Clone BS09314 Report

Search the DGRC for BS09314

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG18324-RA
Protein status:BS09314.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09314.3prime Sequence

630 bp (629 high quality bases) assembled on 2006-01-29

> BS09314.3prime
ATGGTCTAGAAAGCTTTCAGTTTCTGCGCTGGGAGAAAACATAACGATCT
CGCAAATGGAGCAACTTTTCAAAAAACACAAATGTCAAGGTGGTGTGTGG
AGCACTACGAAAGTATATGGGCCAAAAGCCCTTGTACATCCCATGGATCC
CTTCGGTTCTCCAGATTTTAGTGAAACAGTCCACCAAGCCCTTGTACATG
AGTCCACGCCCCTTTTCATCCACTGGCTGGTTGTACATCCGTGTGGTGAG
CACATCAAAGGGCGAATTGGCCACTGCCACAAGGGTTCCCGACGATAGGC
CGGCACAGAAGGAGAGGAGAACCGGATGGGTGATCCAGCCTTTATCCTTC
AGAAGGGACTTGGCTTTGGGAAAGGTGCCGATCTGTACACTGGAGGCCAC
AAGCGTTCGGTTCAAGCTTGGTAAAGCAGCGCGCCAGAATCCTGAAATGC
CATTGGTCCGGTAAATATGCAGCAGGGCATCCATCATCGAAGTATGCTTG
TGCTGAAAGCCTACGGCAATGGACTGAACCGCCTGGGCATGCTGTTGGGC
CTTTATCATGTAGAAGGGGCTGGCGAAATAGGTGCCCGTGCAGCCGCCCA
GAGCTCCAAAGAACATGTCGACTGATAACT

BS09314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-PB 924 CG18324-RB 324..924 617..17 3005 100 Minus
CG18324-PA 600 CG18324-RA 1..600 616..17 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-RA 1401 CG18324-RA 677..1278 617..16 3010 100 Minus
CG18324-RB 1118 CG18324-RB 394..995 617..16 3010 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14169569..14170110 557..16 2710 100 Minus
2R 25286936 2R 14169462..14169522 617..557 305 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:39:17 has no hits.

BS09314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:43 Download gff for BS09314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-PB 316..924 17..627 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:01 Download gff for BS09314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-PB 316..924 17..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:57 Download gff for BS09314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 386..995 16..627 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:24 Download gff for BS09314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 386..995 16..627 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:24 Download gff for BS09314.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14169454..14169522 557..627 94 -> Minus
2R 14169570..14170110 16..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:57 Download gff for BS09314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10056959..10057027 557..627 94 -> Minus
arm_2R 10057075..10057615 16..556 100   Minus

BS09314.5prime Sequence

630 bp (629 high quality bases) assembled on 2006-01-29

> BS09314.5prime
GAAGTTATCAGTCGACATGTTCTTTGGAGCTCTGGGCGGCTGCACGGGCA
CCTATTTCGCCAGCCCCTTCTACATGATAAAGGCCCAACAGCATGCCCAG
GCGGTTCAGTCCATTGCCGTAGGCTTTCAGCACAAGCATACTTCGATGAT
GGATGCCCTGCTGCATATTTACCGGACCAATGGCATTTCAGGATTCTGGC
GCGCTGCTTTACCAAGCTTGAACCGAACGCTTGTGGCCTCCAGTGTACAG
ATCGGCACCTTTCCCAAAGCCAAGTCCCTTCTGAAGGATAAAGGCTGGAT
CACCCATCCGGTTCTCCTCTCCTTCTGTGCCGGCCTATCGTCGGGAACCC
TTGTGGCAGTGGCCAATTCGCCCTTTGATGTGCTCACCACACGGATGTAC
AACCAGCCAGTGGATGAAAAGGGGCGTGGACTCATGTACAAGGGCTTGGT
GGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACA
AGGGCTTTTGGCCCATATACTTTCGTAGTGCTCCACACACCACCTTGACA
TTTGTGTTTTTTGAAAAGTTGCTCCATTTGCGAGATCGTTATGTTTTCTC
CCAGCGCAGAAACTGAAAGCTTTCTAGACC

BS09314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-PB 924 CG18324-RB 324..924 16..616 3005 100 Plus
CG18324-PA 600 CG18324-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-RA 1401 CG18324-RA 677..1278 16..617 3010 100 Plus
CG18324-RB 1118 CG18324-RB 394..995 16..617 3010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14169569..14170110 76..617 2710 100 Plus
2R 25286936 2R 14169462..14169522 16..76 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:48:11 has no hits.

BS09314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:44 Download gff for BS09314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-PB 316..924 6..616 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:03 Download gff for BS09314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-PB 316..924 6..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:53 Download gff for BS09314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 386..995 6..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:44 Download gff for BS09314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 386..995 6..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:44 Download gff for BS09314.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14169454..14169522 6..76 94 -> Plus
2R 14169570..14170110 77..617 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:53 Download gff for BS09314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10056959..10057027 6..76 94 -> Plus
arm_2R 10057075..10057615 77..617 100   Plus

BS09314.complete Sequence

632 bp (632 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636392

> BS09314.complete
GAAGTTATCAGTCGACATGTTCTTTGGAGCTCTGGGCGGCTGCACGGGCA
CCTATTTCGCCAGCCCCTTCTACATGATAAAGGCCCAACAGCATGCCCAG
GCGGTTCAGTCCATTGCCGTAGGCTTTCAGCACAAGCATACTTCGATGAT
GGATGCCCTGCTGCATATTTACCGGACCAATGGCATTTCAGGATTCTGGC
GCGCTGCTTTACCAAGCTTGAACCGAACGCTTGTGGCCTCCAGTGTACAG
ATCGGCACCTTTCCCAAAGCCAAGTCCCTTCTGAAGGATAAAGGCTGGAT
CACCCATCCGGTTCTCCTCTCCTTCTGTGCCGGCCTATCGTCGGGAACCC
TTGTGGCAGTGGCCAATTCGCCCTTTGATGTGCTCACCACACGGATGTAC
AACCAGCCAGTGGATGAAAAGGGGCGTGGACTCATGTACAAGGGCTTGGT
GGACTGTTTCACTAAAATCTGGAGAACCGAAGGGATCCATGGGATGTACA
AGGGCTTTTGGCCCATATACTTTCGTAGTGCTCCACACACCACCTTGACA
TTTGTGTTTTTTGAAAAGTTGCTCCATTTGCGAGATCGTTATGTTTTCTC
CCAGCGCAGAAACTGAAAGCTTTCTAGACCAT

BS09314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-RB 924 CG18324-PB 324..924 16..616 3005 100 Plus
CG18324-RA 600 CG18324-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-RA 1401 CG18324-RA 677..1278 16..617 3010 100 Plus
CG18324-RB 1118 CG18324-RB 394..995 16..617 3010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14169569..14170110 76..617 2710 100 Plus
2R 25286936 2R 14169462..14169522 16..76 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:04:27 has no hits.

BS09314.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:32 Download gff for BS09314.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 316..924 6..616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:57 Download gff for BS09314.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RA 585..1194 6..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:41 Download gff for BS09314.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 400..993 22..615 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:32 Download gff for BS09314.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RA 585..1194 6..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:17 Download gff for BS09314.complete
Subject Subject Range Query Range Percent Splice Strand
CG18324-RB 400..993 22..615 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:17 Download gff for BS09314.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14169468..14169522 22..76 100 -> Plus
2R 14169570..14170108 77..615 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:41 Download gff for BS09314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10056973..10057027 22..76 100 -> Plus
arm_2R 10057075..10057613 77..615 100   Plus

BS09314.pep Sequence

Translation from 16 to 615

> BS09314.pep
MFFGALGGCTGTYFASPFYMIKAQQHAQAVQSIAVGFQHKHTSMMDALLH
IYRTNGISGFWRAALPSLNRTLVASSVQIGTFPKAKSLLKDKGWITHPVL
LSFCAGLSSGTLVAVANSPFDVLTTRMYNQPVDEKGRGLMYKGLVDCFTK
IWRTEGIHGMYKGFWPIYFRSAPHTTLTFVFFEKLLHLRDRYVFSQRRN*

BS09314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG18324-PA 199 CG18324-PA 1..199 1..199 1062 100 Plus
CG18324-PB 307 CG18324-PB 109..307 1..199 1062 100 Plus
CG18327-PB 304 CG18327-PB 109..300 1..192 622 56.8 Plus
CG18327-PA 304 CG18327-PA 109..300 1..192 622 56.8 Plus
CG8323-PA 303 CG8323-PA 109..300 1..192 558 52.6 Plus