Clone Sequence Records
BS09339.3prime Sequence
904 bp (892 high quality bases) assembled on 2006-01-29
> BS09339.3prime
ATGGTCTAGAAAGCTTTTAAAGATGTTCGATCTGATGTCGCGGTTTGAGC
AAAACCACCACCGCTGTTATGTTATCCTGGGAATCCCGCTCCTTGGCAGC
CTCTATCAGCAGTTTGGGAATGTCGTCCAACTTCATTGTGGTATCCGCTA
GGGAATCGTAAACGGTTTCGATTATGAGCGACTCGGGCACATGATCCCAC
AGGCCATCGGTGCCTAGTACGAGAAAGTCGTGAGCCTCATTTAACTGCAC
ATCCACGAAGTCCGGCTCTGCGATCACTGCCTCAAGGCTGTAGTCGCCAA
TGGAGCGGGCCACGTTAAGAATGCCATTTACACGCCACTGCCCCTGGGCG
TGGAGCACTGTTCCACCAGCTGTTTCTATTCTCTTGCGCTCATCCGGATT
CTCTGGCTTGTGCGGTTTCACCAGCTGCAGTTGAGTCCGCTTGCCCACGA
GAAGGGCCTTGGAATCGCCCACCCAAGCGATATAAAGCTGATCCTTTGTG
ATCAAGGCACACACGCTGGTTGTGCCGCTGGTGATCTTCTTCTGGGTGAA
ACGCTCGTCGGCCAGCAAAAATGCCGACTCGAAGGCATTGCGATAAAAGT
CTGGGGAGAATGCAGCAGGATCTGGATTTGCTTTAAGCTGATCGGCTAGC
AGTTGTGGGAGTTGGCTGGTTGCATAGGTGGCGGATAAAGAGCCAGAGTG
ACCATCAAAGACGCCAAAAAAACGGGTGGTCTTGTCCAGCAGCTCGTACA
TTTCACCAAATCGATCCAGGCAAACACAGCGATCCTCCATTTTGCGGGGT
TTGTTCTTTACAGCGGCAGATGTGTGCAGGGGTTCTTTCTGCTGGTGGCA
CTCGCAGTTTTCCGGCGCCGCCTCATCAGCGAAGTCCTTGAGGCGATCCA
CCTC
BS09339.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10376-PA | 1287 | CG10376-RA | 400..1287 | 904..17 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10376-RA | 2500 | CG10376-RA | 592..1482 | 904..14 | 4455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18701624..18702514 | 14..904 | 4455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:51:50 has no hits.
BS09339.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:31 Download gff for
BS09339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-PA | 400..1287 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:05 Download gff for
BS09339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-PA | 400..1287 | 17..904 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:19 Download gff for
BS09339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 592..1487 | 6..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:11 Download gff for
BS09339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 592..1487 | 6..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:11 Download gff for
BS09339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18701619..18702514 | 6..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:19 Download gff for
BS09339.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18701619..18702514 | 6..904 | 99 | | Plus |
BS09339.5prime Sequence
870 bp (831 high quality bases) assembled on 2006-01-29
> BS09339.5prime
GAAGTTATCAGTCGACATGTCGTCAGATGCGATTCCCGCATCGGAATGTG
CGCACCTGATGGAATTCAAGCGATTTCTGGTCAGCACGGCGGAGAAGGCA
GCAGCCGTAAGCGAGGAGGTGGTCAGCCGGAGTTGTGTAACTCGTACGGC
CAATGAGACATACAAAGTGTCCGGCGAGGAGCGTCATGCCGAATTGGTCT
CAGCTATTTGGAAACAACTGGAGACTCGAGGATGTCCGGCGCAGTTCCGG
ATTAAGCTACTCCATCGAAGCACACAGCAGCTGGAGCAGGATCTGTGCTT
TGCCAAGGAGTGTGAAGTCACCGTGGAGGGTCCGCCGCAGTACGATCTTC
TCAAGCTGCAGAAGTTCGTGGCCAGTGAGTTTGAGAAGTACATCCTAAAA
CTCACCGACAACTCGGAGGTGGATCGCCTCAAGGACTTCGCTGATGAGGC
GGCGCCGGAAAACTGCGAGTGCCACCAGCAGAAAGAACCCCTGCACACAT
CTGCCGCTGTAAAGAACAAACCCCGCAAAATGGAGGATCGCTGTGTTTGC
CTGGATCGATTTGGTGAAATGTACGAGCTGCTGGACAAGACCACCCGTTT
TTTTGGCGTCTTTGATGGTCACTCTGGCTCTTTATCCGCCACCTATGCAA
CCAGCCAACTCCCACAACTGCTAGCCGATCAGCTTAAAGCAAATCCAGAT
CCTGCTGCATTCTCCCCAGACTTTTATCGCAATGCCTTCGAGTCGGCATT
TTTGCTGGCCGACGAGCGTTTCACCCAGAAGAAGATCACCAGCGGCACAA
CCAGCGTGTGTGCCTTGATCACAAAGGATCAGCTTTATATCGCTTGGGTG
GGCGATTCAAGGCCCTTCTC
BS09339.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10376-PA | 1287 | CG10376-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10376-RA | 2500 | CG10376-RA | 193..1047 | 17..870 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18702059..18702913 | 870..17 | 4225 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:24:28 has no hits.
BS09339.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:32 Download gff for
BS09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-PA | 1..855 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:06 Download gff for
BS09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-PA | 1..855 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:23:13 Download gff for
BS09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 190..1047 | 10..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:34:27 Download gff for
BS09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 190..1047 | 10..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:34:27 Download gff for
BS09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18702059..18702916 | 10..870 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:23:13 Download gff for
BS09339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18702059..18702916 | 10..870 | 99 | | Minus |
BS09339.complete Sequence
1319 bp (1319 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636399
> BS09339.complete
GAAGTTATCAGTCGACATGTCGTCAGATGCGATTCCCGCATCGGAATGTG
CGCACCTGATGGAATTCAAGCGATTTCTGGTCAGCACGGCGGAGAAGGCA
GCAGCCGTAAGCGAGGAGGTGGTCAGCCGGAGTTGTGTAACTCGTACGGC
CAATGAGACATACAAAGTGTCCGGCGAGGAGCGTCATGCCGAATTGGTCT
CAGCTATTTGGAAACAACTGGAGACTCGAGGATGTCCGGCGCAGTTCCGG
ATTAAGCTACTCCATCGAAGCACACAGCAGCTGGAGCAGGATCTGTGCTT
TGCCAAGGAGTGTGAAGTCACCGTGGAGGGTCCGCCGCAGTACGATCTTC
TCAAGCTGCAGAAGTTCGTGGCCAGTGAGTTTGAGAAGTACATCCTAAAA
CTCACCGACAACTCGGAGGTGGATCGCCTCAAGGACTTCGCTGATGAGGC
GGCGCCGGAAAACTGCGAGTGCCACCAGCAGAAAGAACCCCTGCACACAT
CTGCCGCTGTAAAGAACAAACCCCGCAAAATGGAGGATCGCTGTGTTTGC
CTGGATCGATTTGGTGAAATGTACGAGCTGCTGGACAAGACCACCCGTTT
TTTTGGCGTCTTTGATGGTCACTCTGGCTCTTTATCCGCCACCTATGCAA
CCAGCCAACTCCCACAACTGCTAGCCGATCAGCTTAAAGCAAATCCAGAT
CCTGCTGCATTCTCCCCAGACTTTTATCGCAATGCCTTCGAGTCGGCATT
TTTGCTGGCCGACGAGCGTTTCACCCAGAAGAAGATCACCAGCGGCACAA
CCAGCGTGTGTGCCTTGATCACAAAGGATCAGCTTTATATCGCTTGGGTG
GGCGATTCCAAGGCCCTTCTCGTGGGCAAGCGGACTCAACTGCAGCTGGT
GAAACCGCACAAGCCAGAGAATCCGGATGAGCGCAAGAGAATAGAAACAG
CTGGTGGAACAGTGCTCCACGCCCAGGGGCAGTGGCGTGTAAATGGCATT
CTTAACGTGGCCCGCTCCATTGGCGACTACAGCCTTGAGGCAGTGATCGC
AGAGCCGGACTTCGTGGATGTGCAGTTAAATGAGGCTCACGACTTTCTCG
TACTAGGCACCGATGGCCTGTGGGATCATGTGCCCGAGTCGCTCATAATC
GAAACCGTTTACGATTCCCTAGCGGATACCACAATGAAGTTGGACGACAT
TCCCAAACTGCTGATAGAGGCTGCCAAGGAGCGGGATTCCCAGGATAACA
TAACAGCGGTGGTGGTTTTGCTCAAACCGCGACATCAGATCGAACATCTT
TAAAAGCTTTCTAGACCAT
BS09339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10376-RA | 1287 | CG10376-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:26:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10376-RA | 2500 | CG10376-RA | 193..1482 | 17..1306 | 6450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18701624..18702913 | 1306..17 | 6450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:26:42 has no hits.
BS09339.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:30 Download gff for
BS09339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 1..1287 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:56 Download gff for
BS09339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 203..1500 | 10..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:17 Download gff for
BS09339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 193..1477 | 17..1301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:30 Download gff for
BS09339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 203..1500 | 10..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:42 Download gff for
BS09339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10376-RA | 193..1477 | 17..1301 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:42 Download gff for
BS09339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18701629..18702913 | 17..1301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:17 Download gff for
BS09339.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18701629..18702913 | 17..1301 | 100 | | Minus |
BS09339.pep Sequence
Translation from 16 to 1302
> BS09339.pep
MSSDAIPASECAHLMEFKRFLVSTAEKAAAVSEEVVSRSCVTRTANETYK
VSGEERHAELVSAIWKQLETRGCPAQFRIKLLHRSTQQLEQDLCFAKECE
VTVEGPPQYDLLKLQKFVASEFEKYILKLTDNSEVDRLKDFADEAAPENC
ECHQQKEPLHTSAAVKNKPRKMEDRCVCLDRFGEMYELLDKTTRFFGVFD
GHSGSLSATYATSQLPQLLADQLKANPDPAAFSPDFYRNAFESAFLLADE
RFTQKKITSGTTSVCALITKDQLYIAWVGDSKALLVGKRTQLQLVKPHKP
ENPDERKRIETAGGTVLHAQGQWRVNGILNVARSIGDYSLEAVIAEPDFV
DVQLNEAHDFLVLGTDGLWDHVPESLIIETVYDSLADTTMKLDDIPKLLI
EAAKERDSQDNITAVVVLLKPRHQIEHL*
BS09339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10376-PA | 428 | CG10376-PA | 1..428 | 1..428 | 2210 | 100 | Plus |
| CG6036-PA | 371 | CG6036-PA | 56..283 | 192..419 | 270 | 29.2 | Plus |
| alph-PF | 332 | CG1906-PF | 55..282 | 195..417 | 252 | 29.2 | Plus |
| alph-PC | 368 | CG1906-PC | 55..282 | 195..417 | 252 | 29.2 | Plus |
| alph-PD | 368 | CG1906-PD | 55..282 | 195..417 | 252 | 29.2 | Plus |
