Clone Sequence Records
BS09337.3prime Sequence
909 bp (831 high quality bases) assembled on 2006-01-29
> BS09337.3prime
ATGGTCTAGAAAGCTTTTAGAGCTTTTCGTATCGCTGAGCCGAGGTTACT
TCTGAGCTGTACTGCGTGTACTGCTGGTACTGCGGATGGAAGTTGTGTAT
AGCATCTGTCATAATATCCTTGGGATTCATTGTTTCCTTAAGACTGCTGG
AAATGGACTGCATGGTGACAGACCGTCCGTGGCCATCGCTGATGCAGCTG
CGTGCGTAGACCTGATAGGGGAATGCATAGCGCAGCGCGATGGCGGCGAA
CAGCATTTCGATGCAGATGAAGAAGTTCTGGTATCCGGCGGAGACGGTAC
CGGGTTCCACGGTAACAGTGCCTGCACTGTCTACAATGGGCGAGATAACA
TTGGCCTTCTCCAGGATGGCCAGACCCACGCCCTGCCAGAAGGACAAGAA
GATGACGGACTTAATGGTACAGAACTTTAGCACGGGCTCGAACGGAGTCA
GCAGATCACGCGTGGCGAAGTAGAACAGATAGAGGCCATACAACGCCAGC
GACACGGAGATGTTGTAGATAATCGTGATGTAAATGTAACCGCCATCAGC
ACTCCAATCGCCATCGTGGTAGTGGCCAAATGCCTGCAGAAAGATGATAA
TGAAGGCCACCAGCGGCTTGACCAGGCAGAACTGCAGAGTGGCCTGCTTG
CAGAAGCGCAGGAAGCCAATCGTGTAGGTCTTGCCCTTCAGACAGCAGGT
GCCATACAGGCACGATGTCTTGATGGGCTTGCCGCGAATCTCCGACATAA
TATTGCCCTCGCCACCCAGGTACTCATAGCACAGCGACAAGAAGTTGTAG
ATGACAAAGGCTTCGTAGCAGTCGCGCACCGTANAGAAGTAGATGTAAAC
GTTATCCGAGTTGAAGAAAAGCAGACTGATCCAGGAGTATGTGGCATAGA
TGGGCACAT
BS09337.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12004-PA | 1212 | CG12004-RA | 321..1212 | 908..17 | 4416 | 99.7 | Minus |
CG12004-PB | 1212 | CG12004-RB | 321..1212 | 908..17 | 4416 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12004-RB | 2002 | CG12004-RB | 407..1299 | 908..16 | 4439 | 99.8 | Minus |
CG12004-RA | 2278 | CG12004-RA | 683..1575 | 908..16 | 4439 | 99.8 | Minus |
CG12004-RD | 2882 | CG12004-RD | 683..1539 | 908..52 | 4274 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1572962..1573310 | 558..210 | 1730 | 99.7 | Minus |
3L | 28110227 | 3L | 1572522..1572782 | 812..552 | 1305 | 100 | Minus |
3L | 28110227 | 3L | 1572360..1572457 | 908..811 | 479 | 99 | Minus |
3L | 28110227 | 3L | 1573678..1573764 | 138..52 | 435 | 100 | Minus |
3L | 28110227 | 3L | 1573544..1573621 | 213..136 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:43:43 has no hits.
BS09337.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:27 Download gff for
BS09337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-PA | 319..1212 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:14:59 Download gff for
BS09337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-PB | 319..1212 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:09 Download gff for
BS09337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-RA | 681..1575 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:38 Download gff for
BS09337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-RA | 681..1575 | 16..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:38 Download gff for
BS09337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1572524..1572782 | 552..810 | 100 | -> | Minus |
3L | 1572358..1572457 | 811..909 | 98 | -> | Minus |
3L | 1572969..1573308 | 212..551 | 100 | -> | Minus |
3L | 1573546..1573620 | 137..211 | 100 | -> | Minus |
3L | 1573680..1573764 | 52..136 | 100 | -> | Minus |
3L | 1573994..1574029 | 16..51 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:09 Download gff for
BS09337.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1572358..1572457 | 811..909 | 98 | -> | Minus |
arm_3L | 1572524..1572782 | 552..810 | 100 | -> | Minus |
arm_3L | 1572969..1573308 | 212..551 | 100 | -> | Minus |
arm_3L | 1573546..1573620 | 137..211 | 100 | -> | Minus |
arm_3L | 1573680..1573764 | 52..136 | 100 | -> | Minus |
arm_3L | 1573994..1574029 | 16..51 | 97 | | Minus |
BS09337.5prime Sequence
860 bp (857 high quality bases) assembled on 2006-01-29
> BS09337.5prime
GAAGTTATCAGTCGACATGAGCACAACCGCCGCCAGTCTCATCGAGGCGG
CTCTAAATGCCAGTAGTGGAAACGCCACGGCTACAACTGCGGGATCGCTT
GAGGCTACAGGGAAGCCCAACTACGTGGTGCAGGTAAAGAACACTCCGAT
GAGCACGCCGCTGGACCCGCTGCTCCACGTGGGCGATGGCATCTTCCTGC
AGACAAAGACCGCCCAGGTTCTAGCTGGGGTGTGCGTCTGGGCCGCCCTC
TTCATCACATGTCAACAGATCTACCAGCACCTGCGCTGGTACACGAATCC
ACAGGAGCAGCGCTGGATCGTGCGCATTTTGTTCATTGTGCCCATCTATG
CCACATACTCCTGGATCAGTCTGCTTTTCTTCAACTCGGATAACGTTTAC
ATCTACTTCTTTACGGTGCGCGACTGCTACGAAGCCTTTGTCATCTACAA
CTTCTTGTCGCTGTGCTATGAGTACCTGGGTGGCGAGGGCAATATTATGT
CGGAGATTCGCGGCAAGCCCATCAAGACATCGTGCCTGTATGGCACCTGC
TGTCTGAAGGGCAAGACCTACACGATTGGCTTCCTGCGCTTCTGCAAGCA
GGCCACTCTGCAGTTCTGCCTGGTCAAGCCGCTGGTGGCCTTCATTATCA
TCTTTCTGCAGGCATTTGGCCACTACCACGATGGCGATTGGAGTGCTGAT
GGCGGTTACATTTACATCACGATTATCTACAACATCTCCGTGTCGCTGGC
GTTGTATGGCCTCTATCTGTTCTACTTCGCCACGCGTGATCTGCTGACTC
CGTTCGAGCCCGTGCTAAAGTTCTGTACCATTAAGTCCGTCATCTTCTTG
TCCTTCTGGC
BS09337.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12004-PA | 1212 | CG12004-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
CG12004-PB | 1212 | CG12004-RB | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12004-RD | 2882 | CG12004-RD | 362..1206 | 16..860 | 4225 | 100 | Plus |
CG12004-RC | 2172 | CG12004-RC | 362..1206 | 16..860 | 4225 | 100 | Plus |
CG12004-RB | 2002 | CG12004-RB | 86..930 | 16..860 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1572522..1572782 | 433..693 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 1571986..1572238 | 16..268 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 1572962..1573135 | 687..860 | 855 | 99.4 | Plus |
3L | 28110227 | 3L | 1572289..1572457 | 266..434 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:58:04 has no hits.
BS09337.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:28 Download gff for
BS09337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-PA | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:00 Download gff for
BS09337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-PB | 1..844 | 17..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:25:42 Download gff for
BS09337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-RA | 362..1206 | 16..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:15:05 Download gff for
BS09337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-RB | 86..930 | 16..860 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:15:05 Download gff for
BS09337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1572969..1573135 | 694..860 | 100 | | Plus |
3L | 1571986..1572238 | 16..268 | 100 | -> | Plus |
3L | 1572292..1572457 | 269..434 | 100 | -> | Plus |
3L | 1572524..1572782 | 435..693 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:25:42 Download gff for
BS09337.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1571986..1572238 | 16..268 | 100 | -> | Plus |
arm_3L | 1572292..1572457 | 269..434 | 100 | -> | Plus |
arm_3L | 1572524..1572782 | 435..693 | 100 | -> | Plus |
arm_3L | 1572969..1573135 | 694..860 | 100 | | Plus |
BS09337.complete Sequence
1244 bp assembled on 2008-08-15
GenBank Submission: FJ636398
> BS09337.complete
GAAGTTATCAGTCGACATGAGCACAACCGCCGCCAGTCTCATCGAGGCGG
CTCTAAATGCCAGTAGTGGAAACGCCACGGCTACAACTGCGGGATCGCTT
GAGGCTACAGGGAAGCCCAACTACGTGGTGCAGGTAAAGAACACTCCGAT
GAGCACGCCGCTGGACCCGCTGCTCCACGTGGGCGATGGCATCTTCCTGC
AGACAAAGACCGCCCAGGTTCTAGCTGGGGTGTGCGTCTGGGCCGCCCTC
TTCATCACATGTCAACAGATCTACCAGCACCTGCGCTGGTACACGAATCC
ACAGGAGCAGCGCTGGATCGTGCGCATTTTGTTCATTGTGCCCATCTATG
CCACATACTCCTGGATCAGTCTGCTTTTCTTCAACTCGGATAACGTTTAC
ATCTACTTCTTTACGGTGCGCGACTGCTACGAAGCCTTTGTCATCTACAA
CTTCTTGTCGCTGTGCTATGAGTACCTGGGTGGCGAGGGCAATATTATGT
CGGAGATTCGCGGCAAGCCCATCAAGACATCGTGCCTGTATGGCACCTGC
TGTCTGAAGGGCAAGACCTACACGATTGGCTTCCTGCGCTTCTGCAAGCA
GGCCACTCTGCAGTTCTGCCTGGTCAAGCCGCTGGTGGCCTTCATTATCA
TCTTTCTGCAGGCATTTGGCCACTACCACGATGGCGATTGGAGTGCTGAT
GGCGGTTACATTTACATCACGATTATCTACAACATCTCCGTGTCGCTGGC
GTTGTATGGCCTCTATCTGTTCTACTTCGCCACGCGTGATCTGCTGACTC
CGTTCGAGCCCGTGCTAAAGTTCTGTACCATTAAGTCCGTCATCTTCTTG
TCCTTCTGGCAGGGCGTGGGTCTGGCCATCCTGGAGAAGGCCAATGTTAT
CTCGCCCATTGTAGACAGTGCAGGCACTGTTACCGTGGAACCCGGTACCG
TCTCCGCCGGATACCAGAACTTCTTCATCTGCATCGAAATGCTGTTCGCC
GCCATCGCGCTGCGCTATGCATTCCCCTATCAGGTCTACGCACGCAGCTG
CATCAGCGATGGCCACGGACGGTCTGTCACCATGCAGTCCATTTCCAGCA
GTCTTAAGGAAACAATGAATCCCAAGGATATTATGACAGATGCTATACAC
AACTTCCATCCGCAGTACCAGCAGTACACGCAGTACAGCTCAGAAGTAAC
CTCGGCTCAGCGATACGAAAAGCTCTAAAAGCTTTCTAGACCAT
BS09337.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12004-RB | 1212 | CG12004-PB | 1..1212 | 17..1228 | 6045 | 99.9 | Plus |
CG12004-RA | 1212 | CG12004-PA | 1..1212 | 17..1228 | 6045 | 99.9 | Plus |
CG12004-RD | 1461 | CG12004-PD | 1..1177 | 17..1193 | 5885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12004-RB | 2002 | CG12004-RB | 86..1299 | 16..1229 | 6055 | 99.9 | Plus |
CG12004-RA | 2278 | CG12004-RA | 362..1575 | 16..1229 | 6055 | 99.9 | Plus |
CG12004-RD | 2882 | CG12004-RD | 362..1539 | 16..1193 | 5890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1572962..1573310 | 687..1035 | 1730 | 99.7 | Plus |
3L | 28110227 | 3L | 1572522..1572782 | 433..693 | 1305 | 100 | Plus |
3L | 28110227 | 3L | 1571986..1572238 | 16..268 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 1572289..1572457 | 266..434 | 845 | 100 | Plus |
3L | 28110227 | 3L | 1573678..1573764 | 1107..1193 | 435 | 100 | Plus |
3L | 28110227 | 3L | 1573544..1573621 | 1032..1109 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:22:27 has no hits.
BS09337.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:11 Download gff for
BS09337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-RB | 86..1299 | 16..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:59 Download gff for
BS09337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-RA | 363..1572 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:01:36 Download gff for
BS09337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-RB | 87..1296 | 17..1226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:15 Download gff for
BS09337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12004-RA | 363..1572 | 17..1226 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:15 Download gff for
BS09337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1572969..1573308 | 694..1033 | 100 | -> | Plus |
3L | 1573546..1573620 | 1034..1108 | 100 | -> | Plus |
3L | 1573680..1573764 | 1109..1193 | 100 | -> | Plus |
3L | 1573994..1574026 | 1194..1226 | 96 | | Plus |
3L | 1571987..1572238 | 17..268 | 100 | -> | Plus |
3L | 1572292..1572457 | 269..434 | 100 | -> | Plus |
3L | 1572524..1572782 | 435..693 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:59 Download gff for
BS09337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1571987..1572238 | 17..268 | 100 | -> | Plus |
arm_3L | 1572292..1572457 | 269..434 | 100 | -> | Plus |
arm_3L | 1572524..1572782 | 435..693 | 100 | -> | Plus |
arm_3L | 1572969..1573308 | 694..1033 | 100 | -> | Plus |
arm_3L | 1573546..1573620 | 1034..1108 | 100 | -> | Plus |
arm_3L | 1573680..1573764 | 1109..1193 | 100 | -> | Plus |
arm_3L | 1573994..1574026 | 1194..1226 | 96 | | Plus |
BS09337.pep Sequence
Translation from 16 to 1227
> BS09337.pep
MSTTAASLIEAALNASSGNATATTAGSLEATGKPNYVVQVKNTPMSTPLD
PLLHVGDGIFLQTKTAQVLAGVCVWAALFITCQQIYQHLRWYTNPQEQRW
IVRILFIVPIYATYSWISLLFFNSDNVYIYFFTVRDCYEAFVIYNFLSLC
YEYLGGEGNIMSEIRGKPIKTSCLYGTCCLKGKTYTIGFLRFCKQATLQF
CLVKPLVAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLY
LFYFATRDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKANVISPIVD
SAGTVTVEPGTVSAGYQNFFICIEMLFAAIALRYAFPYQVYARSCISDGH
GRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSEVTSAQRY
EKL*
BS09337.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12004-PB | 403 | CG12004-PB | 1..403 | 1..403 | 2123 | 100 | Plus |
CG12004-PA | 403 | CG12004-PA | 1..403 | 1..403 | 2123 | 100 | Plus |
CG12004-PD | 486 | CG12004-PD | 1..392 | 1..392 | 2070 | 100 | Plus |
CG12004-PC | 486 | CG12004-PC | 1..392 | 1..392 | 2070 | 100 | Plus |
CG5850-PE | 468 | CG5850-PE | 34..318 | 48..341 | 449 | 35.7 | Plus |