Clone Sequence Records
BS09319.3prime Sequence
906 bp (839 high quality bases) assembled on 2006-01-29
> BS09319.3prime
ATGGTCTAGAAAGCTTTCATCGCTTCAGGTGCTCCAGCATGTACTGCAGA
CAGCTGTGGTGGGCGGGCGGCAGGCGACGCACTGCCTCCGCCATGAGCTG
GCGCTGCTCGGCCTGCTTGCCGGTGCGTCCTGCTGCCATAAAGCTGGGAT
ACGCCTGGAATGTGATGAGCGGCACGGGCAGTAGGCGCAGGTAGAGCTTC
AGTGTGCCGGCGATCACATTCACATTGCCATACGCCGTCTCCGACATGTC
CGTCTTCTCGCCCTCGCGATCCAGGGCGAGCTTGAGTGCCTCGATCTCAT
CGGCAAAGCCGGAGACCCGATAGATACCCTCCTGCAGCATGCCCCGGGCC
TCCACCTCCTCCACGCAGCGGCGCACCACGAAGGGTATCTGGTGGTGGGG
CTCCAGCTGCACCATCGTGGTCAGATCCGTGCCAAATACGCCGCGTATGC
GCTTCAGATCCGGCACACACTTGGGCGGCACCAGTTCGGAGCACTTGCTG
TGCGCCACAAAGCCGCACGCCTCACACTTGACGCCCTGGGCGGTGAATCC
CCACAAGAAGTTGGCGCAGAACTCGCACCAGTTGAGCCCCTTAAACGTGT
GCACCTTGAAGTGATGCGGCTTCTCGTAGACCAGCGGCATGGGATCCACG
GCTGGAGGCGGTGGCTCCTCCTGCTTCTGCTCCTTCTCCTCGGCTGGCGA
TTCCTTCGATTCCTTGGCGGCGGCCTTGCCCAGCTCATTGGACAGAGCCC
TAAGTTTCCGGCCATTTAAAGTCATGTATGGGCTTTGCTGGTAGCAGTTC
TTGGTCTGTTGATTAATCTGCTGGATGATGGGACTGGCGTGGAGCTGCAT
GTGAAAGTTGATCAGCCCGTCGGCGACCATGTCGTGCACCGTGTCGAAGC
GCTTGT
BS09319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3208-PB | 1323 | RhoGAP5A-RB | 434..1323 | 906..17 | 4325 | 99.4 | Minus |
CG3208-PA | 1485 | RhoGAP5A-RA | 434..1319 | 906..21 | 4305 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP5A-RB | 1905 | CG3208-RB | 563..1453 | 906..16 | 4380 | 99.4 | Minus |
RhoGAP5A-RA | 1933 | CG3208-RA | 563..1448 | 906..21 | 4355 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5617308..5617788 | 126..606 | 2375 | 99.6 | Plus |
X | 23542271 | X | 5617855..5618159 | 602..906 | 1480 | 99 | Plus |
X | 23542271 | X | 5617117..5617226 | 17..126 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:50:49 has no hits.
BS09319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:50 Download gff for
BS09319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3208-PB | 434..1323 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:11 Download gff for
BS09319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3208-PB | 434..1323 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:02 Download gff for
BS09319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 563..1453 | 16..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:51 Download gff for
BS09319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 563..1453 | 16..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:51 Download gff for
BS09319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5617117..5617226 | 17..126 | 99 | <- | Plus |
X | 5617309..5617786 | 127..604 | 99 | <- | Plus |
X | 5617858..5618159 | 605..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:02 Download gff for
BS09319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5511150..5511259 | 17..126 | 99 | <- | Plus |
arm_X | 5511342..5511819 | 127..604 | 99 | <- | Plus |
arm_X | 5511891..5512192 | 605..906 | 99 | | Plus |
BS09319.5prime Sequence
958 bp (820 high quality bases) assembled on 2006-01-29
> BS09319.5prime
GAAGTTATCAGTCGACATGCCCCGGAACACGGAGGCGGGCGCCGGAAATG
CGAATACCGGTGGATCCGGCGGAGTAGGCGGTGCCCCCGAGCCCAGTTCT
CCGGTTCAGAAGGTTTGGAAGCCGGAATTGTACAAACTGCAGCTGGAGGC
ACCGGCTCCATGTCCACTGCGCTGCCAACGAACACTTCCCCTTCCGCCGG
CGAAAAGCACGGCTGAGGCCGTGGAGGCCAATAACTTGGCGGGCAGGCTA
TACGGCTCCGAGTACCATGGCCTGATGGGCCACCTGGAGGCGGAGCAGCT
GCTGGCCAATGCCCGCGACGGCAGCTACTTTGTACGCCGGAGCCCCCAAT
CCGATGGCTACTACACGCTGAGCCTGCGCTTCAACAAGCGACCCAAGCAC
TACAAGCTGCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGA
CAAGCGCTTCGACACGGTGCACGACATGGTCGCCGACGGGCTGATCAACT
TTCACATGCAGCTCCACGCCAGTCCCATCATCCAGCAGATTAATCAACAG
ACCAAGAACTGCTACCAGCAAAGCCCATACATGACTTTAAATGGCCGGAA
ACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGAATCGA
AGGAATCGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCT
CCAGCCGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCAA
GGTGCACACGTTTAAGGGGCTCAACTGGTGCGAGTTCTGCGCCAACTTCT
TGTGGGGATTCACCGCCCAGGGGCGTCAGTGTGAGGCGTGCGGCTTTGTG
GCGCACAGCAAGTGCTCCGAACTGGTGCCGCCCCAGTGTGTGCCGGATCT
GAAGCGCATACGCGGCGTATTTGGCACGGATCTGACCACGATGGTGCAGC
TGGAGCCC
BS09319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3208-PB | 1323 | RhoGAP5A-RB | 1..806 | 17..822 | 3830 | 99 | Plus |
CG3208-PA | 1485 | RhoGAP5A-RA | 1..806 | 17..822 | 3830 | 99 | Plus |
CG3208-PB | 1323 | RhoGAP5A-RB | 812..942 | 828..958 | 630 | 99.2 | Plus |
CG3208-PA | 1485 | RhoGAP5A-RA | 812..942 | 828..958 | 630 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP5A-RA | 1933 | CG3208-RA | 130..1071 | 17..958 | 4530 | 98.8 | Plus |
RhoGAP5A-RB | 1905 | CG3208-RB | 130..1071 | 17..958 | 4530 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5617855..5618480 | 754..129 | 3025 | 98.9 | Minus |
X | 23542271 | X | 5617580..5617788 | 958..750 | 940 | 96.7 | Minus |
X | 23542271 | X | 5618566..5618677 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:14:25 has no hits.
BS09319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:51 Download gff for
BS09319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3208-PB | 1..942 | 17..958 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:13 Download gff for
BS09319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3208-PA | 1..942 | 17..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:00 Download gff for
BS09319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 123..1071 | 10..958 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:38 Download gff for
BS09319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 123..1071 | 10..958 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:38 Download gff for
BS09319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5617580..5617786 | 752..958 | 98 | <- | Minus |
X | 5617858..5618480 | 129..751 | 98 | <- | Minus |
X | 5618566..5618680 | 10..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:00 Download gff for
BS09319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5511613..5511819 | 752..958 | 98 | <- | Minus |
arm_X | 5511891..5512513 | 129..751 | 98 | <- | Minus |
arm_X | 5512599..5512713 | 10..128 | 96 | | Minus |
BS09319.complete Sequence
1355 bp (1355 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636393
> BS09319.complete
GAAGTTATCAGTCGACATGCCCCGGAACACGGAGGCGGGCGCCGGAAATG
CGAATACCGGTGGATCCGGCGGAGTAGGCGGTGCCCCCGAGCCCAGTTCT
CCGGTTCAGAAGGTTTGGAAGCCGGAATTGTACAAACTGCAGCTGGAGGC
ACCGGCTCCATGTCCACTGCGCTGCCAACGAACACTTCCCCTTCCGCCGG
CGAAAAGCACGGCTGAGGCCGTGGAGGCCAATAACTTGGCGGGCAGGCTA
TACGGCTCCGAGTACCATGGCCTGATGGGCCACCTGGAGGCGGAGCAGCT
GCTGGCCAATGCCCGCGACGGCAGCTACTTTGTACGCCGGAGCCCCCAAT
CCGATGGCTACTACACGCTGAGCCTGCGCTTCAACAAGCGACCCAAGCAC
TACAAGCTGCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGA
CAAGCGCTTCGACACGGTGCACGACATGGTCGCCGACGGGCTGATCAACT
TTCACATGCAGCTCCACGCCAGTCCCATCATCCAGCAGATTAATCAACAG
ACCAAGAACTGCTACCAGCAAAGCCCATACATGACTTTAAATGGCCGGAA
ACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGAATCGA
AGGAATCGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCT
CCAGCCGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCAA
GGTGCACACGTTTAAGGGGCTCAACTGGTGCGAGTTCTGCGCCAACTTCT
TGTGGGGATTCACCGCCCAGGGCGTCAAGTGTGAGGCGTGCGGCTTTGTG
GCGCACAGCAAGTGCTCCGAACTGGTGCCGCCCAAGTGTGTGCCGGATCT
GAAGCGCATACGCGGCGTATTTGGCACGGATCTGACCACGATGGTGCAGC
TGGAGCCCCACCACCAGATACCCTTCGTGGTGCGCCGCTGCGTGGAGGAG
GTGGAGGCCCGGGGCATGCTGCAGGAGGGTATCTATCGGGTCTCCGGCTT
TGCCGATGAGATCGAGGCACTCAAGCTCGCCCTGGATCGCGAGGGCGAGA
AGACGGACATGTCGGAGACGGCGTATGGCAATGTGAATGTGATCGCCGGC
ACACTGAAGCTCTACCTGCGCCTACTGCCCGTGCCGCTCATCACATTCCA
GGCGTATCCCAGCTTTATGGCAGCAGGACGCACCGGCAAGCAGGCCGAGC
AGCGCCAGCTCATGGCGGAGGCAGTGCGTCGCCTGCCGCCCGCCCACCAC
AGCTGTCTGCAGTACATGCTGGAGCACCTGAAGCGATGAAAGCTTTCTAG
ACCAT
BS09319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP5A-RB | 1323 | CG3208-PB | 1..1323 | 17..1339 | 6480 | 99.3 | Plus |
RhoGAP5A-RA | 1485 | CG3208-PA | 1..1319 | 17..1335 | 6460 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP5A-RB | 1905 | CG3208-RB | 130..1453 | 17..1340 | 6485 | 99.3 | Plus |
RhoGAP5A-RA | 1933 | CG3208-RA | 130..1448 | 17..1335 | 6460 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5617855..5618480 | 754..129 | 3025 | 98.9 | Minus |
X | 23542271 | X | 5617308..5617788 | 1230..750 | 2375 | 99.6 | Minus |
X | 23542271 | X | 5618566..5618677 | 128..17 | 560 | 100 | Minus |
X | 23542271 | X | 5617117..5617226 | 1339..1230 | 535 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:41:24 has no hits.
BS09319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:39 Download gff for
BS09319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 1..1323 | 17..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:08 Download gff for
BS09319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 118..1448 | 10..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:43 Download gff for
BS09319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 130..1451 | 17..1338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:39 Download gff for
BS09319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 118..1448 | 10..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:05 Download gff for
BS09319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP5A-RB | 130..1451 | 17..1338 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:05 Download gff for
BS09319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5617118..5617226 | 1230..1338 | 99 | <- | Minus |
X | 5617309..5617786 | 752..1229 | 99 | <- | Minus |
X | 5617858..5618480 | 129..751 | 98 | <- | Minus |
X | 5618566..5618677 | 17..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:43 Download gff for
BS09319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5511151..5511259 | 1230..1338 | 99 | <- | Minus |
arm_X | 5511342..5511819 | 752..1229 | 99 | <- | Minus |
arm_X | 5511891..5512513 | 129..751 | 98 | <- | Minus |
arm_X | 5512599..5512710 | 17..128 | 100 | | Minus |
BS09319.pep Sequence
Translation from 16 to 1338
> BS09319.pep
MPRNTEAGAGNANTGGSGGVGGAPEPSSPVQKVWKPELYKLQLEAPAPCP
LRCQRTLPLPPAKSTAEAVEANNLAGRLYGSEYHGLMGHLEAEQLLANAR
DGSYFVRRSPQSDGYYTLSLRFNKRPKHYKLLYKPGVGHYLRGQDKRFDT
VHDMVADGLINFHMQLHASPIIQQINQQTKNCYQQSPYMTLNGRKLRALS
NELGKAAAKESKESPAEEKEQKQEEPPPPAVDPMPLVYEKPHHFKVHTFK
GLNWCEFCANFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPDLKRIRG
VFGTDLTTMVQLEPHHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIE
ALKLALDREGEKTDMSETAYGNVNVIAGTLKLYLRLLPVPLITFQAYPSF
MAAGRTGKQAEQRQLMAEAVRRLPPAHHSCLQYMLEHLKR*
BS09319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP5A-PA | 494 | CG3208-PA | 1..440 | 1..440 | 2349 | 100 | Plus |
RhoGAP5A-PB | 440 | CG3208-PB | 1..440 | 1..440 | 2349 | 100 | Plus |
RhoGAP100F-PB | 1191 | CG1976-PB | 945..1090 | 301..438 | 204 | 36.3 | Plus |
RhoGAP100F-PE | 1200 | CG1976-PE | 934..1079 | 301..438 | 204 | 36.3 | Plus |
RhoGAP100F-PJ | 1297 | CG1976-PJ | 945..1090 | 301..438 | 204 | 36.3 | Plus |