Clone Sequence Records
BS09323.3prime Sequence
931 bp (803 high quality bases) assembled on 2006-01-29
> BS09323.3prime
ATGGTCTAGAAAGCTTTTACAGCTGCCCCAACATGGGCTTGCGACCTGGC
CATGCTTCCTTGGCGTATTTCTTTTTCTGTGGGCACAGCGAATCGCCTTC
GCCACTCGAGTCATGCGGATCCTCACCAAAGCGACGAACGTTTGCATTAG
CGACGGCCAACTTTTGAGCCAATGTCGAGGTCTCCACAGCTTCGTCATAG
ACTGGCAGCACTTCAGGCGCAGGATTCGGGAGCAATAGGCCCAACTTGGA
ACCAATGCTCAGCGGGGAGATGGGCTCTAGGTCACCCTTGCCATGCATTT
CGGCCGGTAGACCTTGATATAGGGAATTAGTAGGCGAGTGGAGCACCGCA
TTGGGCGGAGGCATTTCCCTATGCTGCTGCTTCATGTCAACTAGGCTCTG
CTGGAACATTTGGTGTACATGTGCGGCATTGGCACTGGACAAACTGCTGT
TGCCCGAATGGATGCCCATATGGTTGACGTCGCAGCGTGCCCTCTTGGCG
GGCACCACAGTGGTTTGTACCAAGTTCCTGAAGCGTCCCACATTAGGATC
CACATCCTCAGGATTGATGACAATCTCCTCATCGTTAAATGTGACATTTC
GAGTGCGCCGTCCCTGTTTCAAGGCGTTTTGCTTTCGCATATTGGTATCA
TCATCGATGCCCAGCATTGAGATGCGCCGATTGTGGGCCGTGTTGTATTC
TGTAAGATTATCAAGCTCCGTTTGGCTTTCGGGCAGGCCCAGGAGAGCGC
CATCGCTGGTTTCACTGAGCGGCAGGTCTTCCATGATGTTGCTGTGGTGG
CCAGAGGGTCGTTCCCTGAGTATGTAGTTCCGGGTAGAAGCCCCAAAGTG
GAAGGTGCTATTAATCTGCAGCTGTGTGGGCTTGTGCGCTTCAAATCTGA
GTGTTCCAATAAGGTGGCATGAGTGGACCCC
BS09323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8980-PA | 1152 | NiPp1-RA | 257..1152 | 912..17 | 4305 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NiPp1-RA | 1349 | CG8980-RA | 328..1243 | 931..17 | 4435 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17003851..17004421 | 139..709 | 2795 | 99.3 | Plus |
2R | 25286936 | 2R | 17004483..17004685 | 710..912 | 970 | 98.5 | Plus |
2R | 25286936 | 2R | 17003669..17003791 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:18:00 has no hits.
BS09323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:00 Download gff for
BS09323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-PA | 237..1152 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:23 Download gff for
BS09323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8980-PA | 237..1152 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:09 Download gff for
BS09323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-RA | 328..1247 | 13..931 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:05 Download gff for
BS09323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-RA | 328..1247 | 13..931 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:05 Download gff for
BS09323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17003665..17003790 | 13..138 | 98 | <- | Plus |
2R | 17003851..17004421 | 139..709 | 99 | <- | Plus |
2R | 17004483..17004697 | 710..923 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:09 Download gff for
BS09323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12891170..12891295 | 13..138 | 98 | <- | Plus |
arm_2R | 12891356..12891926 | 139..709 | 99 | <- | Plus |
arm_2R | 12891988..12892202 | 710..923 | 97 | | Plus |
BS09323.5prime Sequence
906 bp (784 high quality bases) assembled on 2006-01-29
> BS09323.5prime
GAAGTTATCAGTCGACATGGCTAACAGCTACGACATTCCCAGTTGGGCTG
GAAAACCGCCCACTGGCTTACATCTGGATGTGCTAAAGGACGACAAACTA
GTACAAAAACTGATGGTGGATGAAAAAAGATGCTATCTATTTGGTCGCAA
CAGTCAAATGAACGACTTCTGCATAGACCATGCCTCTTGTTCGCGGGTCC
ACTCGGCTTTTGTCTACCACAAGCACCTCAACATAGCCTACCTCGTGGAT
CTGGGGTCCACTCATGGCACCTTTATTGGAACACTCAGATTGGAAGCGCA
CAAGCCCACACAGCTGCAGATTAATAGCACCTTCCACTTTGGGGCTTCTA
CCCGGAACTACATACTCAGGGAACGACCCTCTGGCCACCACAGCAACATC
ATGGAAGACCTGCCGCTCAGTGAAACCAGCGATGGCGCTCTCCTGGGCCT
GCCCGAAAGCCAAACGGAGCTTGATAATCTTACAGAATACAACACGGCCC
ACAATCGGCGCATCTCAATGCTGGGCATCGATGATGATACCAATATGCGA
AAGCAAAACGCCTTGAAACAGGGACGGCGCACTCGAAATGTCACATTTAA
CGATGAGGAGATTGTCATCAATCCTGAGGATGTGGATCCTAATGTGGGAC
GCTTCAGGAACTTGGTACAAACCACTGTGGTGCCCGCCAAGAGGGCACGC
TGCGACGTCAACCATATGGGCATCCATTCGGGCAACAGCAGTTTGTCCAG
TGCCAATGCCGCACATGTACACCAAATGTTCCAGCAGAGCCTAGTTGACA
TGAAGCAGCAGCATAGGGAAATGCCTCCGCCCAATGCGGTGCTCCACTCG
CCTACTAATTCCCTATATCAAGGTCTACCGGCCGAAATGCATGGCAAGGG
TGACCT
BS09323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8980-PA | 1152 | NiPp1-RA | 1..890 | 17..906 | 4250 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NiPp1-RA | 1349 | CG8980-RA | 92..981 | 17..906 | 4330 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17003991..17004421 | 906..476 | 2095 | 99.1 | Minus |
2R | 25286936 | 2R | 17004753..17004968 | 260..45 | 1065 | 99.5 | Minus |
2R | 25286936 | 2R | 17004483..17004697 | 475..261 | 1045 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:06:49 has no hits.
BS09323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:01 Download gff for
BS09323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:24 Download gff for
BS09323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8980-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:06:06 Download gff for
BS09323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-RA | 89..981 | 10..906 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:14 Download gff for
BS09323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-RA | 89..981 | 10..906 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:14 Download gff for
BS09323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17004753..17004967 | 46..260 | 99 | <- | Minus |
2R | 17003991..17004421 | 476..906 | 99 | <- | Minus |
2R | 17004483..17004697 | 261..475 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:06:06 Download gff for
BS09323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12891496..12891926 | 476..906 | 99 | <- | Minus |
arm_2R | 12891988..12892202 | 261..475 | 99 | <- | Minus |
arm_2R | 12892258..12892472 | 46..260 | 99 | <- | Minus |
BS09323.complete Sequence
1184 bp assembled on 2008-08-15
GenBank Submission: FJ636394
> BS09323.complete
GAAGTTATCAGTCGACATGGCTAACAGCTACGACATTCCCAGTTGGGCTG
GAAAACCGCCCACTGGCTTACATCTGGATGTGCTAAAGGACGACAAACTA
GTACAAAAACTGATGGTGGATGAAAAAAGATGCTATCTATTTGGTCGCAA
CAGTCAAATGAACGACTTCTGCATAGACCATGCCTCTTGTTCGCGGGTCC
ACTCGGCTTTTGTCTACCACAAGCACCTCAACATAGCCTACCTCGTGGAT
CTGGGGTCCACTCATGGCACCTTTATTGGAACACTCAGATTGGAAGCGCA
CAAGCCCACACAGCTGCAGATTAATAGCACCTTCCACTTTGGGGCTTCTA
CCCGGAACTACATACTCAGGGAACGACCCTCTGGCCACCACAGCAACATC
ATGGAAGACCTGCCGCTCAGTGAAACCAGCGATGGCGCTCTCCTGGGCCT
GCCCGAAAGCCAAACGGAGCTTGATAATCTTACAGAATACAACACGGCCC
ACAATCGGCGCATCTCAATGCTGGGCATCGATGATGATACCAATATGCGA
AAGCAAAACGCCTTGAAACAGGGACGGCGCACTCGAAATGTCACATTTAA
CGATGAGGAGATTGTCATCAATCCTGAGGATGTGGATCCTAATGTGGGAC
GCTTCAGGAACTTGGTACAAACCACTGTGGTGCCCGCCAAGAGGGCACGC
TGCGACGTCAACCATATGGGCATCCATTCGGGCAACAGCAGTTTGTCCAG
TGCCAATGCCGCACATGTACACCAAATGTTCCAGCAGAGCCTAGTTGACA
TGAAGCAGCAGCATAGGGAAATGCCTCCGCCCAATGCGGTGCTCCACTCG
CCTACTAATTCCCTATATCAAGGTCTACCGGCCGAAATGCATGGCAAGGG
TGACCTAGAGCCCATCTCCCCGCTGAGCATTGGTTCCAAGTTGGGCCTAT
TGCTCCCGAATCCTGCGCCTGAAGTGCTGCCAGTCTATGACGAAGCTGTG
GAGACCTCGACATTGGCTCAAAAGTTGGCCGTCGCTAATGCAAACGTTCG
TCGCTTTGGTGAGGATCCGCATGACTCGAGTGGCGAAGGCGATTCGCTGT
GCCCACAGAAAAAGAAATACGCCAAGGAAGCATGGCCAGGTCGCAAGCCC
ATGTTGGGGCAGCTGTAAAAGCTTTCTAGACCAT
BS09323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:24:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NiPp1-RA | 1152 | CG8980-PA | 1..1152 | 17..1168 | 5640 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NiPp1-RA | 1349 | CG8980-RA | 92..1243 | 17..1168 | 5640 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17003851..17004421 | 1046..476 | 2795 | 99.3 | Minus |
2R | 25286936 | 2R | 17004753..17004968 | 260..45 | 1065 | 99.5 | Minus |
2R | 25286936 | 2R | 17004483..17004697 | 475..261 | 1045 | 99.1 | Minus |
2R | 25286936 | 2R | 17003669..17003791 | 1168..1046 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:24:32 has no hits.
BS09323.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:21 Download gff for
BS09323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-RA | 39..1197 | 10..1172 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:17 Download gff for
BS09323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-RA | 92..1241 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:34 Download gff for
BS09323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-RA | 42..1191 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:00 Download gff for
BS09323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NiPp1-RA | 92..1241 | 17..1166 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:00 Download gff for
BS09323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17003671..17003790 | 1047..1166 | 100 | <- | Minus |
2R | 17003851..17004421 | 476..1046 | 99 | <- | Minus |
2R | 17004483..17004697 | 261..475 | 99 | <- | Minus |
2R | 17004753..17004967 | 46..260 | 99 | <- | Minus |
2R | 17005030..17005058 | 17..45 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:17 Download gff for
BS09323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12891176..12891295 | 1047..1166 | 100 | <- | Minus |
arm_2R | 12891356..12891926 | 476..1046 | 99 | <- | Minus |
arm_2R | 12891988..12892202 | 261..475 | 99 | <- | Minus |
arm_2R | 12892258..12892472 | 46..260 | 99 | <- | Minus |
arm_2R | 12892535..12892563 | 17..45 | 96 | | Minus |
BS09323.pep Sequence
Translation from 16 to 1167
> BS09323.pep
MANSYDIPSWAGKPPTGLHLDVLKDDKLVQKLMVDEKRCYLFGRNSQMND
FCIDHASCSRVHSAFVYHKHLNIAYLVDLGSTHGTFIGTLRLEAHKPTQL
QINSTFHFGASTRNYILRERPSGHHSNIMEDLPLSETSDGALLGLPESQT
ELDNLTEYNTAHNRRISMLGIDDDTNMRKQNALKQGRRTRNVTFNDEEIV
INPEDVDPNVGRFRNLVQTTVVPAKRARCDVNHMGIHSGNSSLSSANAAH
VHQMFQQSLVDMKQQHREMPPPNAVLHSPTNSLYQGLPAEMHGKGDLEPI
SPLSIGSKLGLLLPNPAPEVLPVYDEAVETSTLAQKLAVANANVRRFGED
PHDSSGEGDSLCPQKKKYAKEAWPGRKPMLGQL*
BS09323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NiPp1-PA | 383 | CG8980-PA | 1..383 | 1..383 | 2025 | 100 | Plus |
CG17168-PA | 421 | CG17168-PA | 268..399 | 5..131 | 168 | 31.2 | Plus |