Clone Sequence Records
BS09301.3prime Sequence
936 bp (894 high quality bases) assembled on 2006-01-29
> BS09301.3prime
ATGGTCTTGAAAGCTTCTACTTGCACATGGTATGACCGTCGCCCAAGCAG
GATGCGTAGGCCATCATATGCGGAATGGTGCTCTGTTCGTAGACTCCGGT
GAACAGGTGCGCCCAGGGACCCAACGCGTAGACGGGCACATCGTCGCCTC
CGTGCGAGTCCATGTCGATGGGGACACCCGAGGGAAACTCATCGTCGTGG
TCTCCCTTCACCACCGTGGTGGGATCCTTGCGCTCCATCGTCTCCGCGTC
GTAGAAATTCTCGTAACTCGGTCCGTTGGCGTAGCTTAGAACCATGTATG
GTTTGCCATCGTGTCCATTTACTGGGGTCTTTCCAAATACATCAGATCCA
CGGTACGAGTATCCTGCGTAGGTGAACACATGTGAGTGATCGGCGGTGAC
CACCAGCAAGGTGTCATCCTCGCTGGTCAGCTCCTGGGCAGCGGCGATGG
CCTTGGAGAACTCAATAGTTTCATTCAGAGCCATACGCGCCTGGTTGATG
TGGTGGGCCTGGTCGATGCGACCGCCCTCGATGAAGAGGAAGTAGCCCTG
CTCGTTCTGGCTCATGTACTCGATGGCCTTGCGGGTCATCTGCTCCAAAG
TGGGCTGGCTGCTCTCTGTTGTGGTCTCCATGAGGTACTGCAGATGGTCG
TCGTTGAAGAGACCGAGGAGGCGATCCGTTTTGGTGACATCCACGGCGGC
CAACTCTGCGGCGGTGGTCACATAGACATTATTTTCGCTTGCTGATTTAA
ATTCATCGATAAGGTTAAGTCCATCGGTACGCTTGCCCCAGGATTCCAGA
CTGGAGTCGACAAAGTGCTTGCGTCCGCCGCCCATGATCACCTTCAGCTT
GCTGCCCACCTCGCCGCGGGCCAGTTGATAGGCAATGTCATTGATTCCGG
AGCCTGCTCCACAGTCGGTAGCCACCTCCGCATCGT
BS09301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10827-PA | 1569 | CG10827-RA | 650..1569 | 936..17 | 4600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10827-RA | 1674 | CG10827-RA | 666..1585 | 936..17 | 4600 | 100 | Minus |
CG5150-RB | 1881 | CG5150-RB | 1467..1576 | 148..39 | 220 | 80 | Minus |
CG5150-RA | 1796 | CG5150-RA | 1467..1576 | 148..39 | 220 | 80 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21005745..21006325 | 356..936 | 2905 | 100 | Plus |
3R | 32079331 | 3R | 21005249..21005588 | 17..356 | 1700 | 100 | Plus |
3L | 28110227 | 3L | 5597008..5597117 | 148..39 | 220 | 80 | Minus |
Blast to na_te.dros performed on 2015-01-31 12:37:00 has no hits.
BS09301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:19 Download gff for
BS09301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-PA | 650..1569 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:30 Download gff for
BS09301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-PA | 650..1569 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:02:03 Download gff for
BS09301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-RA | 666..1585 | 17..936 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:06:30 Download gff for
BS09301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-RA | 666..1585 | 17..936 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:06:30 Download gff for
BS09301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21005249..21005587 | 17..355 | 100 | <- | Plus |
3R | 21005745..21006325 | 356..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:02:03 Download gff for
BS09301.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16830971..16831309 | 17..355 | 100 | <- | Plus |
arm_3R | 16831467..16832047 | 356..936 | 100 | | Plus |
BS09301.5prime Sequence
927 bp (857 high quality bases) assembled on 2006-01-29
> BS09301.5prime
GAAGTTATCAGTCGACATGTTCCGCCTGTTGAACGCACTACTGATCGCCA
TCGTGCTGGTAGCCCATCCCGCTTGGTCCGCTCCGGAATGCGGCCGTACT
CCGGAGGAGTGCAGGGAGCACAGGATGCATCCGGATATGCCGGAACCGGA
ACGACATGGCAAGGCATTCCGGGTGGTTGATGGCGAGGATACCAACGCCT
ACTGGCGCCAACAGGGAGTGCAGTTTGTCCAGCAGAAGTTGGCTTCTGAA
CCGAATAAGCGCCAGGCCAAGAATGTGATCCTCTTTCTCGGCGATGGAAT
GGGTGTGACCACCACGTCAGCGGCTCGCAATCTCTTGGGCGGCGAGGAGA
AGTCCCTGTCCTTCGAAAACTTCCCCTTCACGGGCCTCTCGAAGACCTAT
TCCGTGGATAAGATTGTGCCCGACTCCGCCTGCACGGCCACTGCCTATTT
GTGTGGCGTGAAAGGTCAGGAGGGAACTATTGGCGTGAATGGCCAGGTGC
CCCGCACCGACTGCAAGGTCATGCTGGACGAGAGCACCCACGTCGACTCC
ATTGCCAAGTGGGCCATGGAGGCGGGCAAGTGGGCGGGTCTGGTGACCAC
CACCCGCGTCACTCACGCCTCGCCTTCTGGAGTGTACGCCCACATAGCTG
AGCGCGACTGGGAGAACGATGCGGAGGTGGCTACCGACTGTGGAGCAGGC
TCCGGAATCAATGACATTGCCTATCAACTGGCCCGCGGCGAGGTGGGCAG
CAAGCTGAAGGTGATCATGGGCGGCGGACGCAAGCACTTTGTCGACTCCA
GTCTGGAATCCTGGGGCAAGCGTACCGATGGACTTAACCTTATCGATGAA
TTTAAATCAGCAAGCGAAAATAATGTCTATGTGACCACCGCCGCAGAGTT
GGGCGCCGTGGATGTCACCAAACGGAT
BS09301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10827-PA | 1569 | CG10827-RA | 1..906 | 17..922 | 4505 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10827-RA | 1674 | CG10827-RA | 17..928 | 17..927 | 4520 | 99.8 | Plus |
CG5150-RB | 1881 | CG5150-RB | 561..667 | 560..666 | 220 | 80.4 | Plus |
CG5150-RA | 1796 | CG5150-RA | 561..667 | 560..666 | 220 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21006069..21006974 | 922..17 | 4515 | 99.9 | Minus |
3L | 28110227 | 3L | 5596102..5596208 | 560..666 | 220 | 80.4 | Plus |
3L | 28110227 | 3L | 5593904..5593988 | 642..558 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:37:09 has no hits.
BS09301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:20 Download gff for
BS09301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-PA | 1..912 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:31 Download gff for
BS09301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-PA | 1..912 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:50 Download gff for
BS09301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-RA | 17..928 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:30 Download gff for
BS09301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-RA | 17..928 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:30 Download gff for
BS09301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21006063..21006974 | 17..927 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:50 Download gff for
BS09301.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16831785..16832696 | 17..927 | 99 | | Minus |
BS09301.complete Sequence
1601 bp assembled on 2008-08-15
> BS09301.complete
GAAGTTATCAGTCGACATGTTCCGCCTGTTGAACGCACTACTGATCGCCA
TCGTGCTGGTAGCCCATCCCGCTTGGTCCGCTCCGGAATGCGGCCGTACT
CCGGAGGAGTGCAGGGAGCACAGGATGCATCCGGATATGCCGGAACCGGA
ACGACATGGCAAGGCATTCCGGGTGGTTGATGGCGAGGATACCAACGCCT
ACTGGCGCCAACAGGGAGTGCAGTTTGTCCAGCAGAAGTTGGCTTCTGAA
CCGAATAAGCGCCAGGCCAAGAATGTGATCCTCTTTCTCGGCGATGGAAT
GGGTGTGACCACCACGTCAGCGGCTCGCAATCTCTTGGGCGGCGAGGAGA
AGTCCCTGTCCTTCGAAAACTTCCCCTTCACGGGCCTCTCGAAGACCTAT
TCCGTGGATAAGATTGTGCCCGACTCCGCCTGCACGGCCACTGCCTATTT
GTGTGGCGTGAAAGGTCAGGAGGGAACTATTGGCGTGAATGGCCAGGTGC
CCCGCACCGACTGCAAGGTCATGCTGGACGAGAGCACCCACGTCGACTCC
ATTGCCAAGTGGGCCATGGAGGCGGGCAAGTGGGCGGGTCTGGTGACCAC
CACCCGCGTCACTCACGCCTCGCCTTCTGGAGTGTACGCCCACATAGCTG
AGCGCGACTGGGAGAACGATGCGGAGGTGGCTACCGACTGTGGAGCAGGC
TCCGGAATCAATGACATTGCCTATCAACTGGCCCGCGGCGAGGTGGGCAG
CAAGCTGAAGGTGATCATGGGCGGCGGACGCAAGCACTTTGTCGACTCCA
GTCTGGAATCCTGGGGCAAGCGTACCGATGGACTTAACCTTATCGATGAA
TTTAAATCAGCAAGCGAAAATAATGTCTATGTGACCACCGCCGCAGAGTT
GGCCGCCGTGGATGTCACCAAAACGGATCGCCTCCTCGGTCTCTTCAACG
ACGACCATCTGCAGTACCTCATGGAGACCACAACAGAGAGCAGCCAGCCC
ACTTTGGAGCAGATGACCCGCAAGGCCATCGAGTACATGAGCCAGAACGA
GCAGGGCTACTTCCTCTTCATCGAGGGCGGTCGCATCGACCAGGCCCACC
ACATCAACCAGGCGCGTATGGCTCTGAATGAAACTATTGAGTTCTCCAAG
GCCATCGCCGCTGCCCAGGAGCTGACCAGCGAGGATGACACCTTGCTGGT
GGTCACCGCCGATCACTCACATGTGTTCACCTACGCAGGATACTCGTACC
GTGGATCTGATGTATTTGGAAAGACCCCAGTAAATGGACACGATGGCAAA
CCATACATGGTTCTAAGCTACGCCAACGGACCGAGTTACGAGAATTTCTA
CGACGCGGAGACGATGGAGCGCAAGGATCCCACCACGGTGGTGAAGGGAG
ACCACGACGATGAGTTTCCCTCGGGTGTCCCCATCGACATGGACTCGCAC
GGAGGCGACGATGTGCCCGTCTACGCGTTGGGTCCCTGGGCGCACCTGTT
CACCGGAGTCTACGAACAGAGCACCATTCCGCATATGATGGCCTACGCAT
CCTGCTTGGGCGACGGTCATACCATGTGCAAGTAGAAGCTTTCAAGACCA
T
BS09301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10827-RA | 1569 | CG10827-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
CG5150-RB | 1554 | CG5150-PB | 517..623 | 560..666 | 220 | 80.4 | Plus |
CG5150-RB | 1554 | CG5150-PB | 1423..1532 | 1454..1563 | 220 | 80 | Plus |
CG5150-RA | 1554 | CG5150-PA | 517..623 | 560..666 | 220 | 80.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10827-RA | 1674 | CG10827-RA | 17..1585 | 17..1585 | 7845 | 100 | Plus |
CG5150-RB | 1881 | CG5150-RB | 561..667 | 560..666 | 220 | 80.4 | Plus |
CG5150-RB | 1881 | CG5150-RB | 1467..1576 | 1454..1563 | 220 | 80 | Plus |
CG5150-RA | 1796 | CG5150-RA | 561..667 | 560..666 | 220 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21005745..21006974 | 1246..17 | 6150 | 100 | Minus |
3R | 32079331 | 3R | 21005249..21005588 | 1585..1246 | 1700 | 100 | Minus |
3L | 28110227 | 3L | 5596102..5596208 | 560..666 | 220 | 80.4 | Plus |
3L | 28110227 | 3L | 5597008..5597117 | 1454..1563 | 220 | 80 | Plus |
3L | 28110227 | 3L | 5593904..5593988 | 642..558 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:01:37 has no hits.
BS09301.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:46 Download gff for
BS09301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-RA | 14..1582 | 17..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:30 Download gff for
BS09301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-RA | 22..1585 | 22..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:19 Download gff for
BS09301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-RA | 19..1582 | 22..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:31 Download gff for
BS09301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10827-RA | 22..1585 | 22..1585 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:31 Download gff for
BS09301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21005249..21005587 | 1247..1585 | 100 | <- | Minus |
3R | 21005745..21006969 | 22..1246 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:30 Download gff for
BS09301.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16830971..16831309 | 1247..1585 | 100 | <- | Minus |
arm_3R | 16831467..16832691 | 22..1246 | 100 | | Minus |
BS09301.pep Sequence
Translation from 16 to 1584
> BS09301.pep
MFRLLNALLIAIVLVAHPAWSAPECGRTPEECREHRMHPDMPEPERHGKA
FRVVDGEDTNAYWRQQGVQFVQQKLASEPNKRQAKNVILFLGDGMGVTTT
SAARNLLGGEEKSLSFENFPFTGLSKTYSVDKIVPDSACTATAYLCGVKG
QEGTIGVNGQVPRTDCKVMLDESTHVDSIAKWAMEAGKWAGLVTTTRVTH
ASPSGVYAHIAERDWENDAEVATDCGAGSGINDIAYQLARGEVGSKLKVI
MGGGRKHFVDSSLESWGKRTDGLNLIDEFKSASENNVYVTTAAELAAVDV
TKTDRLLGLFNDDHLQYLMETTTESSQPTLEQMTRKAIEYMSQNEQGYFL
FIEGGRIDQAHHINQARMALNETIEFSKAIAAAQELTSEDDTLLVVTADH
SHVFTYAGYSYRGSDVFGKTPVNGHDGKPYMVLSYANGPSYENFYDAETM
ERKDPTTVVKGDHDDEFPSGVPIDMDSHGGDDVPVYALGPWAHLFTGVYE
QSTIPHMMAYASCLGDGHTMCK*
BS09301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10827-PA | 522 | CG10827-PA | 1..522 | 1..522 | 2767 | 100 | Plus |
CG5150-PB | 517 | CG5150-PB | 17..516 | 20..521 | 1516 | 56.3 | Plus |
CG5150-PA | 517 | CG5150-PA | 17..516 | 20..521 | 1516 | 56.3 | Plus |
CG10592-PA | 524 | CG10592-PA | 26..514 | 33..515 | 1104 | 46.8 | Plus |
CG1809-PA | 515 | CG1809-PA | 43..512 | 57..515 | 1093 | 50.1 | Plus |