCTGAATTCCTGAGGGCGTCATCCAACAAGCAGGTTGGCGAT
ATGTCACTGGCCAGGGCGTTCCGTAGGGCAGTCGATGAGCACAAGCACTT
CATGAACGAGGCGCGCAAGGGACACGGCATCGATAGGCACTTGTTTGGCC
TGTGGTGCGCGGCGTATGAAAGCAAAATGGACATTCCCGCCTTCTACGAC
GATCCGATGTACACCAAGAGCGGCGGAGGAGGTAACTTTGTGCTCTCGTC
CAGCACGCTGGGCTTCACGGCCAACGTTGGTTTCGTGGCGCCCATGGTCT
TCGATGGCTATGGCGTCTTTTACTCCATCACCTCGGAAGCTGTGTTCATT
AATACCACCGCCTATCGGGATAGCCTAAAGACAAGCGCTCGCAAGTTCAA
CGACATTTTCAAGGACTCATTCCGCCGCATCAGCGTTCTCCTGGAACAAT
TGGCCAAGGAATCCAAGCTATGAAAGCTTTCTAGACCAT
BS09286.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 1857 | CG12428-PB | 1..1857 | 17..1873 | 9255 | 99.9 | Plus |
| CG12428-RA | 1857 | CG12428-PA | 1..1857 | 17..1873 | 9255 | 99.9 | Plus |
| CG12428-RE | 1857 | CG12428-PE | 1..1857 | 17..1873 | 9255 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 2409 | CG12428-RB | 207..2066 | 16..1875 | 9270 | 99.9 | Plus |
| CG12428-RA | 2357 | CG12428-RA | 155..2014 | 16..1875 | 9270 | 99.9 | Plus |
| CG12428-RE | 2413 | CG12428-RE | 211..2070 | 16..1875 | 9270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27704589..27705391 | 1193..391 | 4015 | 100 | Minus |
| 3R | 32079331 | 3R | 27703913..27704329 | 1740..1324 | 2085 | 100 | Minus |
| 3R | 32079331 | 3R | 27705464..27705842 | 394..16 | 1865 | 99.5 | Minus |
| 3R | 32079331 | 3R | 27703722..27703856 | 1875..1741 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 27704390..27704521 | 1323..1192 | 660 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 02:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2415 | 941..1009 | 117 | 65.2 | Plus |
| R1-2 | 3216 | R1-2 R1-2 3216bp | 1736..1797 | 797..859 | 115 | 69.2 | Plus |
BS09286.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:51 Download gff for
BS09286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RA | 156..2011 | 17..1872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:54 Download gff for
BS09286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 212..2067 | 17..1872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:07 Download gff for
BS09286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RA | 156..2011 | 17..1872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:06 Download gff for
BS09286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 212..2067 | 17..1872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:06 Download gff for
BS09286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27703725..27703856 | 1741..1872 | 100 | <- | Minus |
| 3R | 27703913..27704329 | 1324..1740 | 100 | <- | Minus |
| 3R | 27704390..27704520 | 1193..1323 | 100 | <- | Minus |
| 3R | 27704590..27705387 | 395..1192 | 100 | <- | Minus |
| 3R | 27705464..27705841 | 17..394 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:54 Download gff for
BS09286.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23529447..23529578 | 1741..1872 | 100 | <- | Minus |
| arm_3R | 23529635..23530051 | 1324..1740 | 100 | <- | Minus |
| arm_3R | 23530312..23531109 | 395..1192 | 100 | <- | Minus |
| arm_3R | 23530112..23530242 | 1193..1323 | 100 | <- | Minus |
| arm_3R | 23531186..23531563 | 17..394 | 99 | | Minus |
BS09286.3prime Sequence
970 bp (898 high quality bases) assembled on 2006-01-29
> BS09286.3prime
ATGGTCTAGAAAGCTTTCATAGCTTGGATTCCTTGGCCAATTGTTCCAGG
AGAACGCTGATGCGGCGGAATGAGTCCTTGAAAATGTCGTTGAACTTGCG
AGCGCTTGTCTTTAGGCTATCCCGATAGGCGGTGGTATTAATGAACACAG
CTTCCGAGGTGATGGAGTAAAAGACGCCATAGCCATCGAAGACCATGGGC
GCCACGAAACCAACGTTGGCCGTGAAGCCCAGCGTGCTGGACGAGAGCAC
AAAGTTACCTCCTCCGCCGCTCTTGGTGTACATCGGATCGTCGTAGAAGG
CGGGAATGTCCATTTTGCTTTCATACGCCGCGCACCACAGGCCAAACAAG
TGCCTATCGATGCCGTGTCCCTTGCGCGCCTCGTTCATGAAGTGCTTGTG
CTCATCGACTGCCCTACGGAACGCCCTGGCCAGTGACATATCGCCAACCT
GCTTGTTGGATGACGCCCTCAGGAATTCAGCCACAGCGGAAGTGCATGAT
CGCAGGGTCTCTGTTCGTCCATTGTAGTACTGTCGCATCAGAGCAGTCTC
ATATGTGGGAGCAATTTCTTTATGCATTTGGTAGTAGGCCCACTGCATGA
CCACCTGAACAAAGGAGTCTGGATGCAGTCGATGGGTTTTCATAAAGTCC
TTGCCGTAGTCATCGAACGCAGTGAAGGTCACAGTAACGTCAATACCCCT
GTCATCAATATCCTTCTGCACGCGCTTGATCTCGTTCTTGAGCGTATCAT
CCAGCTGGAAGTGCAGCTCCTTGACCTCCAAAACATTGCCTTTTTCGGCC
TCTGCCCAGTCTGGCTCTGGCACCTCCAGGAAGCTCAGTTGCATGAATGT
GGCGTAACTTATGCTGACCGTGCCATCGTAGCAGCTGTGCTCACCCGTCC
AGTTGCAGCGTCCGTTGCGGAAGGCGATGATGCTGCTGCTGCGGTCTGCC
CAGCGGGAATGGAGATCACC
BS09286.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-PD | 1857 | CG12428-RD | 904..1857 | 970..17 | 4770 | 100 | Minus |
| CG12428-PE | 1857 | CG12428-RE | 904..1857 | 970..17 | 4770 | 100 | Minus |
| CG12428-PA | 1857 | CG12428-RA | 904..1857 | 970..17 | 4770 | 100 | Minus |
| CG12428-PC | 1857 | CG12428-RC | 904..1857 | 970..17 | 4770 | 100 | Minus |
| CG12428-PB | 1857 | CG12428-RB | 904..1857 | 970..17 | 4770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:40:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 2409 | CG12428-RB | 1111..2066 | 970..15 | 4780 | 100 | Minus |
| CG12428-RA | 2357 | CG12428-RA | 1059..2014 | 970..15 | 4780 | 100 | Minus |
| CG12428-RE | 2413 | CG12428-RE | 1115..2070 | 970..15 | 4780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27703913..27704329 | 150..566 | 2085 | 100 | Plus |
| 3R | 32079331 | 3R | 27704589..27704862 | 697..970 | 1370 | 100 | Plus |
| 3R | 32079331 | 3R | 27703722..27703856 | 15..149 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 27704390..27704521 | 567..698 | 660 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2415 | 949..881 | 117 | 65.2 | Minus |
BS09286.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:04 Download gff for
BS09286.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-PD | 904..1857 | 17..970 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:10 Download gff for
BS09286.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-PB | 904..1857 | 17..970 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:51:38 Download gff for
BS09286.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 1115..2081 | 6..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:19 Download gff for
BS09286.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 1115..2081 | 6..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:19 Download gff for
BS09286.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27704590..27704862 | 698..970 | 100 | | Plus |
| 3R | 27703711..27703856 | 6..149 | 97 | <- | Plus |
| 3R | 27703913..27704329 | 150..566 | 100 | <- | Plus |
| 3R | 27704390..27704520 | 567..697 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:51:38 Download gff for
BS09286.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23529433..23529578 | 6..149 | 97 | <- | Plus |
| arm_3R | 23529635..23530051 | 150..566 | 100 | <- | Plus |
| arm_3R | 23530112..23530242 | 567..697 | 100 | <- | Plus |
| arm_3R | 23530312..23530584 | 698..970 | 100 | | Plus |
BS09286.5prime Sequence
937 bp (889 high quality bases) assembled on 2006-01-28
> BS09286.5prime
GAAGTTATCAGTCGACATGGACCGGGCTAGTCTATATTTTATGAGCAAGG
ATGATAAGAACACCTTCGACTTCGACGAGACCTTACCTTCGCTCCCGCTG
CCAGAGCTTAGGGACACCATGGAGCGCTACTACAGCTGCATCCAGCCATT
CGGGACCAAGGAGGAGTTGGCCCAGGCTCGCAAGACTATTGATGAGTTCC
AAAACGGAGTGGGAGCCCAGCTGCACGAACAGCTCAAGAAGCGGGCGGCC
GGCATGAGGAACTGGCTGGGCACCTGGTGGGAGGACTACGGATATCACCT
GATTCGGATGCCGCTGCTGCCCTACCAGCTCATGGTCATGCCCTCGCAAT
TGGAAATGGTGGGCGTGCCGGAGACACCGGAGTACATGCTGAAGAGTCTG
GCGCGCCACATTCACCACTCGCTGGAGTTTTGGGATCTGACTAGAAAGTC
CAGCATCAAACCGCTCTCCTCGAACGGCGGTAAAATAAAGTACTCCTCCG
CGCTGTACAAGCACTTCTTCTCCACGTGCCGTGTGCCAGGCGAGGAGCAG
GATCATATAGAGAAGCATTTTCTCACCAAGGATGAGGGCAAAACGCCGAG
TCACATGCTTATTTCCGGCAAGGGACGTCAGTTCATCTTCGATTGTGTGC
ACGAGGACGACACTATCCTATCGGCTCCCGAAATCCTCGTGGCCCTGCAA
AGAGTGCGCAGCATCCTCGACTACGAGCCGTTGGGCGATTGTGTGCCCAC
CCTGAGCCATGACGAACGCTCCACGTGGGCACGCAACCGCAACCGTTTGA
GGGAAATCTCAGTTGCAACAAGGAGACGCTGCTTCTGGTGGAGAGCGCAT
GTATGGAGATCTGCTGGTACGAGCAATCGCCCAAGGACTACGAGGAGTCC
TGCCAGCTGGGTCTCTACGGTGATCTCCATTCCCGCT
BS09286.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-PD | 1857 | CG12428-RD | 1..802 | 17..818 | 3960 | 99.7 | Plus |
| CG12428-PE | 1857 | CG12428-RE | 1..802 | 17..818 | 3960 | 99.7 | Plus |
| CG12428-PA | 1857 | CG12428-RA | 1..802 | 17..818 | 3960 | 99.7 | Plus |
| CG12428-PC | 1857 | CG12428-RC | 1..802 | 17..818 | 3960 | 99.7 | Plus |
| CG12428-PB | 1857 | CG12428-RB | 1..802 | 17..818 | 3960 | 99.7 | Plus |
| CG12428-PD | 1857 | CG12428-RD | 802..922 | 817..937 | 605 | 100 | Plus |
| CG12428-PE | 1857 | CG12428-RE | 802..922 | 817..937 | 605 | 100 | Plus |
| CG12428-PA | 1857 | CG12428-RA | 802..922 | 817..937 | 605 | 100 | Plus |
| CG12428-PC | 1857 | CG12428-RC | 802..922 | 817..937 | 605 | 100 | Plus |
| CG12428-PB | 1857 | CG12428-RB | 802..922 | 817..937 | 605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-RB | 2409 | CG12428-RB | 207..1129 | 16..937 | 4560 | 99.7 | Plus |
| CG12428-RA | 2357 | CG12428-RA | 155..1077 | 16..937 | 4560 | 99.7 | Plus |
| CG12428-RE | 2413 | CG12428-RE | 211..1133 | 16..937 | 4560 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27704844..27705391 | 937..391 | 2690 | 99.8 | Minus |
| 3R | 32079331 | 3R | 27705464..27705842 | 394..16 | 1865 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:54:48 has no hits.
BS09286.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:05 Download gff for
BS09286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-PE | 1..922 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:12 Download gff for
BS09286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-PE | 1..922 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:21 Download gff for
BS09286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 208..1133 | 9..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:34:11 Download gff for
BS09286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12428-RE | 208..1133 | 9..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:34:11 Download gff for
BS09286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27704844..27705387 | 395..937 | 99 | <- | Minus |
| 3R | 27705464..27705845 | 9..394 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:21 Download gff for
BS09286.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23530566..23531109 | 395..937 | 99 | <- | Minus |
| arm_3R | 23531186..23531567 | 9..394 | 98 | | Minus |
BS09286.pep Sequence
Translation from 16 to 1872
> BS09286.pep
MDRASLYFMSKDDKNTFDFDETLPSLPLPELRDTMERYYSCIQPFGTKEE
LAQARKTIDEFQNGVGAQLHEQLKKRAAGMRNWLGTWWEDYGYHLIRMPL
LPYQLMVMPSQLEMVGVPETPEYMLKSLARHIHHSLEFWDLTRKSSIKPL
SSNGGKIKYSSALYKHFFSTCRVPGEEQDHIEKHFLTKDEGKTPSHMLIS
GKGRQFIFDCVHEDDTILSAPEILVALQRVRSILDYEPLGDCVPTLSHDE
RSTWARNRNRLREISVANKETLLLVESACMEICWYEQSPKDYEESCQLGL
YGDLHSRWADRSSSIIAFRNGRCNWTGEHSCYDGTVSISYATFMQLSFLE
VPEPDWAEAEKGNVLEVKELHFQLDDTLKNEIKRVQKDIDDRGIDVTVTF
TAFDDYGKDFMKTHRLHPDSFVQVVMQWAYYQMHKEIAPTYETALMRQYY
NGRTETLRSCTSAVAEFLRASSNKQVGDMSLARAFRRAVDEHKHFMNEAR
KGHGIDRHLFGLWCAAYESKMDIPAFYDDPMYTKSGGGGNFVLSSSTLGF
TANVGFVAPMVFDGYGVFYSITSEAVFINTTAYRDSLKTSARKFNDIFKD
SFRRISVLLEQLAKESKL*
BS09286.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12428-PB | 618 | CG12428-PB | 1..618 | 1..618 | 3290 | 100 | Plus |
| CG12428-PA | 618 | CG12428-PA | 1..618 | 1..618 | 3290 | 100 | Plus |
| CG12428-PE | 618 | CG12428-PE | 1..618 | 1..618 | 3290 | 100 | Plus |
| CG12428-PD | 618 | CG12428-PD | 1..618 | 1..618 | 3290 | 100 | Plus |
| CG5265-PA | 643 | CG5265-PA | 35..627 | 8..610 | 517 | 27.1 | Plus |
