Clone Sequence Records
BS09302.3prime Sequence
890 bp (864 high quality bases) assembled on 2006-01-29
> BS09302.3prime
ATGGTCTAGAAAGCTTTCAATCGAATATTCCCAGGTCATCGAAGCGACGC
AGGGCGTAGCGCAAGGTGTCCGTGGTGCGGGGATTGGAGGAGAACATCAG
CTGGACCTTCTTCTTGGCGAAGTCCTGGTCCGACAGCGCCTCTATGCTGA
TGTCGTACGAGTCCTCCTTCTTCATGGTCACCATCGGCAGAAAGGCGTAG
GACGAGAAGAAGCCGTACAGTTCTCTGGCCCGGATCTCCTGTTGAATATC
CGCGTAGCTGGGCACAAACGCCGAGTGCATCCGCTCCAGGCTGTCCCTTA
GGGAAGCGTAGTACGTCTGGATAAGGAACTCGCGCCGGTGGATCAACACG
TCCAGCTGGACGCTGCTGTTTAGGAAGAAGTTTATGTCGCAGCCTGGGCT
GCCGAAGAAGCTGTTTTGGAAATCCACGAATATGGCATCGATGGGCTTCG
TGGGCTGCTCGTCGTCGTATTTATACATGAAGTTGTTTACCCACAGGTCG
CCATGATTAAGCACAGTGATCTCTCCGGGCAGCGGCCGCCCGGTGGTCAC
GAGGTTCTCCTTGATGTTGTCGCAGTGGCGGTGCAGCTTCTCTGCCAGCA
GCTCGTAGCCGGGCCACTTGGAGACGACGTTGGCCAAAGTCCGGCACTGG
AGGGTCATGAAGTTGATGAATCGCTCGTTGGTTCTGATGTAGTTTTCGTC
CAGCATACCGGTGGTGAAGTGCTCGCGAACACTTGGTTCCTTCTCGGCCA
GCACCATTGAGCTGGCGTGGAACTTGCCCAGCTTCTTGAGGATGACCACG
CAGTGCTCCTCGTTAAGCCCGCTCTGCCTGCTGGCTAGCTTGTAGCCGTA
CTGGGTGAGGTCGTCGAAGACGATCGTCTGGATGGGCTCG
BS09302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13360-PA | 1266 | CG13360-RA | 393..1266 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13360-RA | 1603 | CG13360-RA | 468..1341 | 890..17 | 4370 | 100 | Minus |
tw-RB | 2840 | CG12311-RB | 2742..2840 | 17..115 | 495 | 100 | Plus |
CG9498-RA | 1514 | CG9498-RA | 925..1009 | 437..353 | 185 | 81.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 788117..788527 | 17..427 | 2055 | 100 | Plus |
X | 23542271 | X | 788589..788905 | 425..741 | 1585 | 100 | Plus |
X | 23542271 | X | 789471..789622 | 739..890 | 760 | 100 | Plus |
2L | 23513712 | 2L | 6349898..6349982 | 353..437 | 185 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:43:37 has no hits.
BS09302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:21 Download gff for
BS09302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-PA | 393..1266 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:33 Download gff for
BS09302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-PA | 393..1266 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:08 Download gff for
BS09302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 468..1341 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:35 Download gff for
BS09302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 468..1341 | 17..890 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:35 Download gff for
BS09302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 788117..788527 | 17..427 | 100 | <- | Plus |
X | 788592..788903 | 428..739 | 100 | <- | Plus |
X | 789472..789622 | 740..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:08 Download gff for
BS09302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 682150..682560 | 17..427 | 100 | <- | Plus |
arm_X | 682625..682936 | 428..739 | 100 | <- | Plus |
arm_X | 683505..683655 | 740..890 | 100 | | Plus |
BS09302.5prime Sequence
958 bp (835 high quality bases) assembled on 2006-01-29
> BS09302.5prime
GAAGTTATCAGTCGACATGAAGCTGGACGACAAGCAGAAGCGACTGGGCC
ACGAGCCTCCCAAGTACCTCAACGAGGACTTCTTCAAGGCGGCGCTTGAG
GACGGACTTCGAGACATGCGGGTGGACATCAAGAAGATCATCTTTTCCGA
GTCGAGCGGTGGCGGCGGTGAGAACTACTGCAGCAAAATCTATAGGGCCA
AGGCACTTTACCGCAGCAGCAAGAGGCAGCTGGACGAGGAGCTGGCCCTG
ATTGTCAAGAGTATTGCCATCACGCCGGCCACCCAGTTCCTCGAGGAGCT
GGCCGTGTATCTGCGCGAGAAGATATTCTACTTCGACGTCCTCGGCAAAC
TGGAAGTCTTGATCGGCGACGGGTCCAAGTTTGGAGCCAAGTGCCTGTAC
ACAACCCGCGAGCCCATCCAGACGATCGTCTTCGACGACCTCACCCAGTA
CGGCTACAAGCTAGCCAGCAGGCAGAGCGGGCTTAACGAGGAGCACTGCG
TGGTCATCCTCAAGAAGCTGGGCAAGTTCCACGCCAGCTCAATGGTGCTG
GCCGAGAAGGAACCAAGTGTTCGCGAGCACTTCACCACCGGTATGCTGGA
CGAAAACTACATCAGAACCAACGAGCGATTCATCAACTTCATGACCCTCC
AGTGCCGGACTTTGGCCAACGTCGTCTCCAAGTGGCCCGGCTACGAGCTG
CTGGCAGAGAAGCTGCACCGCCACTGCGACAACATCAAGGAGAACCTCGT
GACCACCGGGCGGCCGCTGCCCGGAGAGATCACTGTGCTTAATCATGGCG
ACCTGTGGGTAAACAACTTCATGTATAAATACGACGACGAGCAGCCCACG
AAGCCCATCGATGCCATATTCGTGGATTTCCAAAACAGCTTCTTCGGCAG
CCCAGGCTGCGACATAAACTTCTTCTAAACAGCAGCGTCCAGCTGGACGT
GTTGATCC
BS09302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13360-PA | 1266 | CG13360-RA | 1..909 | 17..925 | 4545 | 100 | Plus |
CG13360-PA | 1266 | CG13360-RA | 910..943 | 925..958 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13360-RA | 1603 | CG13360-RA | 76..1018 | 17..958 | 4690 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 789471..790014 | 560..17 | 2720 | 100 | Minus |
X | 23542271 | X | 788589..788905 | 874..558 | 1585 | 100 | Minus |
X | 23542271 | X | 788440..788527 | 958..872 | 390 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:46:44 has no hits.
BS09302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:22 Download gff for
BS09302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-PA | 1..943 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:13:35 Download gff for
BS09302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-PA | 1..943 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:20:55 Download gff for
BS09302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 76..1018 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:57:04 Download gff for
BS09302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 76..1018 | 17..958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:57:04 Download gff for
BS09302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 788440..788527 | 872..958 | 98 | <- | Minus |
X | 788592..788903 | 560..871 | 100 | <- | Minus |
X | 789472..790014 | 17..559 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:20:55 Download gff for
BS09302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 682473..682560 | 872..958 | 98 | <- | Minus |
arm_X | 682625..682936 | 560..871 | 100 | <- | Minus |
arm_X | 683505..684047 | 17..559 | 100 | | Minus |
BS09302.complete Sequence
1298 bp (1298 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636391
> BS09302.complete
GAAGTTATCAGTCGACATGAAGCTGGACGACAAGCAGAAGCGACTGGGCC
ACGAGCCTCCCAAGTACCTCAACGAGGACTTCTTCAAGGCGGCGCTTGAG
GACGGACTTCGAGACATGCGGGTGGACATCAAGAAGATCATCTTTTCCGA
GTCGAGCGGTGGCGGCGGTGAGAACTACTGCAGCAAAATCTATAGGGCCA
AGGCACTTTACCGCAGCAGCAAGAGGCAGCTGGACGAGGAGCTGGCCCTG
ATTGTCAAGAGTATTGCCATCACGCCGGCCACCCAGTTCCTCGAGGAGCT
GGCCGTGTATCTGCGCGAGAAGATATTCTACTTCGACGTCCTCGGCAAAC
TGGAAGTCTTGATCGGCGACGGGTCCAAGTTTGGAGCCAAGTGCCTGTAC
ACAACCCGCGAGCCCATCCAGACGATCGTCTTCGACGACCTCACCCAGTA
CGGCTACAAGCTAGCCAGCAGGCAGAGCGGGCTTAACGAGGAGCACTGCG
TGGTCATCCTCAAGAAGCTGGGCAAGTTCCACGCCAGCTCAATGGTGCTG
GCCGAGAAGGAACCAAGTGTTCGCGAGCACTTCACCACCGGTATGCTGGA
CGAAAACTACATCAGAACCAACGAGCGATTCATCAACTTCATGACCCTCC
AGTGCCGGACTTTGGCCAACGTCGTCTCCAAGTGGCCCGGCTACGAGCTG
CTGGCAGAGAAGCTGCACCGCCACTGCGACAACATCAAGGAGAACCTCGT
GACCACCGGGCGGCCGCTGCCCGGAGAGATCACTGTGCTTAATCATGGCG
ACCTGTGGGTAAACAACTTCATGTATAAATACGACGACGAGCAGCCCACG
AAGCCCATCGATGCCATATTCGTGGATTTCCAAAACAGCTTCTTCGGCAG
CCCAGGCTGCGACATAAACTTCTTCCTAAACAGCAGCGTCCAGCTGGACG
TGTTGATCCACCGGCGCGAGTTCCTTATCCAGACGTACTACGCTTCCCTA
AGGGACAGCCTGGAGCGGATGCACTCGGCGTTTGTGCCCAGCTACGCGGA
TATTCAACAGGAGATCCGGGCCAGAGAACTGTACGGCTTCTTCTCGTCCT
ACGCCTTTCTGCCGATGGTGACCATGAAGAAGGAGGACTCGTACGACATC
AGCATAGAGGCGCTGTCGGACCAGGACTTCGCCAAGAAGAAGGTCCAGCT
GATGTTCTCCTCCAATCCCCGCACCACGGACACCTTGCGCTACGCCCTGC
GTCGCTTCGATGACCTGGGAATATTCGATTGAAAGCTTTCTAGACCAT
BS09302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13360-RA | 1266 | CG13360-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
CG9498-RA | 1275 | CG9498-PA | 852..936 | 862..946 | 185 | 81.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13360-RA | 1603 | CG13360-RA | 76..1341 | 17..1282 | 6330 | 100 | Plus |
tw-RB | 2840 | CG12311-RB | 2742..2840 | 1282..1184 | 495 | 100 | Minus |
CG9498-RA | 1514 | CG9498-RA | 925..1009 | 862..946 | 185 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 789471..790014 | 560..17 | 2720 | 100 | Minus |
X | 23542271 | X | 788117..788527 | 1282..872 | 2055 | 100 | Minus |
X | 23542271 | X | 788589..788905 | 874..558 | 1585 | 100 | Minus |
2L | 23513712 | 2L | 6349898..6349982 | 946..862 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:33:30 has no hits.
BS09302.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:37 Download gff for
BS09302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 1..1266 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:06 Download gff for
BS09302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 76..1341 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:59 Download gff for
BS09302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 76..1340 | 17..1281 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:38 Download gff for
BS09302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 76..1341 | 17..1282 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:19 Download gff for
BS09302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13360-RA | 76..1340 | 17..1281 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:19 Download gff for
BS09302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 788118..788527 | 872..1281 | 100 | <- | Minus |
X | 788592..788903 | 560..871 | 100 | <- | Minus |
X | 789472..790014 | 17..559 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:59 Download gff for
BS09302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 682151..682560 | 872..1281 | 100 | <- | Minus |
arm_X | 682625..682936 | 560..871 | 100 | <- | Minus |
arm_X | 683505..684047 | 17..559 | 100 | | Minus |
BS09302.pep Sequence
Translation from 16 to 1281
> BS09302.pep
MKLDDKQKRLGHEPPKYLNEDFFKAALEDGLRDMRVDIKKIIFSESSGGG
GENYCSKIYRAKALYRSSKRQLDEELALIVKSIAITPATQFLEELAVYLR
EKIFYFDVLGKLEVLIGDGSKFGAKCLYTTREPIQTIVFDDLTQYGYKLA
SRQSGLNEEHCVVILKKLGKFHASSMVLAEKEPSVREHFTTGMLDENYIR
TNERFINFMTLQCRTLANVVSKWPGYELLAEKLHRHCDNIKENLVTTGRP
LPGEITVLNHGDLWVNNFMYKYDDEQPTKPIDAIFVDFQNSFFGSPGCDI
NFFLNSSVQLDVLIHRREFLIQTYYASLRDSLERMHSAFVPSYADIQQEI
RARELYGFFSSYAFLPMVTMKKEDSYDISIEALSDQDFAKKKVQLMFSSN
PRTTDTLRYALRRFDDLGIFD*
BS09302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13360-PA | 421 | CG13360-PA | 1..421 | 1..421 | 2188 | 100 | Plus |
CG9498-PA | 424 | CG9498-PA | 13..421 | 15..420 | 937 | 47.1 | Plus |
CG9497-PB | 417 | CG9497-PB | 13..417 | 14..421 | 826 | 41.7 | Plus |
CG9497-PA | 417 | CG9497-PA | 13..417 | 14..421 | 826 | 41.7 | Plus |
CG7135-PA | 417 | CG7135-PA | 7..417 | 13..421 | 731 | 40.5 | Plus |