Clone BS09301 Report

Search the DGRC for BS09301

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG10827-RA
Protein status:BS09301.pep: full length peptide match
Sequenced Size:1601

Clone Sequence Records

BS09301.3prime Sequence

936 bp (894 high quality bases) assembled on 2006-01-29

> BS09301.3prime
ATGGTCTTGAAAGCTTCTACTTGCACATGGTATGACCGTCGCCCAAGCAG
GATGCGTAGGCCATCATATGCGGAATGGTGCTCTGTTCGTAGACTCCGGT
GAACAGGTGCGCCCAGGGACCCAACGCGTAGACGGGCACATCGTCGCCTC
CGTGCGAGTCCATGTCGATGGGGACACCCGAGGGAAACTCATCGTCGTGG
TCTCCCTTCACCACCGTGGTGGGATCCTTGCGCTCCATCGTCTCCGCGTC
GTAGAAATTCTCGTAACTCGGTCCGTTGGCGTAGCTTAGAACCATGTATG
GTTTGCCATCGTGTCCATTTACTGGGGTCTTTCCAAATACATCAGATCCA
CGGTACGAGTATCCTGCGTAGGTGAACACATGTGAGTGATCGGCGGTGAC
CACCAGCAAGGTGTCATCCTCGCTGGTCAGCTCCTGGGCAGCGGCGATGG
CCTTGGAGAACTCAATAGTTTCATTCAGAGCCATACGCGCCTGGTTGATG
TGGTGGGCCTGGTCGATGCGACCGCCCTCGATGAAGAGGAAGTAGCCCTG
CTCGTTCTGGCTCATGTACTCGATGGCCTTGCGGGTCATCTGCTCCAAAG
TGGGCTGGCTGCTCTCTGTTGTGGTCTCCATGAGGTACTGCAGATGGTCG
TCGTTGAAGAGACCGAGGAGGCGATCCGTTTTGGTGACATCCACGGCGGC
CAACTCTGCGGCGGTGGTCACATAGACATTATTTTCGCTTGCTGATTTAA
ATTCATCGATAAGGTTAAGTCCATCGGTACGCTTGCCCCAGGATTCCAGA
CTGGAGTCGACAAAGTGCTTGCGTCCGCCGCCCATGATCACCTTCAGCTT
GCTGCCCACCTCGCCGCGGGCCAGTTGATAGGCAATGTCATTGATTCCGG
AGCCTGCTCCACAGTCGGTAGCCACCTCCGCATCGT

BS09301.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-PA 1569 CG10827-RA 650..1569 936..17 4600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-RA 1674 CG10827-RA 666..1585 936..17 4600 100 Minus
CG5150-RB 1881 CG5150-RB 1467..1576 148..39 220 80 Minus
CG5150-RA 1796 CG5150-RA 1467..1576 148..39 220 80 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21005745..21006325 356..936 2905 100 Plus
3R 32079331 3R 21005249..21005588 17..356 1700 100 Plus
3L 28110227 3L 5597008..5597117 148..39 220 80 Minus
Blast to na_te.dros performed on 2015-01-31 12:37:00 has no hits.

BS09301.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:19 Download gff for BS09301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10827-PA 650..1569 17..936 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:30 Download gff for BS09301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10827-PA 650..1569 17..936 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 00:02:03 Download gff for BS09301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 666..1585 17..936 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:06:30 Download gff for BS09301.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 666..1585 17..936 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:06:30 Download gff for BS09301.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21005249..21005587 17..355 100 <- Plus
3R 21005745..21006325 356..936 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 00:02:03 Download gff for BS09301.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16830971..16831309 17..355 100 <- Plus
arm_3R 16831467..16832047 356..936 100   Plus

BS09301.5prime Sequence

927 bp (857 high quality bases) assembled on 2006-01-29

> BS09301.5prime
GAAGTTATCAGTCGACATGTTCCGCCTGTTGAACGCACTACTGATCGCCA
TCGTGCTGGTAGCCCATCCCGCTTGGTCCGCTCCGGAATGCGGCCGTACT
CCGGAGGAGTGCAGGGAGCACAGGATGCATCCGGATATGCCGGAACCGGA
ACGACATGGCAAGGCATTCCGGGTGGTTGATGGCGAGGATACCAACGCCT
ACTGGCGCCAACAGGGAGTGCAGTTTGTCCAGCAGAAGTTGGCTTCTGAA
CCGAATAAGCGCCAGGCCAAGAATGTGATCCTCTTTCTCGGCGATGGAAT
GGGTGTGACCACCACGTCAGCGGCTCGCAATCTCTTGGGCGGCGAGGAGA
AGTCCCTGTCCTTCGAAAACTTCCCCTTCACGGGCCTCTCGAAGACCTAT
TCCGTGGATAAGATTGTGCCCGACTCCGCCTGCACGGCCACTGCCTATTT
GTGTGGCGTGAAAGGTCAGGAGGGAACTATTGGCGTGAATGGCCAGGTGC
CCCGCACCGACTGCAAGGTCATGCTGGACGAGAGCACCCACGTCGACTCC
ATTGCCAAGTGGGCCATGGAGGCGGGCAAGTGGGCGGGTCTGGTGACCAC
CACCCGCGTCACTCACGCCTCGCCTTCTGGAGTGTACGCCCACATAGCTG
AGCGCGACTGGGAGAACGATGCGGAGGTGGCTACCGACTGTGGAGCAGGC
TCCGGAATCAATGACATTGCCTATCAACTGGCCCGCGGCGAGGTGGGCAG
CAAGCTGAAGGTGATCATGGGCGGCGGACGCAAGCACTTTGTCGACTCCA
GTCTGGAATCCTGGGGCAAGCGTACCGATGGACTTAACCTTATCGATGAA
TTTAAATCAGCAAGCGAAAATAATGTCTATGTGACCACCGCCGCAGAGTT
GGGCGCCGTGGATGTCACCAAACGGAT

BS09301.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-PA 1569 CG10827-RA 1..906 17..922 4505 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-RA 1674 CG10827-RA 17..928 17..927 4520 99.8 Plus
CG5150-RB 1881 CG5150-RB 561..667 560..666 220 80.4 Plus
CG5150-RA 1796 CG5150-RA 561..667 560..666 220 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21006069..21006974 922..17 4515 99.9 Minus
3L 28110227 3L 5596102..5596208 560..666 220 80.4 Plus
3L 28110227 3L 5593904..5593988 642..558 185 81.2 Minus
Blast to na_te.dros performed on 2015-02-12 04:37:09 has no hits.

BS09301.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:20 Download gff for BS09301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10827-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:31 Download gff for BS09301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10827-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:50 Download gff for BS09301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 17..928 17..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:30 Download gff for BS09301.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 17..928 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:30 Download gff for BS09301.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21006063..21006974 17..927 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:50 Download gff for BS09301.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16831785..16832696 17..927 99   Minus

BS09301.complete Sequence

1601 bp assembled on 2008-08-15

> BS09301.complete
GAAGTTATCAGTCGACATGTTCCGCCTGTTGAACGCACTACTGATCGCCA
TCGTGCTGGTAGCCCATCCCGCTTGGTCCGCTCCGGAATGCGGCCGTACT
CCGGAGGAGTGCAGGGAGCACAGGATGCATCCGGATATGCCGGAACCGGA
ACGACATGGCAAGGCATTCCGGGTGGTTGATGGCGAGGATACCAACGCCT
ACTGGCGCCAACAGGGAGTGCAGTTTGTCCAGCAGAAGTTGGCTTCTGAA
CCGAATAAGCGCCAGGCCAAGAATGTGATCCTCTTTCTCGGCGATGGAAT
GGGTGTGACCACCACGTCAGCGGCTCGCAATCTCTTGGGCGGCGAGGAGA
AGTCCCTGTCCTTCGAAAACTTCCCCTTCACGGGCCTCTCGAAGACCTAT
TCCGTGGATAAGATTGTGCCCGACTCCGCCTGCACGGCCACTGCCTATTT
GTGTGGCGTGAAAGGTCAGGAGGGAACTATTGGCGTGAATGGCCAGGTGC
CCCGCACCGACTGCAAGGTCATGCTGGACGAGAGCACCCACGTCGACTCC
ATTGCCAAGTGGGCCATGGAGGCGGGCAAGTGGGCGGGTCTGGTGACCAC
CACCCGCGTCACTCACGCCTCGCCTTCTGGAGTGTACGCCCACATAGCTG
AGCGCGACTGGGAGAACGATGCGGAGGTGGCTACCGACTGTGGAGCAGGC
TCCGGAATCAATGACATTGCCTATCAACTGGCCCGCGGCGAGGTGGGCAG
CAAGCTGAAGGTGATCATGGGCGGCGGACGCAAGCACTTTGTCGACTCCA
GTCTGGAATCCTGGGGCAAGCGTACCGATGGACTTAACCTTATCGATGAA
TTTAAATCAGCAAGCGAAAATAATGTCTATGTGACCACCGCCGCAGAGTT
GGCCGCCGTGGATGTCACCAAAACGGATCGCCTCCTCGGTCTCTTCAACG
ACGACCATCTGCAGTACCTCATGGAGACCACAACAGAGAGCAGCCAGCCC
ACTTTGGAGCAGATGACCCGCAAGGCCATCGAGTACATGAGCCAGAACGA
GCAGGGCTACTTCCTCTTCATCGAGGGCGGTCGCATCGACCAGGCCCACC
ACATCAACCAGGCGCGTATGGCTCTGAATGAAACTATTGAGTTCTCCAAG
GCCATCGCCGCTGCCCAGGAGCTGACCAGCGAGGATGACACCTTGCTGGT
GGTCACCGCCGATCACTCACATGTGTTCACCTACGCAGGATACTCGTACC
GTGGATCTGATGTATTTGGAAAGACCCCAGTAAATGGACACGATGGCAAA
CCATACATGGTTCTAAGCTACGCCAACGGACCGAGTTACGAGAATTTCTA
CGACGCGGAGACGATGGAGCGCAAGGATCCCACCACGGTGGTGAAGGGAG
ACCACGACGATGAGTTTCCCTCGGGTGTCCCCATCGACATGGACTCGCAC
GGAGGCGACGATGTGCCCGTCTACGCGTTGGGTCCCTGGGCGCACCTGTT
CACCGGAGTCTACGAACAGAGCACCATTCCGCATATGATGGCCTACGCAT
CCTGCTTGGGCGACGGTCATACCATGTGCAAGTAGAAGCTTTCAAGACCA
T

BS09301.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-RA 1569 CG10827-PA 1..1569 17..1585 7845 100 Plus
CG5150-RB 1554 CG5150-PB 517..623 560..666 220 80.4 Plus
CG5150-RB 1554 CG5150-PB 1423..1532 1454..1563 220 80 Plus
CG5150-RA 1554 CG5150-PA 517..623 560..666 220 80.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-RA 1674 CG10827-RA 17..1585 17..1585 7845 100 Plus
CG5150-RB 1881 CG5150-RB 561..667 560..666 220 80.4 Plus
CG5150-RB 1881 CG5150-RB 1467..1576 1454..1563 220 80 Plus
CG5150-RA 1796 CG5150-RA 561..667 560..666 220 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21005745..21006974 1246..17 6150 100 Minus
3R 32079331 3R 21005249..21005588 1585..1246 1700 100 Minus
3L 28110227 3L 5596102..5596208 560..666 220 80.4 Plus
3L 28110227 3L 5597008..5597117 1454..1563 220 80 Plus
3L 28110227 3L 5593904..5593988 642..558 185 81.2 Minus
Blast to na_te.dros performed on 2014-11-26 16:01:37 has no hits.

BS09301.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:46 Download gff for BS09301.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 14..1582 17..1585 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:30 Download gff for BS09301.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 22..1585 22..1585 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:19 Download gff for BS09301.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 19..1582 22..1585 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:31 Download gff for BS09301.complete
Subject Subject Range Query Range Percent Splice Strand
CG10827-RA 22..1585 22..1585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:31 Download gff for BS09301.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21005249..21005587 1247..1585 100 <- Minus
3R 21005745..21006969 22..1246 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:30 Download gff for BS09301.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16830971..16831309 1247..1585 100 <- Minus
arm_3R 16831467..16832691 22..1246 100   Minus

BS09301.pep Sequence

Translation from 16 to 1584

> BS09301.pep
MFRLLNALLIAIVLVAHPAWSAPECGRTPEECREHRMHPDMPEPERHGKA
FRVVDGEDTNAYWRQQGVQFVQQKLASEPNKRQAKNVILFLGDGMGVTTT
SAARNLLGGEEKSLSFENFPFTGLSKTYSVDKIVPDSACTATAYLCGVKG
QEGTIGVNGQVPRTDCKVMLDESTHVDSIAKWAMEAGKWAGLVTTTRVTH
ASPSGVYAHIAERDWENDAEVATDCGAGSGINDIAYQLARGEVGSKLKVI
MGGGRKHFVDSSLESWGKRTDGLNLIDEFKSASENNVYVTTAAELAAVDV
TKTDRLLGLFNDDHLQYLMETTTESSQPTLEQMTRKAIEYMSQNEQGYFL
FIEGGRIDQAHHINQARMALNETIEFSKAIAAAQELTSEDDTLLVVTADH
SHVFTYAGYSYRGSDVFGKTPVNGHDGKPYMVLSYANGPSYENFYDAETM
ERKDPTTVVKGDHDDEFPSGVPIDMDSHGGDDVPVYALGPWAHLFTGVYE
QSTIPHMMAYASCLGDGHTMCK*

BS09301.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10827-PA 522 CG10827-PA 1..522 1..522 2767 100 Plus
CG5150-PB 517 CG5150-PB 17..516 20..521 1516 56.3 Plus
CG5150-PA 517 CG5150-PA 17..516 20..521 1516 56.3 Plus
CG10592-PA 524 CG10592-PA 26..514 33..515 1104 46.8 Plus
CG1809-PA 515 CG1809-PA 43..512 57..515 1093 50.1 Plus