Clone Sequence Records
BS09340.3prime Sequence
914 bp (891 high quality bases) assembled on 2006-01-29
> BS09340.3prime
ATGGTCTAGAAAGCTTTCACTTTTGTTGCTGACGTTGCTTTGATTGCAGA
AGGGCGGACAATACCAAAGCAGTATCTAGCTCCTGCTGATTACCAGGTTC
GTTGTCCAAAGATATTTCAGCAGCACGTTCGTGAAACCGAGCAAGGACGC
GAGAGCGATAGTCCACACTGCCCGCCAGCGGATTTCCAGTAAGTCGAAGG
GTCTCTAGAAGCGGAAGATTGGCGACATGATTAACTTCATCAAGCTCTTC
GATCTGATTGGAACTAAGGTCCAGATTAACCAGTGAAAGTAGTTTTCGGA
GACCACTTAGTGTCTTGATTTTGTTCTGAGCTAACTTCAGAGTGACTAGG
TTTCCCATCGTTAAATGCCAGTCCACACACTCTGCTATAAGATTCCCAGA
AAGCGAAAGCAACTGGAGTTGAGGAAGTTCGGCCAGATTTTGGACGGTCC
GTATTCGATTCTGGTCAAGGATTAGGCGTCTGAGTTTTGGAGCTGTTCGT
ACACTGCCATCGATTTGGGTTAGCAAATTGCCTGTCAGGTCGAGTTCTGT
TATCTCTTGCCACGCATCCGCACTGACCAAGGCACTACCATTAGAAGTGG
AGGGACCGGATCCGGAGGGGGATGCAAGGATAGTCTCTGGCAGCAGGCTT
GGCACATCGCAGTGCTTGTGCAGATTGTCGCAGAGCAGGACTTGATTTAT
GTTCTGTATGGTTGTGTTATGAACACAGATTGTCTGGAGAGTCGGCTTCA
GAAGTTCGATGTCCACAATGTTTTCGGTAGACAAGGCCGAAAATTTGAGC
GTCTTGAGATTGCGAAAGGCATTTAGATTAAAACTTAGTCTGTTCGGAAA
TATATTGCTGCGATCGATTGGCACATCAACCGTATTGTAATCCTGGGCAT
AGCTAGCATTGTCC
BS09340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11807-PA | 1476 | CG11807-RA | 579..1476 | 914..17 | 4215 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11807-RC | 1993 | CG11807-RC | 795..1692 | 914..17 | 4325 | 98.8 | Minus |
CG11807-RB | 2106 | CG11807-RB | 849..1746 | 914..17 | 4325 | 98.8 | Minus |
CG11807-RA | 1945 | CG11807-RA | 688..1585 | 914..17 | 4325 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15203150..15203901 | 914..163 | 3610 | 98.7 | Minus |
2R | 25286936 | 2R | 15203960..15204106 | 163..17 | 720 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:02:15 has no hits.
BS09340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:33 Download gff for
BS09340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-PA | 579..1476 | 17..914 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:08 Download gff for
BS09340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-PA | 579..1476 | 17..914 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:40 Download gff for
BS09340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 688..1592 | 8..914 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:15 Download gff for
BS09340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 688..1592 | 8..914 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:15 Download gff for
BS09340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15203150..15203901 | 163..914 | 98 | -> | Minus |
2R | 15203961..15204113 | 8..162 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:40 Download gff for
BS09340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11090655..11091406 | 163..914 | 98 | -> | Minus |
arm_2R | 11091466..11091618 | 8..162 | 96 | | Minus |
BS09340.5prime Sequence
909 bp (829 high quality bases) assembled on 2006-01-29
> BS09340.5prime
GAAGTTATCAGTCGACATGGCTTGCTATTACCGCCAGCATGCGGACACCA
CGGTGACGGTTCCAAAGTTTAGCAACGAGAGTTCCAGCGGCGGAGTGACC
TACTACGATATCAAGGTGCGAGTGGGCAAGGTGGAATGGCTGGTGGAGCG
CCGTTATCGGGACTTTGCAAATCTTCACGAGAAGCTGGTTGGCGAGATCT
CCATCAGTAAGAAGTTGCTGCCGCCGAAGAAGCTGGTTGGAAACAAGCAG
CCCTCCTTTTTGGAGCAACGTCGTGAACAGTTGGAAATTTATCTTCAGGA
GCTTCTCATCTACTTCCGGACAGAACTGCCGCGAGCTCTGGCCGAGTTTC
TGGACTTTAACAAGTACGACATTATTTATCTGCTACAAGATCTTGCCAAG
CTGTTCAATGAAAGCGGTGATGCTCTGCTCAGCTCCAAGAAGGAATACAA
CCTTTCAGCCCTAGAGGTCTACGCTATCAGTGAGCGGCTTAGTCTTCCCT
GCCCACCGAGCCTGGATCGCGGTGGAAAGTACGACTTCTCGCACGTGCTG
GACTTTTGCACACAACTTGTCGCTTTGGTGGTCACCCCGGTCAAGGACAA
TGCTAGCTATGCCCAGGATTACAATACGGTTGATGTGCCAATCGATCGCA
GCAATATTATTCCGAACAGACTAAGTTTTAATCTAAATGCCTTTCGCAAT
CTCAAGACGCTCAAATTTTCGGCCTTGTCTACCGAANACATTGTGGACAT
CGAACTTCTGAAGCCGACTCTCCAGACAATCTGTGTTCATAACACAACCA
TACAGAACATAAATCAAGTCCTGCTCTGCGACNATCTGCACAAGCACTGC
GATGTGCTCAGCCTGCTGCCAGAGACTATCCTTGCATCCCCCTCCGGATC
CGGTCCCTC
BS09340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11807-PA | 1476 | CG11807-RA | 1..893 | 17..909 | 4277 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11807-RC | 1993 | CG11807-RC | 217..1109 | 17..909 | 4353 | 99.1 | Plus |
CG11807-RB | 2106 | CG11807-RB | 271..1163 | 17..909 | 4353 | 99.1 | Plus |
CG11807-RA | 1945 | CG11807-RA | 110..1002 | 17..909 | 4353 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15203020..15203464 | 465..909 | 2143 | 98.7 | Plus |
2R | 25286936 | 2R | 15201892..15202129 | 231..468 | 1160 | 99.2 | Plus |
2R | 25286936 | 2R | 15201616..15201831 | 17..232 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:16:35 has no hits.
BS09340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:34 Download gff for
BS09340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:10 Download gff for
BS09340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-PA | 1..893 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:36 Download gff for
BS09340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 108..1002 | 13..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:26 Download gff for
BS09340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 108..1002 | 13..909 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:26 Download gff for
BS09340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15201614..15201831 | 13..232 | 99 | -> | Plus |
2R | 15201894..15202127 | 233..466 | 99 | -> | Plus |
2R | 15203022..15203464 | 467..909 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:36 Download gff for
BS09340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11089119..11089336 | 13..232 | 99 | -> | Plus |
arm_2R | 11089399..11089632 | 233..466 | 99 | -> | Plus |
arm_2R | 11090527..11090969 | 467..909 | 98 | | Plus |
BS09340.complete Sequence
1508 bp (1508 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636400
> BS09340.complete
GAAGTTATCAGTCGACATGGCTTGCTATTACCGCCAGCATGCGGACACCA
CGGTGACGGTTCCAAAGTTTAGCAACGAGAGTTCCAGCGGCGGAGTGACC
TACTACGATATCAAGGTGCGAGTGGGCAAGGTGGAATGGCTGGTGGAGCG
CCGTTATCGGGACTTTGCAAATCTTCACGAGAAGCTGGTTGGCGAGATCT
CCATCAGTAAGAAGTTGCTGCCGCCGAAGAAGCTGGTTGGAAACAAGCAG
CCCTCCTTTTTGGAGCAACGTCGTGAACAGTTGGAAATTTATCTTCAGGA
GCTTCTCATCTACTTCCGGACAGAACTGCCGCGAGCTCTGGCCGAGTTTC
TGGACTTTAACAAGTACGACATTATTTATCTGCTACAAGATCTTGCCAAG
CTGTTCAATGAAAGCGGTGATGCTCTGCTCAGCTCCAAGAAGGAATACAA
CCTTTCAGCCCTAGAGGTCTACGCTATCAGTGAGCGGCTTAGTCTTCCCT
GCCCACCGAGCCTGGATCGCGGTGGAAAGTACGACTTCTCGCACGTGCTG
GACTTTTGCACACAACTTGTCGCTTTGGTGGTCACCCCGGTCAAGGACAA
TGCTAGCTATGCCCAGGATTACAATACGGTTGATGTGCCAATCGATCGCA
GCAATATTATTCCGAACAGACTAAGTTTTAATCTAAATGCCTTTCGCAAT
CTCAAGACGCTCAAATTTTCGGCCTTGTCTACCGAAAACATTGTGGACAT
CGAACTTCTGAAGCCGACTCTCCAGACAATCTGTGTTCATAACACAACCA
TACAGAACATAAATCAAGTCCTGCTCTGCGACAATCTGCACAAGCACTGC
GATGTGCCAAGCCTGCTGCCAGAGACTATCCTTGCATCCCCCTCCGGATC
CGGTCCCTCCACTTCTAATGGTAGTGCCTTGGTCAGTGCGGATGCGTGGC
AAGAGATAACAGAACTCGACCTGACAGGCAATTTGCTAACCCAAATCGAT
GGCAGTGTACGAACAGCTCCAAAACTCAGACGCCTAATCCTTGACCAGAA
TCGAATACGGACCGTCCAAAATCTGGCCGAACTTCCTCAACTCCAGTTGC
TTTCGCTTTCTGGGAATCTTATAGCAGAGTGTGTGGACTGGCATTTAACG
ATGGGAAACCTAGTCACTCTGAAGTTAGCTCAGAACAAAATCAAGACACT
AAGTGGTCTCCGAAAACTACTTTCACTGGTTAATCTGGACCTTAGTTCCA
ATCAGATCGAAGAGCTTGATGAAGTTAATCATGTCGCCAATCTTCCGCTT
CTAGAGACCCTTCGACTTACTGGAAATCCGCTGGCGGGCAGTGTGGACTA
TCGCTCTCGCGTCCTTGCTCGGTTTCACGAACGTGCTGCTGAAATATCTT
TGGACAACGAACCTGGTAATCAGCAGGAGCTAGATACTGCTTTGGTATTG
TCCGCCCTTCTGCAATCAAAGCAACGTCAGCAACAAAAGTGAAAGCTTTC
TAGACCAT
BS09340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11807-RC | 1476 | CG11807-PC | 1..1476 | 17..1492 | 7200 | 99.2 | Plus |
CG11807-RB | 1476 | CG11807-PB | 1..1476 | 17..1492 | 7200 | 99.2 | Plus |
CG11807-RA | 1476 | CG11807-PA | 1..1476 | 17..1492 | 7200 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11807-RC | 1993 | CG11807-RC | 217..1692 | 17..1492 | 7200 | 99.2 | Plus |
CG11807-RB | 2106 | CG11807-RB | 271..1746 | 17..1492 | 7200 | 99.2 | Plus |
CG11807-RA | 1945 | CG11807-RA | 110..1585 | 17..1492 | 7200 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15203020..15203901 | 465..1346 | 4275 | 99 | Plus |
2R | 25286936 | 2R | 15201892..15202129 | 231..468 | 1160 | 99.2 | Plus |
2R | 25286936 | 2R | 15201616..15201831 | 17..232 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 15203960..15204106 | 1346..1492 | 720 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:39:15 has no hits.
BS09340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:31 Download gff for
BS09340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 1..1476 | 17..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:57 Download gff for
BS09340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 91..1575 | 13..1501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:40 Download gff for
BS09340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 110..1584 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:32 Download gff for
BS09340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 91..1575 | 13..1501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:05 Download gff for
BS09340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11807-RA | 110..1584 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:05 Download gff for
BS09340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15201616..15201831 | 17..232 | 100 | -> | Plus |
2R | 15201894..15202127 | 233..466 | 99 | -> | Plus |
2R | 15203022..15203901 | 467..1346 | 98 | -> | Plus |
2R | 15203961..15204105 | 1347..1491 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:40 Download gff for
BS09340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11089121..11089336 | 17..232 | 100 | -> | Plus |
arm_2R | 11089399..11089632 | 233..466 | 99 | -> | Plus |
arm_2R | 11090527..11091406 | 467..1346 | 98 | -> | Plus |
arm_2R | 11091466..11091610 | 1347..1491 | 99 | | Plus |
BS09340.pep Sequence
Translation from 16 to 1491
> BS09340.pep
MACYYRQHADTTVTVPKFSNESSSGGVTYYDIKVRVGKVEWLVERRYRDF
ANLHEKLVGEISISKKLLPPKKLVGNKQPSFLEQRREQLEIYLQELLIYF
RTELPRALAEFLDFNKYDIIYLLQDLAKLFNESGDALLSSKKEYNLSALE
VYAISERLSLPCPPSLDRGGKYDFSHVLDFCTQLVALVVTPVKDNASYAQ
DYNTVDVPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKP
TLQTICVHNTTIQNINQVLLCDNLHKHCDVPSLLPETILASPSGSGPSTS
NGSALVSADAWQEITELDLTGNLLTQIDGSVRTAPKLRRLILDQNRIRTV
QNLAELPQLQLLSLSGNLIAECVDWHLTMGNLVTLKLAQNKIKTLSGLRK
LLSLVNLDLSSNQIEELDEVNHVANLPLLETLRLTGNPLAGSVDYRSRVL
ARFHERAAEISLDNEPGNQQELDTALVLSALLQSKQRQQQK*
BS09340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11807-PC | 491 | CG11807-PC | 1..491 | 1..491 | 2483 | 100 | Plus |
CG11807-PB | 491 | CG11807-PB | 1..491 | 1..491 | 2483 | 100 | Plus |
CG11807-PA | 491 | CG11807-PA | 1..491 | 1..491 | 2483 | 100 | Plus |
CG9044-PB | 1295 | CG9044-PB | 6..328 | 123..471 | 229 | 25.4 | Plus |
CG9044-PC | 1318 | CG9044-PC | 6..328 | 123..471 | 229 | 25.4 | Plus |