Clone Sequence Records
BS09334.3prime Sequence
669 bp (668 high quality bases) assembled on 2006-01-29
> BS09334.3prime
ATGGTCTAGAAAGCTTCTAGTTCACATACGCCTCCATCAGCTTCAGCAGC
AAATGGTGATACGCCTCGTACTCATCCTTTCCGAACTCATTCGGATCGTG
CCGAGCATGTTCGTACATATCGCAATATTGGTGAATCATTCGCTGCCCTG
CTCCGTTCAGCGTCACCGATAAAGTGGTCAGCAGAAAGGCCCTCAAACTT
TCAGGAGCATGTCGGGAGCTACCGTCCGCCCTCGCTATTTCGGATTCTAG
CAGTTTCACGTCATCAACCGCCTTCATGCGGTAGTAGTAGGGTGGCAATG
GTGCCTCCTGCTCCGGCTGAACGATGTACTTGTCGCCATCGTCCCACAGC
AGTTTCGGCTCCTGCGTGATTTTCTGGATGCAATCTAGGCGCCGCTCAAT
CTCTCTCCTTAGTGCCTTCTTGGCATCATTGCCTACCGGAACGTGGGGCC
CCCGACGTCCTCGCAGCTGAAAGCGCATAATCTGCCGCTTGGCAAAGATG
AACAGCATCAGACAAGTAAGTACTCCTCCGCTGATTATGATGATTATCAT
CACGCCCGAAAGCTGTTCCATGTTGCCGCCCGCCTTGCTGGCCTTCTCCT
GAAGACTCGGTGCGGCGTAGTCGCCTACCTTATGCAGGCGCAGATGCCCA
TCCATGTCGACTGATAACT
BS09334.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-PA | 639 | CG6665-RA | 1..639 | 655..17 | 3070 | 99.2 | Minus |
| CG6665-PC | 1050 | CG6665-RC | 1..626 | 655..30 | 3005 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-RC | 1395 | CG6665-RC | 98..728 | 660..30 | 3065 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16957562..16958206 | 660..16 | 3135 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:37:17 has no hits.
BS09334.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:21 Download gff for
BS09334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-PC | 1..626 | 30..655 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:51 Download gff for
BS09334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-PA | 1..639 | 17..655 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:46 Download gff for
BS09334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 93..728 | 30..669 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:40 Download gff for
BS09334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 93..728 | 30..669 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:40 Download gff for
BS09334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16957557..16958206 | 16..669 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:46 Download gff for
BS09334.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12845062..12845711 | 16..669 | 98 | | Minus |
BS09334.5prime Sequence
669 bp (668 high quality bases) assembled on 2006-01-29
> BS09334.5prime
GAAGTTATCAGTCGACATGGATGGGCATCTGCGCCTGCATAAGGTAGGCG
ACTACGCCGCACCGAGTCTTCAGGAGAAGGCCAGCAAGGCGGGCGGCAAC
ATGGAACAGCTTTCGGGCGTGATGATAATCATCATAATCAGCGGAGGAGT
ACTTACTTGTCTGATGCTGTTCATCTTTGCCAAGCGGCAGATTATGCGCT
TTCAGCTGCGAGGACGTCGGGGGCCCCACGTTCCGGTAGGCAATGATGCC
AAGAAGGCACTAAGGAGAGAGATTGAGCGGCGCCTAGATTGCATCCAGAA
AATCACGCAGGAGCCGAAACTGCTGTGGGACGATGGCGACAAGTACATCG
TTCAGCCGGAGCAGGAGGCACCATTGCCACCCTACTACTACCGCATGAAG
GCGGTTGATGACGTGAAACTGCTAGAATCCGAAATAGCGAGGGCGGACGG
TAGCTCCCGACATGCTCCTGAAAGTTTGAGGGCCTTTCTGCTGACCACTT
TATCGGTGACGCTGAACGGAGCAGGGCAGCGAATGATTCACCAATATTGC
GATATGTACGAACATGCTCGGCACGATCCGAATGAGTTCGGAAAGGATGA
GTACGAGGCGTATCACCATTTGCTGCTGAAGCTGATGGAGGCGTATGTGA
ACTAGAAGCTTTCTAGACC
BS09334.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-PA | 639 | CG6665-RA | 1..639 | 17..655 | 3070 | 99.2 | Plus |
| CG6665-PC | 1050 | CG6665-RC | 1..626 | 17..642 | 3005 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-RC | 1395 | CG6665-RC | 98..728 | 12..642 | 3065 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16957562..16958206 | 12..656 | 3135 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:55:01 has no hits.
BS09334.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:22 Download gff for
BS09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-PC | 1..626 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:52 Download gff for
BS09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-PA | 1..639 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:43:23 Download gff for
BS09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 92..728 | 2..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:43 Download gff for
BS09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 92..728 | 2..642 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:43 Download gff for
BS09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16957556..16958206 | 2..656 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:43:23 Download gff for
BS09334.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12845061..12845711 | 2..656 | 98 | | Plus |
BS09334.complete Sequence
671 bp (671 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636397
> BS09334.complete
GAAGTTATCAGTCGACATGGATGGGCATCTGCGCCTGCATAAGGTAGGCG
ACTACGCCGCACCGAGTCTTCAGGAGAAGGCCAGCAAGGCGGGCGGCAAC
ATGGAACAGCTTTCGGGCGTGATGATAATCATCATAATCAGCGGAGGAGT
ACTTACTTGTCTGATGCTGTTCATCTTTGCCAAGCGGCAGATTATGCGCT
TTCAGCTGCGAGGACGTCGGGGGCCCCACGTTCCGGTAGGCAATGATGCC
AAGAAGGCACTAAGGAGAGAGATTGAGCGGCGCCTAGATTGCATCCAGAA
AATCACGCAGGAGCCGAAACTGCTGTGGGACGATGGCGACAAGTACATCG
TTCAGCCGGAGCAGGAGGCACCATTGCCACCCTACTACTACCGCATGAAG
GCGGTTGATGACGTGAAACTGCTAGAATCCGAAATAGCGAGGGCGGACGG
TAGCTCCCGACATGCTCCTGAAAGTTTGAGGGCCTTTCTGCTGACCACTT
TATCGGTGACGCTGAACGGAGCAGGGCAGCGAATGATTCACCAATATTGC
GATATGTACGAACATGCTCGGCACGATCCGAATGAGTTCGGAAAGGATGA
GTACGAGGCGTATCACCATTTGCTGCTGAAGCTGATGGAGGCGTATGTGA
ACTAGAAGCTTTCTAGACCAT
BS09334.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-RC | 1050 | CG6665-PC | 1..626 | 17..642 | 3055 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-RC | 1395 | CG6665-RC | 98..728 | 12..642 | 3065 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16957562..16958206 | 12..656 | 3135 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:29:15 has no hits.
BS09334.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:58 Download gff for
BS09334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RA | 1..639 | 17..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:42 Download gff for
BS09334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RA | 55..707 | 2..660 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:42 Download gff for
BS09334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 103..728 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:58 Download gff for
BS09334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RA | 55..707 | 2..660 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:35 Download gff for
BS09334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6665-RC | 103..728 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:35 Download gff for
BS09334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16957567..16958205 | 17..655 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:42 Download gff for
BS09334.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12845072..12845710 | 17..655 | 99 | | Plus |
BS09334.pep Sequence
Translation from 16 to 654
> BS09334.pep
MDGHLRLHKVGDYAAPSLQEKASKAGGNMEQLSGVMIIIIISGGVLTCLM
LFIFAKRQIMRFQLRGRRGPHVPVGNDAKKALRREIERRLDCIQKITQEP
KLLWDDGDKYIVQPEQEAPLPPYYYRMKAVDDVKLLESEIARADGSSRHA
PESLRAFLLTTLSVTLNGAGQRMIHQYCDMYEHARHDPNEFGKDEYEAYH
HLLLKLMEAYVN*
BS09334.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6665-PC | 349 | CG6665-PC | 1..209 | 1..209 | 1093 | 100 | Plus |
