Clone BS09302 Report

Search the DGRC for BS09302

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG13360-RA
Protein status:BS09302.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09302.3prime Sequence

890 bp (864 high quality bases) assembled on 2006-01-29

> BS09302.3prime
ATGGTCTAGAAAGCTTTCAATCGAATATTCCCAGGTCATCGAAGCGACGC
AGGGCGTAGCGCAAGGTGTCCGTGGTGCGGGGATTGGAGGAGAACATCAG
CTGGACCTTCTTCTTGGCGAAGTCCTGGTCCGACAGCGCCTCTATGCTGA
TGTCGTACGAGTCCTCCTTCTTCATGGTCACCATCGGCAGAAAGGCGTAG
GACGAGAAGAAGCCGTACAGTTCTCTGGCCCGGATCTCCTGTTGAATATC
CGCGTAGCTGGGCACAAACGCCGAGTGCATCCGCTCCAGGCTGTCCCTTA
GGGAAGCGTAGTACGTCTGGATAAGGAACTCGCGCCGGTGGATCAACACG
TCCAGCTGGACGCTGCTGTTTAGGAAGAAGTTTATGTCGCAGCCTGGGCT
GCCGAAGAAGCTGTTTTGGAAATCCACGAATATGGCATCGATGGGCTTCG
TGGGCTGCTCGTCGTCGTATTTATACATGAAGTTGTTTACCCACAGGTCG
CCATGATTAAGCACAGTGATCTCTCCGGGCAGCGGCCGCCCGGTGGTCAC
GAGGTTCTCCTTGATGTTGTCGCAGTGGCGGTGCAGCTTCTCTGCCAGCA
GCTCGTAGCCGGGCCACTTGGAGACGACGTTGGCCAAAGTCCGGCACTGG
AGGGTCATGAAGTTGATGAATCGCTCGTTGGTTCTGATGTAGTTTTCGTC
CAGCATACCGGTGGTGAAGTGCTCGCGAACACTTGGTTCCTTCTCGGCCA
GCACCATTGAGCTGGCGTGGAACTTGCCCAGCTTCTTGAGGATGACCACG
CAGTGCTCCTCGTTAAGCCCGCTCTGCCTGCTGGCTAGCTTGTAGCCGTA
CTGGGTGAGGTCGTCGAAGACGATCGTCTGGATGGGCTCG

BS09302.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13360-PA 1266 CG13360-RA 393..1266 890..17 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13360-RA 1603 CG13360-RA 468..1341 890..17 4370 100 Minus
tw-RB 2840 CG12311-RB 2742..2840 17..115 495 100 Plus
CG9498-RA 1514 CG9498-RA 925..1009 437..353 185 81.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 788117..788527 17..427 2055 100 Plus
X 23542271 X 788589..788905 425..741 1585 100 Plus
X 23542271 X 789471..789622 739..890 760 100 Plus
2L 23513712 2L 6349898..6349982 353..437 185 81.2 Plus
Blast to na_te.dros performed on 2015-02-10 20:43:37 has no hits.

BS09302.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:21 Download gff for BS09302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13360-PA 393..1266 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:33 Download gff for BS09302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13360-PA 393..1266 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:08 Download gff for BS09302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 468..1341 17..890 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:35 Download gff for BS09302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 468..1341 17..890 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:35 Download gff for BS09302.3prime
Subject Subject Range Query Range Percent Splice Strand
X 788117..788527 17..427 100 <- Plus
X 788592..788903 428..739 100 <- Plus
X 789472..789622 740..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:08 Download gff for BS09302.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 682150..682560 17..427 100 <- Plus
arm_X 682625..682936 428..739 100 <- Plus
arm_X 683505..683655 740..890 100   Plus

BS09302.5prime Sequence

958 bp (835 high quality bases) assembled on 2006-01-29

> BS09302.5prime
GAAGTTATCAGTCGACATGAAGCTGGACGACAAGCAGAAGCGACTGGGCC
ACGAGCCTCCCAAGTACCTCAACGAGGACTTCTTCAAGGCGGCGCTTGAG
GACGGACTTCGAGACATGCGGGTGGACATCAAGAAGATCATCTTTTCCGA
GTCGAGCGGTGGCGGCGGTGAGAACTACTGCAGCAAAATCTATAGGGCCA
AGGCACTTTACCGCAGCAGCAAGAGGCAGCTGGACGAGGAGCTGGCCCTG
ATTGTCAAGAGTATTGCCATCACGCCGGCCACCCAGTTCCTCGAGGAGCT
GGCCGTGTATCTGCGCGAGAAGATATTCTACTTCGACGTCCTCGGCAAAC
TGGAAGTCTTGATCGGCGACGGGTCCAAGTTTGGAGCCAAGTGCCTGTAC
ACAACCCGCGAGCCCATCCAGACGATCGTCTTCGACGACCTCACCCAGTA
CGGCTACAAGCTAGCCAGCAGGCAGAGCGGGCTTAACGAGGAGCACTGCG
TGGTCATCCTCAAGAAGCTGGGCAAGTTCCACGCCAGCTCAATGGTGCTG
GCCGAGAAGGAACCAAGTGTTCGCGAGCACTTCACCACCGGTATGCTGGA
CGAAAACTACATCAGAACCAACGAGCGATTCATCAACTTCATGACCCTCC
AGTGCCGGACTTTGGCCAACGTCGTCTCCAAGTGGCCCGGCTACGAGCTG
CTGGCAGAGAAGCTGCACCGCCACTGCGACAACATCAAGGAGAACCTCGT
GACCACCGGGCGGCCGCTGCCCGGAGAGATCACTGTGCTTAATCATGGCG
ACCTGTGGGTAAACAACTTCATGTATAAATACGACGACGAGCAGCCCACG
AAGCCCATCGATGCCATATTCGTGGATTTCCAAAACAGCTTCTTCGGCAG
CCCAGGCTGCGACATAAACTTCTTCTAAACAGCAGCGTCCAGCTGGACGT
GTTGATCC

BS09302.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13360-PA 1266 CG13360-RA 1..909 17..925 4545 100 Plus
CG13360-PA 1266 CG13360-RA 910..943 925..958 170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13360-RA 1603 CG13360-RA 76..1018 17..958 4690 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 789471..790014 560..17 2720 100 Minus
X 23542271 X 788589..788905 874..558 1585 100 Minus
X 23542271 X 788440..788527 958..872 390 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 19:46:44 has no hits.

BS09302.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:22 Download gff for BS09302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13360-PA 1..943 17..958 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:35 Download gff for BS09302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13360-PA 1..943 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:20:55 Download gff for BS09302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 76..1018 17..958 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:57:04 Download gff for BS09302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 76..1018 17..958 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:57:04 Download gff for BS09302.5prime
Subject Subject Range Query Range Percent Splice Strand
X 788440..788527 872..958 98 <- Minus
X 788592..788903 560..871 100 <- Minus
X 789472..790014 17..559 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:20:55 Download gff for BS09302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 682473..682560 872..958 98 <- Minus
arm_X 682625..682936 560..871 100 <- Minus
arm_X 683505..684047 17..559 100   Minus

BS09302.complete Sequence

1298 bp (1298 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636391

> BS09302.complete
GAAGTTATCAGTCGACATGAAGCTGGACGACAAGCAGAAGCGACTGGGCC
ACGAGCCTCCCAAGTACCTCAACGAGGACTTCTTCAAGGCGGCGCTTGAG
GACGGACTTCGAGACATGCGGGTGGACATCAAGAAGATCATCTTTTCCGA
GTCGAGCGGTGGCGGCGGTGAGAACTACTGCAGCAAAATCTATAGGGCCA
AGGCACTTTACCGCAGCAGCAAGAGGCAGCTGGACGAGGAGCTGGCCCTG
ATTGTCAAGAGTATTGCCATCACGCCGGCCACCCAGTTCCTCGAGGAGCT
GGCCGTGTATCTGCGCGAGAAGATATTCTACTTCGACGTCCTCGGCAAAC
TGGAAGTCTTGATCGGCGACGGGTCCAAGTTTGGAGCCAAGTGCCTGTAC
ACAACCCGCGAGCCCATCCAGACGATCGTCTTCGACGACCTCACCCAGTA
CGGCTACAAGCTAGCCAGCAGGCAGAGCGGGCTTAACGAGGAGCACTGCG
TGGTCATCCTCAAGAAGCTGGGCAAGTTCCACGCCAGCTCAATGGTGCTG
GCCGAGAAGGAACCAAGTGTTCGCGAGCACTTCACCACCGGTATGCTGGA
CGAAAACTACATCAGAACCAACGAGCGATTCATCAACTTCATGACCCTCC
AGTGCCGGACTTTGGCCAACGTCGTCTCCAAGTGGCCCGGCTACGAGCTG
CTGGCAGAGAAGCTGCACCGCCACTGCGACAACATCAAGGAGAACCTCGT
GACCACCGGGCGGCCGCTGCCCGGAGAGATCACTGTGCTTAATCATGGCG
ACCTGTGGGTAAACAACTTCATGTATAAATACGACGACGAGCAGCCCACG
AAGCCCATCGATGCCATATTCGTGGATTTCCAAAACAGCTTCTTCGGCAG
CCCAGGCTGCGACATAAACTTCTTCCTAAACAGCAGCGTCCAGCTGGACG
TGTTGATCCACCGGCGCGAGTTCCTTATCCAGACGTACTACGCTTCCCTA
AGGGACAGCCTGGAGCGGATGCACTCGGCGTTTGTGCCCAGCTACGCGGA
TATTCAACAGGAGATCCGGGCCAGAGAACTGTACGGCTTCTTCTCGTCCT
ACGCCTTTCTGCCGATGGTGACCATGAAGAAGGAGGACTCGTACGACATC
AGCATAGAGGCGCTGTCGGACCAGGACTTCGCCAAGAAGAAGGTCCAGCT
GATGTTCTCCTCCAATCCCCGCACCACGGACACCTTGCGCTACGCCCTGC
GTCGCTTCGATGACCTGGGAATATTCGATTGAAAGCTTTCTAGACCAT

BS09302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13360-RA 1266 CG13360-PA 1..1266 17..1282 6330 100 Plus
CG9498-RA 1275 CG9498-PA 852..936 862..946 185 81.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13360-RA 1603 CG13360-RA 76..1341 17..1282 6330 100 Plus
tw-RB 2840 CG12311-RB 2742..2840 1282..1184 495 100 Minus
CG9498-RA 1514 CG9498-RA 925..1009 862..946 185 81.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 789471..790014 560..17 2720 100 Minus
X 23542271 X 788117..788527 1282..872 2055 100 Minus
X 23542271 X 788589..788905 874..558 1585 100 Minus
2L 23513712 2L 6349898..6349982 946..862 185 81.2 Minus
Blast to na_te.dros performed on 2014-11-26 22:33:30 has no hits.

BS09302.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:37 Download gff for BS09302.complete
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 1..1266 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:06 Download gff for BS09302.complete
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 76..1341 17..1282 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:59 Download gff for BS09302.complete
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 76..1340 17..1281 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:38 Download gff for BS09302.complete
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 76..1341 17..1282 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:19 Download gff for BS09302.complete
Subject Subject Range Query Range Percent Splice Strand
CG13360-RA 76..1340 17..1281 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:19 Download gff for BS09302.complete
Subject Subject Range Query Range Percent Splice Strand
X 788118..788527 872..1281 100 <- Minus
X 788592..788903 560..871 100 <- Minus
X 789472..790014 17..559 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:59 Download gff for BS09302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 682151..682560 872..1281 100 <- Minus
arm_X 682625..682936 560..871 100 <- Minus
arm_X 683505..684047 17..559 100   Minus

BS09302.pep Sequence

Translation from 16 to 1281

> BS09302.pep
MKLDDKQKRLGHEPPKYLNEDFFKAALEDGLRDMRVDIKKIIFSESSGGG
GENYCSKIYRAKALYRSSKRQLDEELALIVKSIAITPATQFLEELAVYLR
EKIFYFDVLGKLEVLIGDGSKFGAKCLYTTREPIQTIVFDDLTQYGYKLA
SRQSGLNEEHCVVILKKLGKFHASSMVLAEKEPSVREHFTTGMLDENYIR
TNERFINFMTLQCRTLANVVSKWPGYELLAEKLHRHCDNIKENLVTTGRP
LPGEITVLNHGDLWVNNFMYKYDDEQPTKPIDAIFVDFQNSFFGSPGCDI
NFFLNSSVQLDVLIHRREFLIQTYYASLRDSLERMHSAFVPSYADIQQEI
RARELYGFFSSYAFLPMVTMKKEDSYDISIEALSDQDFAKKKVQLMFSSN
PRTTDTLRYALRRFDDLGIFD*

BS09302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13360-PA 421 CG13360-PA 1..421 1..421 2188 100 Plus
CG9498-PA 424 CG9498-PA 13..421 15..420 937 47.1 Plus
CG9497-PB 417 CG9497-PB 13..417 14..421 826 41.7 Plus
CG9497-PA 417 CG9497-PA 13..417 14..421 826 41.7 Plus
CG7135-PA 417 CG7135-PA 7..417 13..421 731 40.5 Plus