Clone BS09325 Report

Search the DGRC for BS09325

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptRpt2-RA
Protein status:BS09325.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09325.3prime Sequence

935 bp (813 high quality bases) assembled on 2006-01-29

> BS09325.3prime
ATGGTCTAGAAAGCTTTTATAAATAAAGACCCTCGGGCGTGCCCTCCTTC
TTCCGGTACAAGACGCTCTCCTTTGACTTCTTGAAGTCCTCGTTGGTCAC
CTTCATGCGGCGTTCCCGCAGCGCCATCAAGCCAGCCTCTGTACAGATGG
CCTTGATGTCGGCGCCGGATAGATCGTCCTTTGCCATGATCAGTTCGCTA
AGGTTCACGTCCTCGGCCAGCGTCATGCGAGATGTGTGGATGGTAAAGAT
GCGGCGCTTGGTCTTCTCATCGGGCAGCGGGAACTCGATCTTGCGGTCAA
TACGACCGGGTCGAATGAGCGCCGGGTCAAGGGTCTCGATACGATTGGTG
GCCATGATCACCTTGACATCGCCGCGCGAATCGAAACCATCCAACTGATT
CAGTAACTCCAACATAGTACGCTGAATCTCCCGCTCGCCACCAGAATTTG
AATCGTAGCGCTTTGTGCCCACTGCATCGATTTCGTCGATGAACACAATG
GATGGAGCGTGCTCCTCAGCCACACGGAAGAGCTCACGAACTAGCTTGGG
TCCGTCGCCCAGGTACTTCTGGATCAGCTCTGAGCCTACAACGCGCAGGA
AAGTGGCCGAGGTCTGGTTGGCCACTGCCTTGGCTAGCAGGGTCTTGCCC
GTGCCAGGAGGCCCATATAGGATGACGCCCTTGGGTGGCTTGATTCCCAT
TTCCTCGTAGTACTCGGGATGGGTCAGTGGCAGCTCGACAGACTCCTTGA
TCTCCTGGATCTGAGTGTCTAAGCCACCGATATCTGCGTAAGTCTCCTGC
GGAGCCTTTTCCAGTTTCATCACCGTGACCATTGGATCGGTGTCGTCGCT
GAGAACTCCGACAACAGCGTGTACTTTGTGGGTGAGCAGCACGGAGCAGC
CTGGGTCCAGCTGATCCTTTGTCACGAAGGAATAG

BS09325.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5289-PA 1320 Pros26.4-RA 418..1320 919..17 4365 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt2-RB 1625 CG5289-RB 638..1552 931..17 4440 99.1 Minus
Rpt2-RA 1501 CG5289-RA 514..1428 931..17 4440 99.1 Minus
Rpt6-RA 1404 CG1489-RA 673..1078 682..277 290 73 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23929946..23930860 17..931 4440 99 Plus
2R 25286936 2R 7652809..7652952 281..424 240 77.8 Plus
3R 32079331 3R 30582535..30582622 277..364 185 80.7 Plus
Blast to na_te.dros performed on 2015-02-11 10:42:04 has no hits.

BS09325.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:04 Download gff for BS09325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5289-PA 403..1320 17..935 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:28 Download gff for BS09325.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5289-PA 403..1320 17..935 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:07:57 Download gff for BS09325.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt2-RA 511..1428 17..935 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:05 Download gff for BS09325.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt2-RA 511..1428 17..935 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:05 Download gff for BS09325.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23929946..23930863 17..935 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:07:57 Download gff for BS09325.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19755668..19756585 17..935 98   Plus

BS09325.5prime Sequence

974 bp (909 high quality bases) assembled on 2006-01-29

> BS09325.5prime
GAAGTTATCAGTCGACATGGGACAAAACCAATCGGCTCAAGGGGGAGCTG
GCGAAAAGAAAGATGACAAGGATAAAAAGAAGAAGTACGAGCCTCCAATC
CCAACGCGCGTTGGCAAGAAGAAGAGGCGCGCAAAGGGTCCAGATGCGGC
CATGAAGCTGCCCCAGGTCACGCCCCACACCCGCTGCCGCCTTAAGCTGC
TCAAGCTGGAGCGCATCAAGGATTACCTGATGATGGAGGACGAGTTCATC
CGCAACCAGGAGCGCCTGAAGCCCCAGGACGAGAAGAACGAGGAGGAGCG
CTCCAAGGTTGACGATCTGCGCGGCACCCCCATGTCCGTGGGCAACCTGG
AGGAGATCATCGACGACAACCACGCCATCGTGTCCACATCGGTGGGCTCC
GAACATTATGTTAGCATCCTATCCTTCGTGGACAAGGATCAGCTGGAACC
AGGCTGCTCCGTGCTGCTCAACCACAAAGTACACGCTGTTGTCGGAGTTC
TCAGCGACGACACCGATCCAATGGTCACGGTGATGAAACTGGAAAAGGCT
CCGCAGGAGACTTACGCAGATATCGGTGGCTTAGACACTCAGATCCAGGA
GATCAAGGAGTCTGTCGAGCTGCCACTGACCCATCCCGAGTACTACGAGG
AAATGGGAATCAAGCCACCCAAGGGCGTCATCCTATATGGGCCTCCTGGC
ACGGGCAAGACCCTGCTAGCCAAGGCAGTGGCCAACCAGACCTCGGCCAC
TTTCCTGCGCGTTGTAGGCTCAGAGCTGATCCAGAAGTACCTGGGCGACG
GACCCAAGCTAGTTCGTGAGCTCTTCCGTGTGGCTGAGGAGCACGCTCCA
TCCATTGTGTTCATCGACGAAATCGATGCAGTGGGCACAAAGCGCTACGA
TTCAAATTCTGGGTGGCGAGCGGGAGATTCAGCGTACTATGTTGGAGTTA
CTGAATCAGTTGGATGGTTTCGAT

BS09325.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5289-PA 1320 Pros26.4-RA 1..896 17..912 4280 99.1 Plus
CG5289-PA 1320 Pros26.4-RA 895..957 912..974 315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt2-RB 1625 CG5289-RB 233..1189 17..974 4645 99.1 Plus
Rpt2-RA 1501 CG5289-RA 109..1065 17..974 4645 99.1 Plus
Rpt3R-RD 1414 CG9475-RD 499..817 578..896 200 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23930309..23931263 974..19 4610 99.1 Minus
Blast to na_te.dros performed on 2015-02-12 04:36:54 has no hits.

BS09325.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:05 Download gff for BS09325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5289-PA 1..957 17..974 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:29 Download gff for BS09325.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5289-PA 1..957 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:48 Download gff for BS09325.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt2-RA 102..1065 10..974 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:01 Download gff for BS09325.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt2-RA 102..1065 10..974 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:01 Download gff for BS09325.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23930309..23931273 6..974 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:48 Download gff for BS09325.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19756031..19756995 6..974 98   Minus

BS09325.complete Sequence

1352 bp (1352 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636396

> BS09325.complete
GAAGTTATCAGTCGACATGGGACAAAACCAATCGGCTCAAGGGGGAGCTG
GCGAAAAGAAAGATGACAAGGATAAAAAGAAGAAGTACGAGCCTCCAATC
CCAACGCGCGTTGGCAAGAAGAAGAGGCGCGCAAAGGGTCCAGATGCGGC
CATGAAGCTGCCCCAGGTCACGCCCCACACCCGCTGCCGCCTTAAGCTGC
TCAAGCTGGAGCGCATCAAGGATTACCTGATGATGGAGGACGAGTTCATC
CGCAACCAGGAGCGCCTGAAGCCCCAGGACGAGAAGAACGAGGAGGAGCG
CTCCAAGGTTGACGATCTGCGCGGCACCCCCATGTCCGTGGGCAACCTGG
AGGAGATCATCGACGACAACCACGCCATCGTGTCCACATCGGTGGGCTCC
GAACATTATGTTAGCATCCTATCCTTCGTGGACAAGGATCAGCTGGAACC
AGGCTGCTCCGTGCTGCTCAACCACAAAGTACACGCTGTTGTCGGAGTTC
TCAGCGACGACACCGATCCAATGGTCACGGTGATGAAACTGGAAAAGGCT
CCGCAGGAGACTTACGCAGATATCGGTGGCTTAGACACTCAGATCCAGGA
GATCAAGGAGTCTGTCGAGCTGCCACTGACCCATCCCGAGTACTACGAGG
AAATGGGAATCAAGCCACCCAAGGGCGTCATCCTATATGGGCCTCCTGGC
ACGGGCAAGACCCTGCTAGCCAAGGCAGTGGCCAACCAGACCTCGGCCAC
TTTCCTGCGCGTTGTAGGCTCAGAGCTGATCCAGAAGTACCTGGGCGACG
GACCCAAGCTAGTTCGTGAGCTCTTCCGTGTGGCTGAGGAGCACGCTCCA
TCCATTGTGTTCATCGACGAAATCGATGCAGTGGGCACAAAGCGCTACGA
TTCAAATTCTGGTGGCGAGCGGGAGATTCAGCGTACTATGTTGGAGTTAC
TGAATCAGTTGGATGGTTTCGATTCGCGCGGCGATGTCAAGGTGATCATG
GCCACCAATCGTATCGAGACCCTTGACCCGGCGCTCATTCGACCCGGTCG
TATTGACCGCAAGATCGAGTTCCCGCTGCCCGATGAGAAGACCAAGCGCC
GCATCTTTACCATCCACACATCTCGCATGACGCTGGCCGAGGACGTGAAC
CTTAGCGAACTGATCATGGCAAAGGACGATCTATCCGGCGCCGACATCAA
GGCCATCTGTACAGAGGCTGGCTTGATGGCGCTGCGGGAACGCCGCATGA
AGGTGACCAACGAGGACTTCAAGAAGTCAAAGGAGAGCGTCTTGTACCGG
AAGAAGGAGGGCACGCCCGAGGGTCTTTATTTATAAAAGCTTTCTAGACC
AT

BS09325.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt2-RB 1320 CG5289-PB 1..1320 17..1336 6480 99.4 Plus
Rpt2-RA 1320 CG5289-PA 1..1320 17..1336 6480 99.4 Plus
Rpt6-RA 1218 CG1489-PA 547..952 671..1076 290 71.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt2-RB 1625 CG5289-RB 233..1552 17..1336 6480 99.4 Plus
Rpt2-RA 1501 CG5289-RA 109..1428 17..1336 6480 99.4 Plus
Rpt6-RA 1404 CG1489-RA 673..1078 671..1076 290 71.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23929946..23931263 1336..19 6470 99.4 Minus
2R 25286936 2R 7652809..7652952 1072..929 240 77.8 Minus
3R 32079331 3R 30582535..30582622 1076..989 185 80.7 Minus
Blast to na_te.dros performed on 2014-11-26 22:18:50 has no hits.

BS09325.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:29 Download gff for BS09325.complete
Subject Subject Range Query Range Percent Splice Strand
Pros26.4-RA 1..1320 17..1336 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:54 Download gff for BS09325.complete
Subject Subject Range Query Range Percent Splice Strand
Pros26.4-RA 193..1519 10..1336 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:00 Download gff for BS09325.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt2-RA 109..1426 17..1334 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:29 Download gff for BS09325.complete
Subject Subject Range Query Range Percent Splice Strand
Pros26.4-RA 193..1519 10..1336 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:20 Download gff for BS09325.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt2-RA 109..1426 17..1334 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:20 Download gff for BS09325.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23929948..23931264 17..1334 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:00 Download gff for BS09325.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19755670..19756986 17..1334 99   Minus

BS09325.pep Sequence

Translation from 16 to 1335

> BS09325.pep
MGQNQSAQGGAGEKKDDKDKKKKYEPPIPTRVGKKKRRAKGPDAAMKLPQ
VTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDD
LRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVL
LNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESV
ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV
GSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG
EREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI
EFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTE
AGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL*

BS09325.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt2-PB 439 CG5289-PB 1..439 1..439 2242 100 Plus
Rpt2-PA 439 CG5289-PA 1..439 1..439 2242 100 Plus
Rpt3-PB 413 CG16916-PB 41..407 63..431 1013 50.4 Plus
Rpt3-PA 413 CG16916-PA 41..407 63..431 1013 50.4 Plus
Rpt3R-PD 405 CG9475-PD 33..402 63..435 988 50.1 Plus