Clone BS09340 Report

Search the DGRC for BS09340

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG11807-RA
Protein status:BS09340.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09340.3prime Sequence

914 bp (891 high quality bases) assembled on 2006-01-29

> BS09340.3prime
ATGGTCTAGAAAGCTTTCACTTTTGTTGCTGACGTTGCTTTGATTGCAGA
AGGGCGGACAATACCAAAGCAGTATCTAGCTCCTGCTGATTACCAGGTTC
GTTGTCCAAAGATATTTCAGCAGCACGTTCGTGAAACCGAGCAAGGACGC
GAGAGCGATAGTCCACACTGCCCGCCAGCGGATTTCCAGTAAGTCGAAGG
GTCTCTAGAAGCGGAAGATTGGCGACATGATTAACTTCATCAAGCTCTTC
GATCTGATTGGAACTAAGGTCCAGATTAACCAGTGAAAGTAGTTTTCGGA
GACCACTTAGTGTCTTGATTTTGTTCTGAGCTAACTTCAGAGTGACTAGG
TTTCCCATCGTTAAATGCCAGTCCACACACTCTGCTATAAGATTCCCAGA
AAGCGAAAGCAACTGGAGTTGAGGAAGTTCGGCCAGATTTTGGACGGTCC
GTATTCGATTCTGGTCAAGGATTAGGCGTCTGAGTTTTGGAGCTGTTCGT
ACACTGCCATCGATTTGGGTTAGCAAATTGCCTGTCAGGTCGAGTTCTGT
TATCTCTTGCCACGCATCCGCACTGACCAAGGCACTACCATTAGAAGTGG
AGGGACCGGATCCGGAGGGGGATGCAAGGATAGTCTCTGGCAGCAGGCTT
GGCACATCGCAGTGCTTGTGCAGATTGTCGCAGAGCAGGACTTGATTTAT
GTTCTGTATGGTTGTGTTATGAACACAGATTGTCTGGAGAGTCGGCTTCA
GAAGTTCGATGTCCACAATGTTTTCGGTAGACAAGGCCGAAAATTTGAGC
GTCTTGAGATTGCGAAAGGCATTTAGATTAAAACTTAGTCTGTTCGGAAA
TATATTGCTGCGATCGATTGGCACATCAACCGTATTGTAATCCTGGGCAT
AGCTAGCATTGTCC

BS09340.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11807-PA 1476 CG11807-RA 579..1476 914..17 4215 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11807-RC 1993 CG11807-RC 795..1692 914..17 4325 98.8 Minus
CG11807-RB 2106 CG11807-RB 849..1746 914..17 4325 98.8 Minus
CG11807-RA 1945 CG11807-RA 688..1585 914..17 4325 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15203150..15203901 914..163 3610 98.7 Minus
2R 25286936 2R 15203960..15204106 163..17 720 99.3 Minus
Blast to na_te.dros performed on 2015-02-11 17:02:15 has no hits.

BS09340.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:33 Download gff for BS09340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11807-PA 579..1476 17..914 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:08 Download gff for BS09340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11807-PA 579..1476 17..914 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:45:40 Download gff for BS09340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 688..1592 8..914 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:15 Download gff for BS09340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 688..1592 8..914 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:15 Download gff for BS09340.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15203150..15203901 163..914 98 -> Minus
2R 15203961..15204113 8..162 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:45:40 Download gff for BS09340.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11090655..11091406 163..914 98 -> Minus
arm_2R 11091466..11091618 8..162 96   Minus

BS09340.5prime Sequence

909 bp (829 high quality bases) assembled on 2006-01-29

> BS09340.5prime
GAAGTTATCAGTCGACATGGCTTGCTATTACCGCCAGCATGCGGACACCA
CGGTGACGGTTCCAAAGTTTAGCAACGAGAGTTCCAGCGGCGGAGTGACC
TACTACGATATCAAGGTGCGAGTGGGCAAGGTGGAATGGCTGGTGGAGCG
CCGTTATCGGGACTTTGCAAATCTTCACGAGAAGCTGGTTGGCGAGATCT
CCATCAGTAAGAAGTTGCTGCCGCCGAAGAAGCTGGTTGGAAACAAGCAG
CCCTCCTTTTTGGAGCAACGTCGTGAACAGTTGGAAATTTATCTTCAGGA
GCTTCTCATCTACTTCCGGACAGAACTGCCGCGAGCTCTGGCCGAGTTTC
TGGACTTTAACAAGTACGACATTATTTATCTGCTACAAGATCTTGCCAAG
CTGTTCAATGAAAGCGGTGATGCTCTGCTCAGCTCCAAGAAGGAATACAA
CCTTTCAGCCCTAGAGGTCTACGCTATCAGTGAGCGGCTTAGTCTTCCCT
GCCCACCGAGCCTGGATCGCGGTGGAAAGTACGACTTCTCGCACGTGCTG
GACTTTTGCACACAACTTGTCGCTTTGGTGGTCACCCCGGTCAAGGACAA
TGCTAGCTATGCCCAGGATTACAATACGGTTGATGTGCCAATCGATCGCA
GCAATATTATTCCGAACAGACTAAGTTTTAATCTAAATGCCTTTCGCAAT
CTCAAGACGCTCAAATTTTCGGCCTTGTCTACCGAANACATTGTGGACAT
CGAACTTCTGAAGCCGACTCTCCAGACAATCTGTGTTCATAACACAACCA
TACAGAACATAAATCAAGTCCTGCTCTGCGACNATCTGCACAAGCACTGC
GATGTGCTCAGCCTGCTGCCAGAGACTATCCTTGCATCCCCCTCCGGATC
CGGTCCCTC

BS09340.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11807-PA 1476 CG11807-RA 1..893 17..909 4277 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11807-RC 1993 CG11807-RC 217..1109 17..909 4353 99.1 Plus
CG11807-RB 2106 CG11807-RB 271..1163 17..909 4353 99.1 Plus
CG11807-RA 1945 CG11807-RA 110..1002 17..909 4353 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15203020..15203464 465..909 2143 98.7 Plus
2R 25286936 2R 15201892..15202129 231..468 1160 99.2 Plus
2R 25286936 2R 15201616..15201831 17..232 1080 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:16:35 has no hits.

BS09340.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:34 Download gff for BS09340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11807-PA 1..893 17..909 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:10 Download gff for BS09340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11807-PA 1..893 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:36 Download gff for BS09340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 108..1002 13..909 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:26 Download gff for BS09340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 108..1002 13..909 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:26 Download gff for BS09340.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15201614..15201831 13..232 99 -> Plus
2R 15201894..15202127 233..466 99 -> Plus
2R 15203022..15203464 467..909 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:36 Download gff for BS09340.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11089119..11089336 13..232 99 -> Plus
arm_2R 11089399..11089632 233..466 99 -> Plus
arm_2R 11090527..11090969 467..909 98   Plus

BS09340.complete Sequence

1508 bp (1508 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636400

> BS09340.complete
GAAGTTATCAGTCGACATGGCTTGCTATTACCGCCAGCATGCGGACACCA
CGGTGACGGTTCCAAAGTTTAGCAACGAGAGTTCCAGCGGCGGAGTGACC
TACTACGATATCAAGGTGCGAGTGGGCAAGGTGGAATGGCTGGTGGAGCG
CCGTTATCGGGACTTTGCAAATCTTCACGAGAAGCTGGTTGGCGAGATCT
CCATCAGTAAGAAGTTGCTGCCGCCGAAGAAGCTGGTTGGAAACAAGCAG
CCCTCCTTTTTGGAGCAACGTCGTGAACAGTTGGAAATTTATCTTCAGGA
GCTTCTCATCTACTTCCGGACAGAACTGCCGCGAGCTCTGGCCGAGTTTC
TGGACTTTAACAAGTACGACATTATTTATCTGCTACAAGATCTTGCCAAG
CTGTTCAATGAAAGCGGTGATGCTCTGCTCAGCTCCAAGAAGGAATACAA
CCTTTCAGCCCTAGAGGTCTACGCTATCAGTGAGCGGCTTAGTCTTCCCT
GCCCACCGAGCCTGGATCGCGGTGGAAAGTACGACTTCTCGCACGTGCTG
GACTTTTGCACACAACTTGTCGCTTTGGTGGTCACCCCGGTCAAGGACAA
TGCTAGCTATGCCCAGGATTACAATACGGTTGATGTGCCAATCGATCGCA
GCAATATTATTCCGAACAGACTAAGTTTTAATCTAAATGCCTTTCGCAAT
CTCAAGACGCTCAAATTTTCGGCCTTGTCTACCGAAAACATTGTGGACAT
CGAACTTCTGAAGCCGACTCTCCAGACAATCTGTGTTCATAACACAACCA
TACAGAACATAAATCAAGTCCTGCTCTGCGACAATCTGCACAAGCACTGC
GATGTGCCAAGCCTGCTGCCAGAGACTATCCTTGCATCCCCCTCCGGATC
CGGTCCCTCCACTTCTAATGGTAGTGCCTTGGTCAGTGCGGATGCGTGGC
AAGAGATAACAGAACTCGACCTGACAGGCAATTTGCTAACCCAAATCGAT
GGCAGTGTACGAACAGCTCCAAAACTCAGACGCCTAATCCTTGACCAGAA
TCGAATACGGACCGTCCAAAATCTGGCCGAACTTCCTCAACTCCAGTTGC
TTTCGCTTTCTGGGAATCTTATAGCAGAGTGTGTGGACTGGCATTTAACG
ATGGGAAACCTAGTCACTCTGAAGTTAGCTCAGAACAAAATCAAGACACT
AAGTGGTCTCCGAAAACTACTTTCACTGGTTAATCTGGACCTTAGTTCCA
ATCAGATCGAAGAGCTTGATGAAGTTAATCATGTCGCCAATCTTCCGCTT
CTAGAGACCCTTCGACTTACTGGAAATCCGCTGGCGGGCAGTGTGGACTA
TCGCTCTCGCGTCCTTGCTCGGTTTCACGAACGTGCTGCTGAAATATCTT
TGGACAACGAACCTGGTAATCAGCAGGAGCTAGATACTGCTTTGGTATTG
TCCGCCCTTCTGCAATCAAAGCAACGTCAGCAACAAAAGTGAAAGCTTTC
TAGACCAT

BS09340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11807-RC 1476 CG11807-PC 1..1476 17..1492 7200 99.2 Plus
CG11807-RB 1476 CG11807-PB 1..1476 17..1492 7200 99.2 Plus
CG11807-RA 1476 CG11807-PA 1..1476 17..1492 7200 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11807-RC 1993 CG11807-RC 217..1692 17..1492 7200 99.2 Plus
CG11807-RB 2106 CG11807-RB 271..1746 17..1492 7200 99.2 Plus
CG11807-RA 1945 CG11807-RA 110..1585 17..1492 7200 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15203020..15203901 465..1346 4275 99 Plus
2R 25286936 2R 15201892..15202129 231..468 1160 99.2 Plus
2R 25286936 2R 15201616..15201831 17..232 1080 100 Plus
2R 25286936 2R 15203960..15204106 1346..1492 720 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 14:39:15 has no hits.

BS09340.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:31 Download gff for BS09340.complete
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 1..1476 17..1492 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:57 Download gff for BS09340.complete
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 91..1575 13..1501 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:40 Download gff for BS09340.complete
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 110..1584 17..1491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:32 Download gff for BS09340.complete
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 91..1575 13..1501 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:05 Download gff for BS09340.complete
Subject Subject Range Query Range Percent Splice Strand
CG11807-RA 110..1584 17..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:05 Download gff for BS09340.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15201616..15201831 17..232 100 -> Plus
2R 15201894..15202127 233..466 99 -> Plus
2R 15203022..15203901 467..1346 98 -> Plus
2R 15203961..15204105 1347..1491 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:40 Download gff for BS09340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11089121..11089336 17..232 100 -> Plus
arm_2R 11089399..11089632 233..466 99 -> Plus
arm_2R 11090527..11091406 467..1346 98 -> Plus
arm_2R 11091466..11091610 1347..1491 99   Plus

BS09340.pep Sequence

Translation from 16 to 1491

> BS09340.pep
MACYYRQHADTTVTVPKFSNESSSGGVTYYDIKVRVGKVEWLVERRYRDF
ANLHEKLVGEISISKKLLPPKKLVGNKQPSFLEQRREQLEIYLQELLIYF
RTELPRALAEFLDFNKYDIIYLLQDLAKLFNESGDALLSSKKEYNLSALE
VYAISERLSLPCPPSLDRGGKYDFSHVLDFCTQLVALVVTPVKDNASYAQ
DYNTVDVPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKP
TLQTICVHNTTIQNINQVLLCDNLHKHCDVPSLLPETILASPSGSGPSTS
NGSALVSADAWQEITELDLTGNLLTQIDGSVRTAPKLRRLILDQNRIRTV
QNLAELPQLQLLSLSGNLIAECVDWHLTMGNLVTLKLAQNKIKTLSGLRK
LLSLVNLDLSSNQIEELDEVNHVANLPLLETLRLTGNPLAGSVDYRSRVL
ARFHERAAEISLDNEPGNQQELDTALVLSALLQSKQRQQQK*

BS09340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11807-PC 491 CG11807-PC 1..491 1..491 2483 100 Plus
CG11807-PB 491 CG11807-PB 1..491 1..491 2483 100 Plus
CG11807-PA 491 CG11807-PA 1..491 1..491 2483 100 Plus
CG9044-PB 1295 CG9044-PB 6..328 123..471 229 25.4 Plus
CG9044-PC 1318 CG9044-PC 6..328 123..471 229 25.4 Plus