Clone BS09337 Report

Search the DGRC for BS09337

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG12004-RA
Protein status:BS09337.pep: full length peptide match
Sequenced Size:1244

Clone Sequence Records

BS09337.3prime Sequence

909 bp (831 high quality bases) assembled on 2006-01-29

> BS09337.3prime
ATGGTCTAGAAAGCTTTTAGAGCTTTTCGTATCGCTGAGCCGAGGTTACT
TCTGAGCTGTACTGCGTGTACTGCTGGTACTGCGGATGGAAGTTGTGTAT
AGCATCTGTCATAATATCCTTGGGATTCATTGTTTCCTTAAGACTGCTGG
AAATGGACTGCATGGTGACAGACCGTCCGTGGCCATCGCTGATGCAGCTG
CGTGCGTAGACCTGATAGGGGAATGCATAGCGCAGCGCGATGGCGGCGAA
CAGCATTTCGATGCAGATGAAGAAGTTCTGGTATCCGGCGGAGACGGTAC
CGGGTTCCACGGTAACAGTGCCTGCACTGTCTACAATGGGCGAGATAACA
TTGGCCTTCTCCAGGATGGCCAGACCCACGCCCTGCCAGAAGGACAAGAA
GATGACGGACTTAATGGTACAGAACTTTAGCACGGGCTCGAACGGAGTCA
GCAGATCACGCGTGGCGAAGTAGAACAGATAGAGGCCATACAACGCCAGC
GACACGGAGATGTTGTAGATAATCGTGATGTAAATGTAACCGCCATCAGC
ACTCCAATCGCCATCGTGGTAGTGGCCAAATGCCTGCAGAAAGATGATAA
TGAAGGCCACCAGCGGCTTGACCAGGCAGAACTGCAGAGTGGCCTGCTTG
CAGAAGCGCAGGAAGCCAATCGTGTAGGTCTTGCCCTTCAGACAGCAGGT
GCCATACAGGCACGATGTCTTGATGGGCTTGCCGCGAATCTCCGACATAA
TATTGCCCTCGCCACCCAGGTACTCATAGCACAGCGACAAGAAGTTGTAG
ATGACAAAGGCTTCGTAGCAGTCGCGCACCGTANAGAAGTAGATGTAAAC
GTTATCCGAGTTGAAGAAAAGCAGACTGATCCAGGAGTATGTGGCATAGA
TGGGCACAT

BS09337.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-PA 1212 CG12004-RA 321..1212 908..17 4416 99.7 Minus
CG12004-PB 1212 CG12004-RB 321..1212 908..17 4416 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-RB 2002 CG12004-RB 407..1299 908..16 4439 99.8 Minus
CG12004-RA 2278 CG12004-RA 683..1575 908..16 4439 99.8 Minus
CG12004-RD 2882 CG12004-RD 683..1539 908..52 4274 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1572962..1573310 558..210 1730 99.7 Minus
3L 28110227 3L 1572522..1572782 812..552 1305 100 Minus
3L 28110227 3L 1572360..1572457 908..811 479 99 Minus
3L 28110227 3L 1573678..1573764 138..52 435 100 Minus
3L 28110227 3L 1573544..1573621 213..136 390 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:43:43 has no hits.

BS09337.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:27 Download gff for BS09337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12004-PA 319..1212 17..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:59 Download gff for BS09337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12004-PB 319..1212 17..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:09 Download gff for BS09337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 681..1575 16..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:38 Download gff for BS09337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 681..1575 16..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:38 Download gff for BS09337.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1572524..1572782 552..810 100 -> Minus
3L 1572358..1572457 811..909 98 -> Minus
3L 1572969..1573308 212..551 100 -> Minus
3L 1573546..1573620 137..211 100 -> Minus
3L 1573680..1573764 52..136 100 -> Minus
3L 1573994..1574029 16..51 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:09 Download gff for BS09337.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1572358..1572457 811..909 98 -> Minus
arm_3L 1572524..1572782 552..810 100 -> Minus
arm_3L 1572969..1573308 212..551 100 -> Minus
arm_3L 1573546..1573620 137..211 100 -> Minus
arm_3L 1573680..1573764 52..136 100 -> Minus
arm_3L 1573994..1574029 16..51 97   Minus

BS09337.5prime Sequence

860 bp (857 high quality bases) assembled on 2006-01-29

> BS09337.5prime
GAAGTTATCAGTCGACATGAGCACAACCGCCGCCAGTCTCATCGAGGCGG
CTCTAAATGCCAGTAGTGGAAACGCCACGGCTACAACTGCGGGATCGCTT
GAGGCTACAGGGAAGCCCAACTACGTGGTGCAGGTAAAGAACACTCCGAT
GAGCACGCCGCTGGACCCGCTGCTCCACGTGGGCGATGGCATCTTCCTGC
AGACAAAGACCGCCCAGGTTCTAGCTGGGGTGTGCGTCTGGGCCGCCCTC
TTCATCACATGTCAACAGATCTACCAGCACCTGCGCTGGTACACGAATCC
ACAGGAGCAGCGCTGGATCGTGCGCATTTTGTTCATTGTGCCCATCTATG
CCACATACTCCTGGATCAGTCTGCTTTTCTTCAACTCGGATAACGTTTAC
ATCTACTTCTTTACGGTGCGCGACTGCTACGAAGCCTTTGTCATCTACAA
CTTCTTGTCGCTGTGCTATGAGTACCTGGGTGGCGAGGGCAATATTATGT
CGGAGATTCGCGGCAAGCCCATCAAGACATCGTGCCTGTATGGCACCTGC
TGTCTGAAGGGCAAGACCTACACGATTGGCTTCCTGCGCTTCTGCAAGCA
GGCCACTCTGCAGTTCTGCCTGGTCAAGCCGCTGGTGGCCTTCATTATCA
TCTTTCTGCAGGCATTTGGCCACTACCACGATGGCGATTGGAGTGCTGAT
GGCGGTTACATTTACATCACGATTATCTACAACATCTCCGTGTCGCTGGC
GTTGTATGGCCTCTATCTGTTCTACTTCGCCACGCGTGATCTGCTGACTC
CGTTCGAGCCCGTGCTAAAGTTCTGTACCATTAAGTCCGTCATCTTCTTG
TCCTTCTGGC

BS09337.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-PA 1212 CG12004-RA 1..844 17..860 4220 100 Plus
CG12004-PB 1212 CG12004-RB 1..844 17..860 4220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-RD 2882 CG12004-RD 362..1206 16..860 4225 100 Plus
CG12004-RC 2172 CG12004-RC 362..1206 16..860 4225 100 Plus
CG12004-RB 2002 CG12004-RB 86..930 16..860 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1572522..1572782 433..693 1305 100 Plus
3L 28110227 3L 1571986..1572238 16..268 1265 100 Plus
3L 28110227 3L 1572962..1573135 687..860 855 99.4 Plus
3L 28110227 3L 1572289..1572457 266..434 845 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:58:04 has no hits.

BS09337.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:28 Download gff for BS09337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12004-PA 1..844 17..860 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:00 Download gff for BS09337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12004-PB 1..844 17..860 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:25:42 Download gff for BS09337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 362..1206 16..860 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:05 Download gff for BS09337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12004-RB 86..930 16..860 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:05 Download gff for BS09337.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1572969..1573135 694..860 100   Plus
3L 1571986..1572238 16..268 100 -> Plus
3L 1572292..1572457 269..434 100 -> Plus
3L 1572524..1572782 435..693 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:25:42 Download gff for BS09337.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1571986..1572238 16..268 100 -> Plus
arm_3L 1572292..1572457 269..434 100 -> Plus
arm_3L 1572524..1572782 435..693 100 -> Plus
arm_3L 1572969..1573135 694..860 100   Plus

BS09337.complete Sequence

1244 bp assembled on 2008-08-15

GenBank Submission: FJ636398

> BS09337.complete
GAAGTTATCAGTCGACATGAGCACAACCGCCGCCAGTCTCATCGAGGCGG
CTCTAAATGCCAGTAGTGGAAACGCCACGGCTACAACTGCGGGATCGCTT
GAGGCTACAGGGAAGCCCAACTACGTGGTGCAGGTAAAGAACACTCCGAT
GAGCACGCCGCTGGACCCGCTGCTCCACGTGGGCGATGGCATCTTCCTGC
AGACAAAGACCGCCCAGGTTCTAGCTGGGGTGTGCGTCTGGGCCGCCCTC
TTCATCACATGTCAACAGATCTACCAGCACCTGCGCTGGTACACGAATCC
ACAGGAGCAGCGCTGGATCGTGCGCATTTTGTTCATTGTGCCCATCTATG
CCACATACTCCTGGATCAGTCTGCTTTTCTTCAACTCGGATAACGTTTAC
ATCTACTTCTTTACGGTGCGCGACTGCTACGAAGCCTTTGTCATCTACAA
CTTCTTGTCGCTGTGCTATGAGTACCTGGGTGGCGAGGGCAATATTATGT
CGGAGATTCGCGGCAAGCCCATCAAGACATCGTGCCTGTATGGCACCTGC
TGTCTGAAGGGCAAGACCTACACGATTGGCTTCCTGCGCTTCTGCAAGCA
GGCCACTCTGCAGTTCTGCCTGGTCAAGCCGCTGGTGGCCTTCATTATCA
TCTTTCTGCAGGCATTTGGCCACTACCACGATGGCGATTGGAGTGCTGAT
GGCGGTTACATTTACATCACGATTATCTACAACATCTCCGTGTCGCTGGC
GTTGTATGGCCTCTATCTGTTCTACTTCGCCACGCGTGATCTGCTGACTC
CGTTCGAGCCCGTGCTAAAGTTCTGTACCATTAAGTCCGTCATCTTCTTG
TCCTTCTGGCAGGGCGTGGGTCTGGCCATCCTGGAGAAGGCCAATGTTAT
CTCGCCCATTGTAGACAGTGCAGGCACTGTTACCGTGGAACCCGGTACCG
TCTCCGCCGGATACCAGAACTTCTTCATCTGCATCGAAATGCTGTTCGCC
GCCATCGCGCTGCGCTATGCATTCCCCTATCAGGTCTACGCACGCAGCTG
CATCAGCGATGGCCACGGACGGTCTGTCACCATGCAGTCCATTTCCAGCA
GTCTTAAGGAAACAATGAATCCCAAGGATATTATGACAGATGCTATACAC
AACTTCCATCCGCAGTACCAGCAGTACACGCAGTACAGCTCAGAAGTAAC
CTCGGCTCAGCGATACGAAAAGCTCTAAAAGCTTTCTAGACCAT

BS09337.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-RB 1212 CG12004-PB 1..1212 17..1228 6045 99.9 Plus
CG12004-RA 1212 CG12004-PA 1..1212 17..1228 6045 99.9 Plus
CG12004-RD 1461 CG12004-PD 1..1177 17..1193 5885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-RB 2002 CG12004-RB 86..1299 16..1229 6055 99.9 Plus
CG12004-RA 2278 CG12004-RA 362..1575 16..1229 6055 99.9 Plus
CG12004-RD 2882 CG12004-RD 362..1539 16..1193 5890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1572962..1573310 687..1035 1730 99.7 Plus
3L 28110227 3L 1572522..1572782 433..693 1305 100 Plus
3L 28110227 3L 1571986..1572238 16..268 1265 100 Plus
3L 28110227 3L 1572289..1572457 266..434 845 100 Plus
3L 28110227 3L 1573678..1573764 1107..1193 435 100 Plus
3L 28110227 3L 1573544..1573621 1032..1109 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:22:27 has no hits.

BS09337.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:11 Download gff for BS09337.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RB 86..1299 16..1229 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:59 Download gff for BS09337.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 363..1572 17..1226 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:36 Download gff for BS09337.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RB 87..1296 17..1226 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:15 Download gff for BS09337.complete
Subject Subject Range Query Range Percent Splice Strand
CG12004-RA 363..1572 17..1226 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:15 Download gff for BS09337.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1572969..1573308 694..1033 100 -> Plus
3L 1573546..1573620 1034..1108 100 -> Plus
3L 1573680..1573764 1109..1193 100 -> Plus
3L 1573994..1574026 1194..1226 96   Plus
3L 1571987..1572238 17..268 100 -> Plus
3L 1572292..1572457 269..434 100 -> Plus
3L 1572524..1572782 435..693 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:59 Download gff for BS09337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1571987..1572238 17..268 100 -> Plus
arm_3L 1572292..1572457 269..434 100 -> Plus
arm_3L 1572524..1572782 435..693 100 -> Plus
arm_3L 1572969..1573308 694..1033 100 -> Plus
arm_3L 1573546..1573620 1034..1108 100 -> Plus
arm_3L 1573680..1573764 1109..1193 100 -> Plus
arm_3L 1573994..1574026 1194..1226 96   Plus

BS09337.pep Sequence

Translation from 16 to 1227

> BS09337.pep
MSTTAASLIEAALNASSGNATATTAGSLEATGKPNYVVQVKNTPMSTPLD
PLLHVGDGIFLQTKTAQVLAGVCVWAALFITCQQIYQHLRWYTNPQEQRW
IVRILFIVPIYATYSWISLLFFNSDNVYIYFFTVRDCYEAFVIYNFLSLC
YEYLGGEGNIMSEIRGKPIKTSCLYGTCCLKGKTYTIGFLRFCKQATLQF
CLVKPLVAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLY
LFYFATRDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKANVISPIVD
SAGTVTVEPGTVSAGYQNFFICIEMLFAAIALRYAFPYQVYARSCISDGH
GRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSEVTSAQRY
EKL*

BS09337.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12004-PB 403 CG12004-PB 1..403 1..403 2123 100 Plus
CG12004-PA 403 CG12004-PA 1..403 1..403 2123 100 Plus
CG12004-PD 486 CG12004-PD 1..392 1..392 2070 100 Plus
CG12004-PC 486 CG12004-PC 1..392 1..392 2070 100 Plus
CG5850-PE 468 CG5850-PE 34..318 48..341 449 35.7 Plus