Clone Sequence Records
BS09314.3prime Sequence
630 bp (629 high quality bases) assembled on 2006-01-29
> BS09314.3prime
ATGGTCTAGAAAGCTTTCAGTTTCTGCGCTGGGAGAAAACATAACGATCT
CGCAAATGGAGCAACTTTTCAAAAAACACAAATGTCAAGGTGGTGTGTGG
AGCACTACGAAAGTATATGGGCCAAAAGCCCTTGTACATCCCATGGATCC
CTTCGGTTCTCCAGATTTTAGTGAAACAGTCCACCAAGCCCTTGTACATG
AGTCCACGCCCCTTTTCATCCACTGGCTGGTTGTACATCCGTGTGGTGAG
CACATCAAAGGGCGAATTGGCCACTGCCACAAGGGTTCCCGACGATAGGC
CGGCACAGAAGGAGAGGAGAACCGGATGGGTGATCCAGCCTTTATCCTTC
AGAAGGGACTTGGCTTTGGGAAAGGTGCCGATCTGTACACTGGAGGCCAC
AAGCGTTCGGTTCAAGCTTGGTAAAGCAGCGCGCCAGAATCCTGAAATGC
CATTGGTCCGGTAAATATGCAGCAGGGCATCCATCATCGAAGTATGCTTG
TGCTGAAAGCCTACGGCAATGGACTGAACCGCCTGGGCATGCTGTTGGGC
CTTTATCATGTAGAAGGGGCTGGCGAAATAGGTGCCCGTGCAGCCGCCCA
GAGCTCCAAAGAACATGTCGACTGATAACT
BS09314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-PB | 924 | CG18324-RB | 324..924 | 617..17 | 3005 | 100 | Minus |
CG18324-PA | 600 | CG18324-RA | 1..600 | 616..17 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-RA | 1401 | CG18324-RA | 677..1278 | 617..16 | 3010 | 100 | Minus |
CG18324-RB | 1118 | CG18324-RB | 394..995 | 617..16 | 3010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14169569..14170110 | 557..16 | 2710 | 100 | Minus |
2R | 25286936 | 2R | 14169462..14169522 | 617..557 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:39:17 has no hits.
BS09314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:43 Download gff for
BS09314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-PB | 316..924 | 17..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:01 Download gff for
BS09314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-PB | 316..924 | 17..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:57 Download gff for
BS09314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 386..995 | 16..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:24 Download gff for
BS09314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 386..995 | 16..627 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:24 Download gff for
BS09314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14169454..14169522 | 557..627 | 94 | -> | Minus |
2R | 14169570..14170110 | 16..556 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:57 Download gff for
BS09314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10056959..10057027 | 557..627 | 94 | -> | Minus |
arm_2R | 10057075..10057615 | 16..556 | 100 | | Minus |
BS09314.5prime Sequence
630 bp (629 high quality bases) assembled on 2006-01-29
> BS09314.5prime
GAAGTTATCAGTCGACATGTTCTTTGGAGCTCTGGGCGGCTGCACGGGCA
CCTATTTCGCCAGCCCCTTCTACATGATAAAGGCCCAACAGCATGCCCAG
GCGGTTCAGTCCATTGCCGTAGGCTTTCAGCACAAGCATACTTCGATGAT
GGATGCCCTGCTGCATATTTACCGGACCAATGGCATTTCAGGATTCTGGC
GCGCTGCTTTACCAAGCTTGAACCGAACGCTTGTGGCCTCCAGTGTACAG
ATCGGCACCTTTCCCAAAGCCAAGTCCCTTCTGAAGGATAAAGGCTGGAT
CACCCATCCGGTTCTCCTCTCCTTCTGTGCCGGCCTATCGTCGGGAACCC
TTGTGGCAGTGGCCAATTCGCCCTTTGATGTGCTCACCACACGGATGTAC
AACCAGCCAGTGGATGAAAAGGGGCGTGGACTCATGTACAAGGGCTTGGT
GGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACA
AGGGCTTTTGGCCCATATACTTTCGTAGTGCTCCACACACCACCTTGACA
TTTGTGTTTTTTGAAAAGTTGCTCCATTTGCGAGATCGTTATGTTTTCTC
CCAGCGCAGAAACTGAAAGCTTTCTAGACC
BS09314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-PB | 924 | CG18324-RB | 324..924 | 16..616 | 3005 | 100 | Plus |
CG18324-PA | 600 | CG18324-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-RA | 1401 | CG18324-RA | 677..1278 | 16..617 | 3010 | 100 | Plus |
CG18324-RB | 1118 | CG18324-RB | 394..995 | 16..617 | 3010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14169569..14170110 | 76..617 | 2710 | 100 | Plus |
2R | 25286936 | 2R | 14169462..14169522 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:48:11 has no hits.
BS09314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:44 Download gff for
BS09314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-PB | 316..924 | 6..616 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:03 Download gff for
BS09314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-PB | 316..924 | 6..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:53 Download gff for
BS09314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 386..995 | 6..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:44 Download gff for
BS09314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 386..995 | 6..617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:44 Download gff for
BS09314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14169454..14169522 | 6..76 | 94 | -> | Plus |
2R | 14169570..14170110 | 77..617 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:53 Download gff for
BS09314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10056959..10057027 | 6..76 | 94 | -> | Plus |
arm_2R | 10057075..10057615 | 77..617 | 100 | | Plus |
BS09314.complete Sequence
632 bp (632 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636392
> BS09314.complete
GAAGTTATCAGTCGACATGTTCTTTGGAGCTCTGGGCGGCTGCACGGGCA
CCTATTTCGCCAGCCCCTTCTACATGATAAAGGCCCAACAGCATGCCCAG
GCGGTTCAGTCCATTGCCGTAGGCTTTCAGCACAAGCATACTTCGATGAT
GGATGCCCTGCTGCATATTTACCGGACCAATGGCATTTCAGGATTCTGGC
GCGCTGCTTTACCAAGCTTGAACCGAACGCTTGTGGCCTCCAGTGTACAG
ATCGGCACCTTTCCCAAAGCCAAGTCCCTTCTGAAGGATAAAGGCTGGAT
CACCCATCCGGTTCTCCTCTCCTTCTGTGCCGGCCTATCGTCGGGAACCC
TTGTGGCAGTGGCCAATTCGCCCTTTGATGTGCTCACCACACGGATGTAC
AACCAGCCAGTGGATGAAAAGGGGCGTGGACTCATGTACAAGGGCTTGGT
GGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACA
AGGGCTTTTGGCCCATATACTTTCGTAGTGCTCCACACACCACCTTGACA
TTTGTGTTTTTTGAAAAGTTGCTCCATTTGCGAGATCGTTATGTTTTCTC
CCAGCGCAGAAACTGAAAGCTTTCTAGACCAT
BS09314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-RB | 924 | CG18324-PB | 324..924 | 16..616 | 3005 | 100 | Plus |
CG18324-RA | 600 | CG18324-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-RA | 1401 | CG18324-RA | 677..1278 | 16..617 | 3010 | 100 | Plus |
CG18324-RB | 1118 | CG18324-RB | 394..995 | 16..617 | 3010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14169569..14170110 | 76..617 | 2710 | 100 | Plus |
2R | 25286936 | 2R | 14169462..14169522 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:04:27 has no hits.
BS09314.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:32 Download gff for
BS09314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 316..924 | 6..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:57 Download gff for
BS09314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RA | 585..1194 | 6..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:41 Download gff for
BS09314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 400..993 | 22..615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:32 Download gff for
BS09314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RA | 585..1194 | 6..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:17 Download gff for
BS09314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18324-RB | 400..993 | 22..615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:17 Download gff for
BS09314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14169468..14169522 | 22..76 | 100 | -> | Plus |
2R | 14169570..14170108 | 77..615 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:41 Download gff for
BS09314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10056973..10057027 | 22..76 | 100 | -> | Plus |
arm_2R | 10057075..10057613 | 77..615 | 100 | | Plus |
BS09314.pep Sequence
Translation from 16 to 615
> BS09314.pep
MFFGALGGCTGTYFASPFYMIKAQQHAQAVQSIAVGFQHKHTSMMDALLH
IYRTNGISGFWRAALPSLNRTLVASSVQIGTFPKAKSLLKDKGWITHPVL
LSFCAGLSSGTLVAVANSPFDVLTTRMYNQPVDEKGRGLMYKGLVDCFTK
IWRTEGIHGMYKGFWPIYFRSAPHTTLTFVFFEKLLHLRDRYVFSQRRN*
BS09314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18324-PA | 199 | CG18324-PA | 1..199 | 1..199 | 1062 | 100 | Plus |
CG18324-PB | 307 | CG18324-PB | 109..307 | 1..199 | 1062 | 100 | Plus |
CG18327-PB | 304 | CG18327-PB | 109..300 | 1..192 | 622 | 56.8 | Plus |
CG18327-PA | 304 | CG18327-PA | 109..300 | 1..192 | 622 | 56.8 | Plus |
CG8323-PA | 303 | CG8323-PA | 109..300 | 1..192 | 558 | 52.6 | Plus |