Clone BS09319 Report

Search the DGRC for BS09319

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptRhoGAP5A-RB
Protein status:BS09319.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09319.3prime Sequence

906 bp (839 high quality bases) assembled on 2006-01-29

> BS09319.3prime
ATGGTCTAGAAAGCTTTCATCGCTTCAGGTGCTCCAGCATGTACTGCAGA
CAGCTGTGGTGGGCGGGCGGCAGGCGACGCACTGCCTCCGCCATGAGCTG
GCGCTGCTCGGCCTGCTTGCCGGTGCGTCCTGCTGCCATAAAGCTGGGAT
ACGCCTGGAATGTGATGAGCGGCACGGGCAGTAGGCGCAGGTAGAGCTTC
AGTGTGCCGGCGATCACATTCACATTGCCATACGCCGTCTCCGACATGTC
CGTCTTCTCGCCCTCGCGATCCAGGGCGAGCTTGAGTGCCTCGATCTCAT
CGGCAAAGCCGGAGACCCGATAGATACCCTCCTGCAGCATGCCCCGGGCC
TCCACCTCCTCCACGCAGCGGCGCACCACGAAGGGTATCTGGTGGTGGGG
CTCCAGCTGCACCATCGTGGTCAGATCCGTGCCAAATACGCCGCGTATGC
GCTTCAGATCCGGCACACACTTGGGCGGCACCAGTTCGGAGCACTTGCTG
TGCGCCACAAAGCCGCACGCCTCACACTTGACGCCCTGGGCGGTGAATCC
CCACAAGAAGTTGGCGCAGAACTCGCACCAGTTGAGCCCCTTAAACGTGT
GCACCTTGAAGTGATGCGGCTTCTCGTAGACCAGCGGCATGGGATCCACG
GCTGGAGGCGGTGGCTCCTCCTGCTTCTGCTCCTTCTCCTCGGCTGGCGA
TTCCTTCGATTCCTTGGCGGCGGCCTTGCCCAGCTCATTGGACAGAGCCC
TAAGTTTCCGGCCATTTAAAGTCATGTATGGGCTTTGCTGGTAGCAGTTC
TTGGTCTGTTGATTAATCTGCTGGATGATGGGACTGGCGTGGAGCTGCAT
GTGAAAGTTGATCAGCCCGTCGGCGACCATGTCGTGCACCGTGTCGAAGC
GCTTGT

BS09319.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3208-PB 1323 RhoGAP5A-RB 434..1323 906..17 4325 99.4 Minus
CG3208-PA 1485 RhoGAP5A-RA 434..1319 906..21 4305 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP5A-RB 1905 CG3208-RB 563..1453 906..16 4380 99.4 Minus
RhoGAP5A-RA 1933 CG3208-RA 563..1448 906..21 4355 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5617308..5617788 126..606 2375 99.6 Plus
X 23542271 X 5617855..5618159 602..906 1480 99 Plus
X 23542271 X 5617117..5617226 17..126 535 99.1 Plus
Blast to na_te.dros performed on 2015-02-02 17:50:49 has no hits.

BS09319.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:50 Download gff for BS09319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3208-PB 434..1323 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:11 Download gff for BS09319.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3208-PB 434..1323 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:28:02 Download gff for BS09319.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 563..1453 16..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:48:51 Download gff for BS09319.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 563..1453 16..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:48:51 Download gff for BS09319.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5617117..5617226 17..126 99 <- Plus
X 5617309..5617786 127..604 99 <- Plus
X 5617858..5618159 605..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:28:02 Download gff for BS09319.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5511150..5511259 17..126 99 <- Plus
arm_X 5511342..5511819 127..604 99 <- Plus
arm_X 5511891..5512192 605..906 99   Plus

BS09319.5prime Sequence

958 bp (820 high quality bases) assembled on 2006-01-29

> BS09319.5prime
GAAGTTATCAGTCGACATGCCCCGGAACACGGAGGCGGGCGCCGGAAATG
CGAATACCGGTGGATCCGGCGGAGTAGGCGGTGCCCCCGAGCCCAGTTCT
CCGGTTCAGAAGGTTTGGAAGCCGGAATTGTACAAACTGCAGCTGGAGGC
ACCGGCTCCATGTCCACTGCGCTGCCAACGAACACTTCCCCTTCCGCCGG
CGAAAAGCACGGCTGAGGCCGTGGAGGCCAATAACTTGGCGGGCAGGCTA
TACGGCTCCGAGTACCATGGCCTGATGGGCCACCTGGAGGCGGAGCAGCT
GCTGGCCAATGCCCGCGACGGCAGCTACTTTGTACGCCGGAGCCCCCAAT
CCGATGGCTACTACACGCTGAGCCTGCGCTTCAACAAGCGACCCAAGCAC
TACAAGCTGCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGA
CAAGCGCTTCGACACGGTGCACGACATGGTCGCCGACGGGCTGATCAACT
TTCACATGCAGCTCCACGCCAGTCCCATCATCCAGCAGATTAATCAACAG
ACCAAGAACTGCTACCAGCAAAGCCCATACATGACTTTAAATGGCCGGAA
ACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGAATCGA
AGGAATCGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCT
CCAGCCGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCAA
GGTGCACACGTTTAAGGGGCTCAACTGGTGCGAGTTCTGCGCCAACTTCT
TGTGGGGATTCACCGCCCAGGGGCGTCAGTGTGAGGCGTGCGGCTTTGTG
GCGCACAGCAAGTGCTCCGAACTGGTGCCGCCCCAGTGTGTGCCGGATCT
GAAGCGCATACGCGGCGTATTTGGCACGGATCTGACCACGATGGTGCAGC
TGGAGCCC

BS09319.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3208-PB 1323 RhoGAP5A-RB 1..806 17..822 3830 99 Plus
CG3208-PA 1485 RhoGAP5A-RA 1..806 17..822 3830 99 Plus
CG3208-PB 1323 RhoGAP5A-RB 812..942 828..958 630 99.2 Plus
CG3208-PA 1485 RhoGAP5A-RA 812..942 828..958 630 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP5A-RA 1933 CG3208-RA 130..1071 17..958 4530 98.8 Plus
RhoGAP5A-RB 1905 CG3208-RB 130..1071 17..958 4530 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5617855..5618480 754..129 3025 98.9 Minus
X 23542271 X 5617580..5617788 958..750 940 96.7 Minus
X 23542271 X 5618566..5618677 128..17 560 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:14:25 has no hits.

BS09319.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:05:51 Download gff for BS09319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3208-PB 1..942 17..958 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:13 Download gff for BS09319.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3208-PA 1..942 17..958 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:00 Download gff for BS09319.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 123..1071 10..958 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:38 Download gff for BS09319.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 123..1071 10..958 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:38 Download gff for BS09319.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5617580..5617786 752..958 98 <- Minus
X 5617858..5618480 129..751 98 <- Minus
X 5618566..5618680 10..128 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:00 Download gff for BS09319.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5511613..5511819 752..958 98 <- Minus
arm_X 5511891..5512513 129..751 98 <- Minus
arm_X 5512599..5512713 10..128 96   Minus

BS09319.complete Sequence

1355 bp (1355 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636393

> BS09319.complete
GAAGTTATCAGTCGACATGCCCCGGAACACGGAGGCGGGCGCCGGAAATG
CGAATACCGGTGGATCCGGCGGAGTAGGCGGTGCCCCCGAGCCCAGTTCT
CCGGTTCAGAAGGTTTGGAAGCCGGAATTGTACAAACTGCAGCTGGAGGC
ACCGGCTCCATGTCCACTGCGCTGCCAACGAACACTTCCCCTTCCGCCGG
CGAAAAGCACGGCTGAGGCCGTGGAGGCCAATAACTTGGCGGGCAGGCTA
TACGGCTCCGAGTACCATGGCCTGATGGGCCACCTGGAGGCGGAGCAGCT
GCTGGCCAATGCCCGCGACGGCAGCTACTTTGTACGCCGGAGCCCCCAAT
CCGATGGCTACTACACGCTGAGCCTGCGCTTCAACAAGCGACCCAAGCAC
TACAAGCTGCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGA
CAAGCGCTTCGACACGGTGCACGACATGGTCGCCGACGGGCTGATCAACT
TTCACATGCAGCTCCACGCCAGTCCCATCATCCAGCAGATTAATCAACAG
ACCAAGAACTGCTACCAGCAAAGCCCATACATGACTTTAAATGGCCGGAA
ACTTAGGGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGAATCGA
AGGAATCGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCT
CCAGCCGTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCAA
GGTGCACACGTTTAAGGGGCTCAACTGGTGCGAGTTCTGCGCCAACTTCT
TGTGGGGATTCACCGCCCAGGGCGTCAAGTGTGAGGCGTGCGGCTTTGTG
GCGCACAGCAAGTGCTCCGAACTGGTGCCGCCCAAGTGTGTGCCGGATCT
GAAGCGCATACGCGGCGTATTTGGCACGGATCTGACCACGATGGTGCAGC
TGGAGCCCCACCACCAGATACCCTTCGTGGTGCGCCGCTGCGTGGAGGAG
GTGGAGGCCCGGGGCATGCTGCAGGAGGGTATCTATCGGGTCTCCGGCTT
TGCCGATGAGATCGAGGCACTCAAGCTCGCCCTGGATCGCGAGGGCGAGA
AGACGGACATGTCGGAGACGGCGTATGGCAATGTGAATGTGATCGCCGGC
ACACTGAAGCTCTACCTGCGCCTACTGCCCGTGCCGCTCATCACATTCCA
GGCGTATCCCAGCTTTATGGCAGCAGGACGCACCGGCAAGCAGGCCGAGC
AGCGCCAGCTCATGGCGGAGGCAGTGCGTCGCCTGCCGCCCGCCCACCAC
AGCTGTCTGCAGTACATGCTGGAGCACCTGAAGCGATGAAAGCTTTCTAG
ACCAT

BS09319.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP5A-RB 1323 CG3208-PB 1..1323 17..1339 6480 99.3 Plus
RhoGAP5A-RA 1485 CG3208-PA 1..1319 17..1335 6460 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP5A-RB 1905 CG3208-RB 130..1453 17..1340 6485 99.3 Plus
RhoGAP5A-RA 1933 CG3208-RA 130..1448 17..1335 6460 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5617855..5618480 754..129 3025 98.9 Minus
X 23542271 X 5617308..5617788 1230..750 2375 99.6 Minus
X 23542271 X 5618566..5618677 128..17 560 100 Minus
X 23542271 X 5617117..5617226 1339..1230 535 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 01:41:24 has no hits.

BS09319.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:39 Download gff for BS09319.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 1..1323 17..1339 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:28:08 Download gff for BS09319.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 118..1448 10..1340 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:43 Download gff for BS09319.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 130..1451 17..1338 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:39 Download gff for BS09319.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 118..1448 10..1340 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:05 Download gff for BS09319.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP5A-RB 130..1451 17..1338 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:05 Download gff for BS09319.complete
Subject Subject Range Query Range Percent Splice Strand
X 5617118..5617226 1230..1338 99 <- Minus
X 5617309..5617786 752..1229 99 <- Minus
X 5617858..5618480 129..751 98 <- Minus
X 5618566..5618677 17..128 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:43 Download gff for BS09319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5511151..5511259 1230..1338 99 <- Minus
arm_X 5511342..5511819 752..1229 99 <- Minus
arm_X 5511891..5512513 129..751 98 <- Minus
arm_X 5512599..5512710 17..128 100   Minus

BS09319.pep Sequence

Translation from 16 to 1338

> BS09319.pep
MPRNTEAGAGNANTGGSGGVGGAPEPSSPVQKVWKPELYKLQLEAPAPCP
LRCQRTLPLPPAKSTAEAVEANNLAGRLYGSEYHGLMGHLEAEQLLANAR
DGSYFVRRSPQSDGYYTLSLRFNKRPKHYKLLYKPGVGHYLRGQDKRFDT
VHDMVADGLINFHMQLHASPIIQQINQQTKNCYQQSPYMTLNGRKLRALS
NELGKAAAKESKESPAEEKEQKQEEPPPPAVDPMPLVYEKPHHFKVHTFK
GLNWCEFCANFLWGFTAQGVKCEACGFVAHSKCSELVPPKCVPDLKRIRG
VFGTDLTTMVQLEPHHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIE
ALKLALDREGEKTDMSETAYGNVNVIAGTLKLYLRLLPVPLITFQAYPSF
MAAGRTGKQAEQRQLMAEAVRRLPPAHHSCLQYMLEHLKR*

BS09319.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP5A-PA 494 CG3208-PA 1..440 1..440 2349 100 Plus
RhoGAP5A-PB 440 CG3208-PB 1..440 1..440 2349 100 Plus
RhoGAP100F-PB 1191 CG1976-PB 945..1090 301..438 204 36.3 Plus
RhoGAP100F-PE 1200 CG1976-PE 934..1079 301..438 204 36.3 Plus
RhoGAP100F-PJ 1297 CG1976-PJ 945..1090 301..438 204 36.3 Plus