Clone Sequence Records
BS09296.3prime Sequence
892 bp (879 high quality bases) assembled on 2006-01-29
> BS09296.3prime
ATGGTCTAGAAAGCTTTCACTTCAGAACCTTGGCGTAGTGCTGCTTGTAC
CTGTATTTGATCCGCAACACATATCCGATAAACACGAACGAAAGCAGGTA
CAGGAACGAGCTGACGAAGTTGAACAGACCGGGATAGGTGGTCAGGGATC
GCTTATAGATGAGGGTGTACAAGGGTGCAGCCACGAACGGTGCGAATGAC
TGCAAAACATTCTTGATGGAGAAAATCTTGCCCAGATCCGAGGGAGGCAC
TATGTTCGATACTATTGTGCGGCACATGGGGCCTGAGATGGAGCGGAAGA
CGCCCAAGGTCACCGAAAGGTACATGTGCCAGGGCATCGTTGCAAAGCCC
TTGGCCAGATTATTCAGAATCTCCGAAAAGAACGCAAGCAGTGCCAGGGT
CACCACCGACAGGCGAAAGACCTTCCGCAGAATAAGGAAACCAATGAGTG
CGCCAATCATGGGCACCAGGTGGCTGACCGTTTCAAAGAATGTGTAGTCC
CGCACAGTCCAGTGGAATTTCTCGCGCACGAATAGGTACATCACTGTCAT
CACTCCATCGAATACAAAGATGGACAGAAACATGGCCAGCGTAACCAGCC
AGATGATGGCGCGCGCGTGATGATCGCGACGCTTGAAGCAGGTGCTGATC
ATGTCCCTGATGTGTACCATACTGAACAGACCCGCCTTCTTGGCCTGCTC
TTCCGCCTCCTGGCGCTTGCGCTCCTCCGCCTTCTGTGGCAGCCGCTCCA
CGTACTTCGCCAACAGGTCGTCGTCGAAGCTCATCGCAGGCGTTGCCGGT
GTGGGCAGCTCCATCCTCTTATCCTTCCCTGGCTCCTCATCGTTCATGAA
GTTCGGCGGGCAGTCAATCGCAACGCGGTCCCACTGGAGGTC
BS09296.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-PA | 1320 | CG8008-RA | 445..1320 | 892..17 | 4305 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-RB | 2680 | CG8008-RB | 1100..1975 | 892..17 | 4335 | 99.7 | Minus |
| CG8008-RA | 2748 | CG8008-RA | 1168..2043 | 892..17 | 4335 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9159533..9159866 | 559..892 | 1655 | 99.7 | Plus |
| 2R | 25286936 | 2R | 9159077..9159269 | 231..423 | 935 | 99 | Plus |
| 2R | 25286936 | 2R | 9159334..9159473 | 420..559 | 700 | 100 | Plus |
| 2R | 25286936 | 2R | 9158774..9158883 | 75..184 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 9158612..9158670 | 17..75 | 295 | 100 | Plus |
| 2R | 25286936 | 2R | 9158947..9158995 | 184..232 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:44:05 has no hits.
BS09296.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:17 Download gff for
BS09296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-PA | 445..1320 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:28 Download gff for
BS09296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-PA | 445..1320 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:12 Download gff for
BS09296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 1168..2046 | 13..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:47 Download gff for
BS09296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 1168..2046 | 13..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:47 Download gff for
BS09296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9159533..9159866 | 559..892 | 99 | | Plus |
| 2R | 9158609..9158669 | 13..74 | 96 | <- | Plus |
| 2R | 9158774..9158882 | 75..183 | 100 | <- | Plus |
| 2R | 9158947..9158994 | 184..231 | 100 | <- | Plus |
| 2R | 9159078..9159267 | 232..421 | 98 | <- | Plus |
| 2R | 9159336..9159472 | 422..558 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:12 Download gff for
BS09296.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5046114..5046174 | 13..74 | 96 | <- | Plus |
| arm_2R | 5046279..5046387 | 75..183 | 100 | <- | Plus |
| arm_2R | 5046452..5046499 | 184..231 | 100 | <- | Plus |
| arm_2R | 5046583..5046772 | 232..421 | 98 | <- | Plus |
| arm_2R | 5046841..5046977 | 422..558 | 100 | <- | Plus |
| arm_2R | 5047038..5047371 | 559..892 | 99 | | Plus |
BS09296.5prime Sequence
904 bp (829 high quality bases) assembled on 2006-01-29
> BS09296.5prime
GAAGTTATCAGTCGACATGATAGGATTCTCGGCTTCATTCCTCATGATGG
CCGCCATCTGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTAC
ATCATGGCTGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTC
GGTGGCCGCCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTC
CGTACCGCATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGT
GGATCTCTGCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGAC
CATTGGGATTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCT
TCTTTGTGCCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAAT
GCGATAACTGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTAT
AACCGCCTGTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGA
ACTTCATGAACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCC
ACACCGGCNACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTA
CGTGGAGCGGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGG
AAGAGCAGGCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCAGGGAC
ATGATCAGCACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCAT
CTGGCTGGTTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAG
TGATGACAGTGATGTACCTATTCGTGCGCGAGAAATCCACTGGACTGTGC
GGGACTACACATTCTTTGAAACGGTCAGCCACCTGGTGCCCATGATTGGC
GCAC
BS09296.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-PA | 1320 | CG8008-RA | 1..820 | 17..836 | 4006 | 99.5 | Plus |
| CG8008-PA | 1320 | CG8008-RA | 821..889 | 836..904 | 345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:53:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-RB | 2680 | CG8008-RB | 655..1544 | 16..904 | 4369 | 99.4 | Plus |
| CG8008-RA | 2748 | CG8008-RA | 723..1612 | 16..904 | 4369 | 99.4 | Plus |
| CG15553-RC | 1784 | CG15553-RC | 511..668 | 66..223 | 265 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9159533..9160305 | 794..22 | 3809 | 99.5 | Minus |
| 2R | 25286936 | 2R | 9159362..9159473 | 904..794 | 510 | 99.1 | Minus |
| 3R | 32079331 | 3R | 31100366..31100486 | 186..66 | 245 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 01:53:54 has no hits.
BS09296.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:18 Download gff for
BS09296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-PA | 1..889 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:29 Download gff for
BS09296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-PA | 1..889 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:41 Download gff for
BS09296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1612 | 12..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:59 Download gff for
BS09296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1612 | 12..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:59 Download gff for
BS09296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9159362..9159472 | 795..904 | 99 | <- | Minus |
| 2R | 9159533..9160305 | 22..794 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:41 Download gff for
BS09296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5046867..5046977 | 795..904 | 99 | <- | Minus |
| arm_2R | 5047038..5047810 | 22..794 | 99 | | Minus |
BS09296.complete Sequence
1352 bp assembled on 2008-08-15
GenBank Submission: FJ638823
> BS09296.complete
GAAGTTATCAGTCGACATGATAGGATTCTCGGCTTCATTCCTCATGATGG
CCGCCATCTGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTAC
ATCATGGCTGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTC
GGTGGCCGCCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTC
CGTACCGCATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGT
GGATCTCTGCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGAC
CATTGGGATTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCT
TCTTTGTGCCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAAT
GCGATAACTGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTAT
AACCGCCTGTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGA
ACTTCATGAACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCC
ACACCGGCAACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTA
CGTGGAGCGGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGG
AAGAGCAGGCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCAGGGAC
ATGATCAGCACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCAT
CTGGCTGGTTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAG
TGATGACAGTGATGTACCTATTCGTGCGCGAGAAATTCCACTGGACTGTG
CGGGACTACACATTCTTTGAAACGGTCAGCCACCTGGTGCCCATGATTGG
CGCACTCATTGGTTTCCTTATTCTGCGGAAGGTCTTTCGCCTGTCGGTGG
TGACCCTGGCACTGCTTGCGTTCTTTTCGGAGATTCTGAATAATCTGGCC
AAGGGCTTTGCAACGATGCCCTGGCACATGTACCTTTCGGTGACCTTGGG
CGTCTTCCGCTCCATCTCAGGCCCCATGTGCCGCACAATAGTATCGAACA
TAGTGCCTCCCTCGGATCTGGGCAAGATTTTCTCCATCAAGAATGTTTTG
CAGTCATTCGCACCGTTCGTGGCTGCACCCTTGTACACCCTCATCTATAA
GCGATCCCTGACCACCTATCCCGGTCTGTTCAACTTCGTCAGCTCGTTCC
TGTACCTGCTTTCGTTCGTGTTTATCGGATATGTGTTGCGGATCAAATAC
AGGTACAAGCAGCACTACGCCAAGGTTCTGAAGTGAAAGCTTTCTAGACC
AT
BS09296.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-RB | 1701 | CG8008-PB | 381..1701 | 16..1336 | 6530 | 99.6 | Plus |
| CG8008-RA | 1320 | CG8008-PA | 1..1320 | 17..1336 | 6525 | 99.6 | Plus |
| CG15553-RC | 1566 | CG15553-PC | 416..573 | 66..223 | 265 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-RB | 2680 | CG8008-RB | 655..1975 | 16..1336 | 6530 | 99.6 | Plus |
| CG8008-RA | 2748 | CG8008-RA | 723..2043 | 16..1336 | 6530 | 99.6 | Plus |
| CG15553-RC | 1784 | CG15553-RC | 511..668 | 66..223 | 265 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9159533..9160305 | 794..22 | 3820 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9159077..9159269 | 1122..930 | 935 | 99 | Minus |
| 2R | 25286936 | 2R | 9159334..9159473 | 933..794 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 9158774..9158883 | 1278..1169 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 9158612..9158670 | 1336..1278 | 295 | 100 | Minus |
| 2R | 25286936 | 2R | 9158947..9158995 | 1169..1121 | 245 | 100 | Minus |
| 3R | 32079331 | 3R | 31100366..31100486 | 186..66 | 245 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:23:40 has no hits.
BS09296.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:02 Download gff for
BS09296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RB | 652..1977 | 12..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:28 Download gff for
BS09296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 724..2042 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:48 Download gff for
BS09296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RB | 655..1973 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:35 Download gff for
BS09296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 724..2042 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:35 Download gff for
BS09296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9159336..9159472 | 795..931 | 100 | <- | Minus |
| 2R | 9158774..9158882 | 1170..1278 | 100 | <- | Minus |
| 2R | 9158947..9158994 | 1122..1169 | 100 | <- | Minus |
| 2R | 9159078..9159267 | 932..1121 | 98 | <- | Minus |
| 2R | 9158613..9158669 | 1279..1335 | 100 | <- | Minus |
| 2R | 9159533..9160307 | 17..794 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:28 Download gff for
BS09296.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5046118..5046174 | 1279..1335 | 100 | <- | Minus |
| arm_2R | 5046279..5046387 | 1170..1278 | 100 | <- | Minus |
| arm_2R | 5046452..5046499 | 1122..1169 | 100 | <- | Minus |
| arm_2R | 5046583..5046772 | 932..1121 | 98 | <- | Minus |
| arm_2R | 5046841..5046977 | 795..931 | 100 | <- | Minus |
| arm_2R | 5047038..5047812 | 17..794 | 99 | | Minus |
BS09296.pep Sequence
Translation from 16 to 1335
> BS09296.pep
MIGFSASFLMMAAICELSSYYVVNPWWYIMAAVPHSLLGGNCVFSVAAFC
FISDITDCKSRPYRMIFMESLFFIGLTSGSLLSSFVYAAVGSAATIGISG
CIVTFATLFIIFFVPESLHFHKEQETKNAITANVEKECIDSKVPITACDL
QLDRVAIDCPPNFMNDEEPGKDKRMELPTPATPAMSFDDDLLAKYVERLP
QKAEERKRQEAEEQAKKAGLFSMVHIRDMISTCFKRRDHHARAIIWLVTL
AMFLSIFVFDGVMTVMYLFVREKFHWTVRDYTFFETVSHLVPMIGALIGF
LILRKVFRLSVVTLALLAFFSEILNNLAKGFATMPWHMYLSVTLGVFRSI
SGPMCRTIVSNIVPPSDLGKIFSIKNVLQSFAPFVAAPLYTLIYKRSLTT
YPGLFNFVSSFLYLLSFVFIGYVLRIKYRYKQHYAKVLK*
BS09296.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-PB | 566 | CG8008-PB | 128..566 | 1..439 | 2272 | 100 | Plus |
| CG8008-PA | 439 | CG8008-PA | 1..439 | 1..439 | 2272 | 100 | Plus |
| CG15553-PC | 521 | CG15553-PC | 123..521 | 1..439 | 1202 | 55.5 | Plus |
| CG30344-PA | 507 | CG30344-PA | 292..493 | 226..427 | 484 | 40.1 | Plus |
| CG8046-PB | 388 | CG8046-PB | 172..388 | 226..439 | 444 | 39.6 | Plus |
| CG30344-PA | 507 | CG30344-PA | 157..273 | 3..119 | 213 | 29.1 | Plus |
