Clone BS09323 Report

Search the DGRC for BS09323

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptNiPp1-RA
Protein status:BS09323.pep: full length peptide match
Sequenced Size:1184

Clone Sequence Records

BS09323.3prime Sequence

931 bp (803 high quality bases) assembled on 2006-01-29

> BS09323.3prime
ATGGTCTAGAAAGCTTTTACAGCTGCCCCAACATGGGCTTGCGACCTGGC
CATGCTTCCTTGGCGTATTTCTTTTTCTGTGGGCACAGCGAATCGCCTTC
GCCACTCGAGTCATGCGGATCCTCACCAAAGCGACGAACGTTTGCATTAG
CGACGGCCAACTTTTGAGCCAATGTCGAGGTCTCCACAGCTTCGTCATAG
ACTGGCAGCACTTCAGGCGCAGGATTCGGGAGCAATAGGCCCAACTTGGA
ACCAATGCTCAGCGGGGAGATGGGCTCTAGGTCACCCTTGCCATGCATTT
CGGCCGGTAGACCTTGATATAGGGAATTAGTAGGCGAGTGGAGCACCGCA
TTGGGCGGAGGCATTTCCCTATGCTGCTGCTTCATGTCAACTAGGCTCTG
CTGGAACATTTGGTGTACATGTGCGGCATTGGCACTGGACAAACTGCTGT
TGCCCGAATGGATGCCCATATGGTTGACGTCGCAGCGTGCCCTCTTGGCG
GGCACCACAGTGGTTTGTACCAAGTTCCTGAAGCGTCCCACATTAGGATC
CACATCCTCAGGATTGATGACAATCTCCTCATCGTTAAATGTGACATTTC
GAGTGCGCCGTCCCTGTTTCAAGGCGTTTTGCTTTCGCATATTGGTATCA
TCATCGATGCCCAGCATTGAGATGCGCCGATTGTGGGCCGTGTTGTATTC
TGTAAGATTATCAAGCTCCGTTTGGCTTTCGGGCAGGCCCAGGAGAGCGC
CATCGCTGGTTTCACTGAGCGGCAGGTCTTCCATGATGTTGCTGTGGTGG
CCAGAGGGTCGTTCCCTGAGTATGTAGTTCCGGGTAGAAGCCCCAAAGTG
GAAGGTGCTATTAATCTGCAGCTGTGTGGGCTTGTGCGCTTCAAATCTGA
GTGTTCCAATAAGGTGGCATGAGTGGACCCC

BS09323.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8980-PA 1152 NiPp1-RA 257..1152 912..17 4305 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
NiPp1-RA 1349 CG8980-RA 328..1243 931..17 4435 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17003851..17004421 139..709 2795 99.3 Plus
2R 25286936 2R 17004483..17004685 710..912 970 98.5 Plus
2R 25286936 2R 17003669..17003791 17..139 615 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:18:00 has no hits.

BS09323.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:00 Download gff for BS09323.3prime
Subject Subject Range Query Range Percent Splice Strand
NiPp1-PA 237..1152 17..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:23 Download gff for BS09323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8980-PA 237..1152 17..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:09 Download gff for BS09323.3prime
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 328..1247 13..931 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:05 Download gff for BS09323.3prime
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 328..1247 13..931 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:05 Download gff for BS09323.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17003665..17003790 13..138 98 <- Plus
2R 17003851..17004421 139..709 99 <- Plus
2R 17004483..17004697 710..923 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:09 Download gff for BS09323.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12891170..12891295 13..138 98 <- Plus
arm_2R 12891356..12891926 139..709 99 <- Plus
arm_2R 12891988..12892202 710..923 97   Plus

BS09323.5prime Sequence

906 bp (784 high quality bases) assembled on 2006-01-29

> BS09323.5prime
GAAGTTATCAGTCGACATGGCTAACAGCTACGACATTCCCAGTTGGGCTG
GAAAACCGCCCACTGGCTTACATCTGGATGTGCTAAAGGACGACAAACTA
GTACAAAAACTGATGGTGGATGAAAAAAGATGCTATCTATTTGGTCGCAA
CAGTCAAATGAACGACTTCTGCATAGACCATGCCTCTTGTTCGCGGGTCC
ACTCGGCTTTTGTCTACCACAAGCACCTCAACATAGCCTACCTCGTGGAT
CTGGGGTCCACTCATGGCACCTTTATTGGAACACTCAGATTGGAAGCGCA
CAAGCCCACACAGCTGCAGATTAATAGCACCTTCCACTTTGGGGCTTCTA
CCCGGAACTACATACTCAGGGAACGACCCTCTGGCCACCACAGCAACATC
ATGGAAGACCTGCCGCTCAGTGAAACCAGCGATGGCGCTCTCCTGGGCCT
GCCCGAAAGCCAAACGGAGCTTGATAATCTTACAGAATACAACACGGCCC
ACAATCGGCGCATCTCAATGCTGGGCATCGATGATGATACCAATATGCGA
AAGCAAAACGCCTTGAAACAGGGACGGCGCACTCGAAATGTCACATTTAA
CGATGAGGAGATTGTCATCAATCCTGAGGATGTGGATCCTAATGTGGGAC
GCTTCAGGAACTTGGTACAAACCACTGTGGTGCCCGCCAAGAGGGCACGC
TGCGACGTCAACCATATGGGCATCCATTCGGGCAACAGCAGTTTGTCCAG
TGCCAATGCCGCACATGTACACCAAATGTTCCAGCAGAGCCTAGTTGACA
TGAAGCAGCAGCATAGGGAAATGCCTCCGCCCAATGCGGTGCTCCACTCG
CCTACTAATTCCCTATATCAAGGTCTACCGGCCGAAATGCATGGCAAGGG
TGACCT

BS09323.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8980-PA 1152 NiPp1-RA 1..890 17..906 4250 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
NiPp1-RA 1349 CG8980-RA 92..981 17..906 4330 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17003991..17004421 906..476 2095 99.1 Minus
2R 25286936 2R 17004753..17004968 260..45 1065 99.5 Minus
2R 25286936 2R 17004483..17004697 475..261 1045 99.1 Minus
Blast to na_te.dros performed on 2015-02-11 11:06:49 has no hits.

BS09323.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:01 Download gff for BS09323.5prime
Subject Subject Range Query Range Percent Splice Strand
NiPp1-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:24 Download gff for BS09323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8980-PA 1..890 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:06:06 Download gff for BS09323.5prime
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 89..981 10..906 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:14 Download gff for BS09323.5prime
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 89..981 10..906 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:14 Download gff for BS09323.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17004753..17004967 46..260 99 <- Minus
2R 17003991..17004421 476..906 99 <- Minus
2R 17004483..17004697 261..475 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:06:06 Download gff for BS09323.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12891496..12891926 476..906 99 <- Minus
arm_2R 12891988..12892202 261..475 99 <- Minus
arm_2R 12892258..12892472 46..260 99 <- Minus

BS09323.complete Sequence

1184 bp assembled on 2008-08-15

GenBank Submission: FJ636394

> BS09323.complete
GAAGTTATCAGTCGACATGGCTAACAGCTACGACATTCCCAGTTGGGCTG
GAAAACCGCCCACTGGCTTACATCTGGATGTGCTAAAGGACGACAAACTA
GTACAAAAACTGATGGTGGATGAAAAAAGATGCTATCTATTTGGTCGCAA
CAGTCAAATGAACGACTTCTGCATAGACCATGCCTCTTGTTCGCGGGTCC
ACTCGGCTTTTGTCTACCACAAGCACCTCAACATAGCCTACCTCGTGGAT
CTGGGGTCCACTCATGGCACCTTTATTGGAACACTCAGATTGGAAGCGCA
CAAGCCCACACAGCTGCAGATTAATAGCACCTTCCACTTTGGGGCTTCTA
CCCGGAACTACATACTCAGGGAACGACCCTCTGGCCACCACAGCAACATC
ATGGAAGACCTGCCGCTCAGTGAAACCAGCGATGGCGCTCTCCTGGGCCT
GCCCGAAAGCCAAACGGAGCTTGATAATCTTACAGAATACAACACGGCCC
ACAATCGGCGCATCTCAATGCTGGGCATCGATGATGATACCAATATGCGA
AAGCAAAACGCCTTGAAACAGGGACGGCGCACTCGAAATGTCACATTTAA
CGATGAGGAGATTGTCATCAATCCTGAGGATGTGGATCCTAATGTGGGAC
GCTTCAGGAACTTGGTACAAACCACTGTGGTGCCCGCCAAGAGGGCACGC
TGCGACGTCAACCATATGGGCATCCATTCGGGCAACAGCAGTTTGTCCAG
TGCCAATGCCGCACATGTACACCAAATGTTCCAGCAGAGCCTAGTTGACA
TGAAGCAGCAGCATAGGGAAATGCCTCCGCCCAATGCGGTGCTCCACTCG
CCTACTAATTCCCTATATCAAGGTCTACCGGCCGAAATGCATGGCAAGGG
TGACCTAGAGCCCATCTCCCCGCTGAGCATTGGTTCCAAGTTGGGCCTAT
TGCTCCCGAATCCTGCGCCTGAAGTGCTGCCAGTCTATGACGAAGCTGTG
GAGACCTCGACATTGGCTCAAAAGTTGGCCGTCGCTAATGCAAACGTTCG
TCGCTTTGGTGAGGATCCGCATGACTCGAGTGGCGAAGGCGATTCGCTGT
GCCCACAGAAAAAGAAATACGCCAAGGAAGCATGGCCAGGTCGCAAGCCC
ATGTTGGGGCAGCTGTAAAAGCTTTCTAGACCAT

BS09323.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
NiPp1-RA 1152 CG8980-PA 1..1152 17..1168 5640 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
NiPp1-RA 1349 CG8980-RA 92..1243 17..1168 5640 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17003851..17004421 1046..476 2795 99.3 Minus
2R 25286936 2R 17004753..17004968 260..45 1065 99.5 Minus
2R 25286936 2R 17004483..17004697 475..261 1045 99.1 Minus
2R 25286936 2R 17003669..17003791 1168..1046 615 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:24:32 has no hits.

BS09323.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:21 Download gff for BS09323.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 39..1197 10..1172 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:17 Download gff for BS09323.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 92..1241 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:34 Download gff for BS09323.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 42..1191 17..1166 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:00 Download gff for BS09323.complete
Subject Subject Range Query Range Percent Splice Strand
NiPp1-RA 92..1241 17..1166 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:00 Download gff for BS09323.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17003671..17003790 1047..1166 100 <- Minus
2R 17003851..17004421 476..1046 99 <- Minus
2R 17004483..17004697 261..475 99 <- Minus
2R 17004753..17004967 46..260 99 <- Minus
2R 17005030..17005058 17..45 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:17 Download gff for BS09323.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12891176..12891295 1047..1166 100 <- Minus
arm_2R 12891356..12891926 476..1046 99 <- Minus
arm_2R 12891988..12892202 261..475 99 <- Minus
arm_2R 12892258..12892472 46..260 99 <- Minus
arm_2R 12892535..12892563 17..45 96   Minus

BS09323.pep Sequence

Translation from 16 to 1167

> BS09323.pep
MANSYDIPSWAGKPPTGLHLDVLKDDKLVQKLMVDEKRCYLFGRNSQMND
FCIDHASCSRVHSAFVYHKHLNIAYLVDLGSTHGTFIGTLRLEAHKPTQL
QINSTFHFGASTRNYILRERPSGHHSNIMEDLPLSETSDGALLGLPESQT
ELDNLTEYNTAHNRRISMLGIDDDTNMRKQNALKQGRRTRNVTFNDEEIV
INPEDVDPNVGRFRNLVQTTVVPAKRARCDVNHMGIHSGNSSLSSANAAH
VHQMFQQSLVDMKQQHREMPPPNAVLHSPTNSLYQGLPAEMHGKGDLEPI
SPLSIGSKLGLLLPNPAPEVLPVYDEAVETSTLAQKLAVANANVRRFGED
PHDSSGEGDSLCPQKKKYAKEAWPGRKPMLGQL*

BS09323.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
NiPp1-PA 383 CG8980-PA 1..383 1..383 2025 100 Plus
CG17168-PA 421 CG17168-PA 268..399 5..131 168 31.2 Plus