Clone Sequence Records
BS09325.3prime Sequence
935 bp (813 high quality bases) assembled on 2006-01-29
> BS09325.3prime
ATGGTCTAGAAAGCTTTTATAAATAAAGACCCTCGGGCGTGCCCTCCTTC
TTCCGGTACAAGACGCTCTCCTTTGACTTCTTGAAGTCCTCGTTGGTCAC
CTTCATGCGGCGTTCCCGCAGCGCCATCAAGCCAGCCTCTGTACAGATGG
CCTTGATGTCGGCGCCGGATAGATCGTCCTTTGCCATGATCAGTTCGCTA
AGGTTCACGTCCTCGGCCAGCGTCATGCGAGATGTGTGGATGGTAAAGAT
GCGGCGCTTGGTCTTCTCATCGGGCAGCGGGAACTCGATCTTGCGGTCAA
TACGACCGGGTCGAATGAGCGCCGGGTCAAGGGTCTCGATACGATTGGTG
GCCATGATCACCTTGACATCGCCGCGCGAATCGAAACCATCCAACTGATT
CAGTAACTCCAACATAGTACGCTGAATCTCCCGCTCGCCACCAGAATTTG
AATCGTAGCGCTTTGTGCCCACTGCATCGATTTCGTCGATGAACACAATG
GATGGAGCGTGCTCCTCAGCCACACGGAAGAGCTCACGAACTAGCTTGGG
TCCGTCGCCCAGGTACTTCTGGATCAGCTCTGAGCCTACAACGCGCAGGA
AAGTGGCCGAGGTCTGGTTGGCCACTGCCTTGGCTAGCAGGGTCTTGCCC
GTGCCAGGAGGCCCATATAGGATGACGCCCTTGGGTGGCTTGATTCCCAT
TTCCTCGTAGTACTCGGGATGGGTCAGTGGCAGCTCGACAGACTCCTTGA
TCTCCTGGATCTGAGTGTCTAAGCCACCGATATCTGCGTAAGTCTCCTGC
GGAGCCTTTTCCAGTTTCATCACCGTGACCATTGGATCGGTGTCGTCGCT
GAGAACTCCGACAACAGCGTGTACTTTGTGGGTGAGCAGCACGGAGCAGC
CTGGGTCCAGCTGATCCTTTGTCACGAAGGAATAG
BS09325.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5289-PA | 1320 | Pros26.4-RA | 418..1320 | 919..17 | 4365 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt2-RB | 1625 | CG5289-RB | 638..1552 | 931..17 | 4440 | 99.1 | Minus |
Rpt2-RA | 1501 | CG5289-RA | 514..1428 | 931..17 | 4440 | 99.1 | Minus |
Rpt6-RA | 1404 | CG1489-RA | 673..1078 | 682..277 | 290 | 73 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23929946..23930860 | 17..931 | 4440 | 99 | Plus |
2R | 25286936 | 2R | 7652809..7652952 | 281..424 | 240 | 77.8 | Plus |
3R | 32079331 | 3R | 30582535..30582622 | 277..364 | 185 | 80.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:42:04 has no hits.
BS09325.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:04 Download gff for
BS09325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5289-PA | 403..1320 | 17..935 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:28 Download gff for
BS09325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5289-PA | 403..1320 | 17..935 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:57 Download gff for
BS09325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt2-RA | 511..1428 | 17..935 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:05 Download gff for
BS09325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt2-RA | 511..1428 | 17..935 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:05 Download gff for
BS09325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23929946..23930863 | 17..935 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:57 Download gff for
BS09325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19755668..19756585 | 17..935 | 98 | | Plus |
BS09325.5prime Sequence
974 bp (909 high quality bases) assembled on 2006-01-29
> BS09325.5prime
GAAGTTATCAGTCGACATGGGACAAAACCAATCGGCTCAAGGGGGAGCTG
GCGAAAAGAAAGATGACAAGGATAAAAAGAAGAAGTACGAGCCTCCAATC
CCAACGCGCGTTGGCAAGAAGAAGAGGCGCGCAAAGGGTCCAGATGCGGC
CATGAAGCTGCCCCAGGTCACGCCCCACACCCGCTGCCGCCTTAAGCTGC
TCAAGCTGGAGCGCATCAAGGATTACCTGATGATGGAGGACGAGTTCATC
CGCAACCAGGAGCGCCTGAAGCCCCAGGACGAGAAGAACGAGGAGGAGCG
CTCCAAGGTTGACGATCTGCGCGGCACCCCCATGTCCGTGGGCAACCTGG
AGGAGATCATCGACGACAACCACGCCATCGTGTCCACATCGGTGGGCTCC
GAACATTATGTTAGCATCCTATCCTTCGTGGACAAGGATCAGCTGGAACC
AGGCTGCTCCGTGCTGCTCAACCACAAAGTACACGCTGTTGTCGGAGTTC
TCAGCGACGACACCGATCCAATGGTCACGGTGATGAAACTGGAAAAGGCT
CCGCAGGAGACTTACGCAGATATCGGTGGCTTAGACACTCAGATCCAGGA
GATCAAGGAGTCTGTCGAGCTGCCACTGACCCATCCCGAGTACTACGAGG
AAATGGGAATCAAGCCACCCAAGGGCGTCATCCTATATGGGCCTCCTGGC
ACGGGCAAGACCCTGCTAGCCAAGGCAGTGGCCAACCAGACCTCGGCCAC
TTTCCTGCGCGTTGTAGGCTCAGAGCTGATCCAGAAGTACCTGGGCGACG
GACCCAAGCTAGTTCGTGAGCTCTTCCGTGTGGCTGAGGAGCACGCTCCA
TCCATTGTGTTCATCGACGAAATCGATGCAGTGGGCACAAAGCGCTACGA
TTCAAATTCTGGGTGGCGAGCGGGAGATTCAGCGTACTATGTTGGAGTTA
CTGAATCAGTTGGATGGTTTCGAT
BS09325.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5289-PA | 1320 | Pros26.4-RA | 1..896 | 17..912 | 4280 | 99.1 | Plus |
CG5289-PA | 1320 | Pros26.4-RA | 895..957 | 912..974 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt2-RB | 1625 | CG5289-RB | 233..1189 | 17..974 | 4645 | 99.1 | Plus |
Rpt2-RA | 1501 | CG5289-RA | 109..1065 | 17..974 | 4645 | 99.1 | Plus |
Rpt3R-RD | 1414 | CG9475-RD | 499..817 | 578..896 | 200 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23930309..23931263 | 974..19 | 4610 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:36:54 has no hits.
BS09325.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:05 Download gff for
BS09325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5289-PA | 1..957 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:29 Download gff for
BS09325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5289-PA | 1..957 | 17..974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:48 Download gff for
BS09325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt2-RA | 102..1065 | 10..974 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:01 Download gff for
BS09325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt2-RA | 102..1065 | 10..974 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:01 Download gff for
BS09325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23930309..23931273 | 6..974 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:48 Download gff for
BS09325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19756031..19756995 | 6..974 | 98 | | Minus |
BS09325.complete Sequence
1352 bp (1352 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636396
> BS09325.complete
GAAGTTATCAGTCGACATGGGACAAAACCAATCGGCTCAAGGGGGAGCTG
GCGAAAAGAAAGATGACAAGGATAAAAAGAAGAAGTACGAGCCTCCAATC
CCAACGCGCGTTGGCAAGAAGAAGAGGCGCGCAAAGGGTCCAGATGCGGC
CATGAAGCTGCCCCAGGTCACGCCCCACACCCGCTGCCGCCTTAAGCTGC
TCAAGCTGGAGCGCATCAAGGATTACCTGATGATGGAGGACGAGTTCATC
CGCAACCAGGAGCGCCTGAAGCCCCAGGACGAGAAGAACGAGGAGGAGCG
CTCCAAGGTTGACGATCTGCGCGGCACCCCCATGTCCGTGGGCAACCTGG
AGGAGATCATCGACGACAACCACGCCATCGTGTCCACATCGGTGGGCTCC
GAACATTATGTTAGCATCCTATCCTTCGTGGACAAGGATCAGCTGGAACC
AGGCTGCTCCGTGCTGCTCAACCACAAAGTACACGCTGTTGTCGGAGTTC
TCAGCGACGACACCGATCCAATGGTCACGGTGATGAAACTGGAAAAGGCT
CCGCAGGAGACTTACGCAGATATCGGTGGCTTAGACACTCAGATCCAGGA
GATCAAGGAGTCTGTCGAGCTGCCACTGACCCATCCCGAGTACTACGAGG
AAATGGGAATCAAGCCACCCAAGGGCGTCATCCTATATGGGCCTCCTGGC
ACGGGCAAGACCCTGCTAGCCAAGGCAGTGGCCAACCAGACCTCGGCCAC
TTTCCTGCGCGTTGTAGGCTCAGAGCTGATCCAGAAGTACCTGGGCGACG
GACCCAAGCTAGTTCGTGAGCTCTTCCGTGTGGCTGAGGAGCACGCTCCA
TCCATTGTGTTCATCGACGAAATCGATGCAGTGGGCACAAAGCGCTACGA
TTCAAATTCTGGTGGCGAGCGGGAGATTCAGCGTACTATGTTGGAGTTAC
TGAATCAGTTGGATGGTTTCGATTCGCGCGGCGATGTCAAGGTGATCATG
GCCACCAATCGTATCGAGACCCTTGACCCGGCGCTCATTCGACCCGGTCG
TATTGACCGCAAGATCGAGTTCCCGCTGCCCGATGAGAAGACCAAGCGCC
GCATCTTTACCATCCACACATCTCGCATGACGCTGGCCGAGGACGTGAAC
CTTAGCGAACTGATCATGGCAAAGGACGATCTATCCGGCGCCGACATCAA
GGCCATCTGTACAGAGGCTGGCTTGATGGCGCTGCGGGAACGCCGCATGA
AGGTGACCAACGAGGACTTCAAGAAGTCAAAGGAGAGCGTCTTGTACCGG
AAGAAGGAGGGCACGCCCGAGGGTCTTTATTTATAAAAGCTTTCTAGACC
AT
BS09325.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt2-RB | 1320 | CG5289-PB | 1..1320 | 17..1336 | 6480 | 99.4 | Plus |
Rpt2-RA | 1320 | CG5289-PA | 1..1320 | 17..1336 | 6480 | 99.4 | Plus |
Rpt6-RA | 1218 | CG1489-PA | 547..952 | 671..1076 | 290 | 71.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt2-RB | 1625 | CG5289-RB | 233..1552 | 17..1336 | 6480 | 99.4 | Plus |
Rpt2-RA | 1501 | CG5289-RA | 109..1428 | 17..1336 | 6480 | 99.4 | Plus |
Rpt6-RA | 1404 | CG1489-RA | 673..1078 | 671..1076 | 290 | 71.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23929946..23931263 | 1336..19 | 6470 | 99.4 | Minus |
2R | 25286936 | 2R | 7652809..7652952 | 1072..929 | 240 | 77.8 | Minus |
3R | 32079331 | 3R | 30582535..30582622 | 1076..989 | 185 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:18:50 has no hits.
BS09325.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:29 Download gff for
BS09325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros26.4-RA | 1..1320 | 17..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:54 Download gff for
BS09325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros26.4-RA | 193..1519 | 10..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:00 Download gff for
BS09325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt2-RA | 109..1426 | 17..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:29 Download gff for
BS09325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros26.4-RA | 193..1519 | 10..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:20 Download gff for
BS09325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt2-RA | 109..1426 | 17..1334 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:20 Download gff for
BS09325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23929948..23931264 | 17..1334 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:00 Download gff for
BS09325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19755670..19756986 | 17..1334 | 99 | | Minus |
BS09325.pep Sequence
Translation from 16 to 1335
> BS09325.pep
MGQNQSAQGGAGEKKDDKDKKKKYEPPIPTRVGKKKRRAKGPDAAMKLPQ
VTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDD
LRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVL
LNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESV
ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV
GSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG
EREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI
EFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTE
AGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL*
BS09325.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt2-PB | 439 | CG5289-PB | 1..439 | 1..439 | 2242 | 100 | Plus |
Rpt2-PA | 439 | CG5289-PA | 1..439 | 1..439 | 2242 | 100 | Plus |
Rpt3-PB | 413 | CG16916-PB | 41..407 | 63..431 | 1013 | 50.4 | Plus |
Rpt3-PA | 413 | CG16916-PA | 41..407 | 63..431 | 1013 | 50.4 | Plus |
Rpt3R-PD | 405 | CG9475-PD | 33..402 | 63..435 | 988 | 50.1 | Plus |