Clone Sequence Records
BS09342.3prime Sequence
825 bp (824 high quality bases) assembled on 2006-01-29
> BS09342.3prime
ATGGTCTAGAAAGCTTTTAATAGCGCGATGAAGTTCGACGTAGTTGCGGA
GAGCGTGAACGGCTGTAGCTCCTGTTGCGAGTGTAGCGGTTGCGACTAGG
GCTCCTGCGGAGATTACGGTCGTAGCGATCGTTGCGGTAATCATAGCGAT
CACGATAGTTGTCATAGGGCGAAGCGGAGCGATCGTGATACACACGGCGT
CCTCTACGCGGTGAAAATGAGCGTGGAGCTTTTCCACGCGGCTGACGACC
CAAATACACACCCGGAGTTGGGGTATGAGCCCGTTGGGTTATAGAGAAAT
CGACGCGAATACGGCGACCATCCACTTCTATTCCGGAGCAGCTGTCCTTA
GCCGCGCGGGCATCGCTGAGTTTCTCAAAATAAATGAAACAAAAGCCCCG
GGAACGCTGTGTTTGTGCGTCAATCACCATCTGGATGCGTTCGATGGGTC
CGTACTTGTTGAACAGCTCGCGTACCTTGTGCTGCGAGGTATTTGTGTTC
AGTCCGAAGACTCCTATGCAGCGGCTTGCTTGTGGATGTTCGCGAGACTT
GTGCATTCGTTCCCGATCGCGTGATGAACGTCCGGAGCGATGACGCGGCT
CCGGTGGCGGCGACTCCGAGGAGGAACGCGAACGGGAGCGTCGGCGAGAG
GAGGACCGCTGGTGCCGGCGACTGCCACAGTAATCGTAGTCAGACCTGCG
GTCCTTGTGTCCGGATGAAGTTGTCCCCGCTGACGATGATGACGCCGATC
GCTTGTGTTTATATCTGGCGCTGCAATGGAGACGCCCGCTACTGAGTGGC
TCCCGATCCATGTCGACTGATAACT
BS09342.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10128-PG | 795 | tra2-RG | 1..795 | 811..17 | 3850 | 99.3 | Minus |
CG10128-PA | 795 | tra2-RA | 1..795 | 811..17 | 3850 | 99.3 | Minus |
CG10128-PF | 795 | tra2-RF | 1..795 | 811..17 | 3850 | 99.3 | Minus |
CG10128-PC | 681 | tra2-RC | 3..681 | 695..17 | 3270 | 99.2 | Minus |
CG10128-PD | 681 | tra2-RD | 3..681 | 695..17 | 3270 | 99.2 | Minus |
CG10128-PE | 540 | tra2-RE | 1..540 | 556..17 | 2600 | 99.2 | Minus |
CG10128-PB | 411 | tra2-RB | 1..400 | 811..412 | 1925 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-RF | 1381 | CG10128-RF | 171..966 | 811..16 | 3905 | 99.4 | Minus |
tra2-RA | 1376 | CG10128-RA | 166..961 | 811..16 | 3905 | 99.4 | Minus |
tra2-RG | 1391 | CG10128-RG | 181..976 | 811..16 | 3905 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14602502..14602880 | 38..416 | 1850 | 99.2 | Plus |
2R | 25286936 | 2R | 14603347..14603503 | 541..697 | 770 | 99.4 | Plus |
2R | 25286936 | 2R | 14603161..14603289 | 413..541 | 615 | 98.4 | Plus |
2R | 25286936 | 2R | 14603982..14604099 | 694..811 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:23:18 has no hits.
BS09342.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:38 Download gff for
BS09342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10128-PF | 1..795 | 17..811 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:14 Download gff for
BS09342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10128-PG | 1..795 | 17..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:32 Download gff for
BS09342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 176..982 | 8..818 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:57 Download gff for
BS09342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 176..982 | 8..818 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:57 Download gff for
BS09342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14602504..14602876 | 40..412 | 99 | <- | Plus |
2R | 14603161..14603289 | 413..541 | 98 | <- | Plus |
2R | 14603348..14603501 | 542..695 | 99 | <- | Plus |
2R | 14603984..14604104 | 696..818 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:32 Download gff for
BS09342.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10490853..10491006 | 542..695 | 99 | <- | Plus |
arm_2R | 10490009..10490381 | 40..412 | 99 | <- | Plus |
arm_2R | 10490666..10490794 | 413..541 | 98 | <- | Plus |
arm_2R | 10491489..10491609 | 696..818 | 97 | | Plus |
BS09342.5prime Sequence
825 bp (824 high quality bases) assembled on 2006-01-29
> BS09342.5prime
GAAGTTATCAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCC
ATTGCAGCGCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCG
GGGACAACTTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTG
TGGCAGTCGCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGC
GTTCCTCCTCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGT
TCATCACGCGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGC
AAGCCGCTGCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACA
AGGTACGCGAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATG
GTGATTGACGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTT
TGAGAAACTCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAG
AAGTGGATGGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCT
CATACCCCAACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGC
TCCACGCTCATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCT
CCGCTTCGCCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGAT
CGCTACGACCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCG
CAACAGGAGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCAT
CGCGCTATTAAAAGCTTTCTAGACC
BS09342.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10128-PG | 795 | tra2-RG | 1..795 | 17..811 | 3850 | 99.3 | Plus |
CG10128-PA | 795 | tra2-RA | 1..795 | 17..811 | 3850 | 99.3 | Plus |
CG10128-PF | 795 | tra2-RF | 1..795 | 17..811 | 3850 | 99.3 | Plus |
CG10128-PC | 681 | tra2-RC | 3..681 | 133..811 | 3270 | 99.2 | Plus |
CG10128-PD | 681 | tra2-RD | 3..681 | 133..811 | 3270 | 99.2 | Plus |
CG10128-PE | 540 | tra2-RE | 1..540 | 272..811 | 2600 | 99.2 | Plus |
CG10128-PB | 411 | tra2-RB | 1..400 | 17..416 | 1925 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-RF | 1381 | CG10128-RF | 171..966 | 17..812 | 3905 | 99.4 | Plus |
tra2-RA | 1376 | CG10128-RA | 166..961 | 17..812 | 3905 | 99.4 | Plus |
tra2-RG | 1391 | CG10128-RG | 181..976 | 17..812 | 3905 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14602502..14602880 | 790..412 | 1850 | 99.2 | Minus |
2R | 25286936 | 2R | 14603347..14603503 | 287..131 | 770 | 99.4 | Minus |
2R | 25286936 | 2R | 14603161..14603289 | 415..287 | 615 | 98.4 | Minus |
2R | 25286936 | 2R | 14603982..14604099 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:11:47 has no hits.
BS09342.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:39 Download gff for
BS09342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10128-PF | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:15 Download gff for
BS09342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10128-PG | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:11:11 Download gff for
BS09342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 176..982 | 10..820 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:14 Download gff for
BS09342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 176..982 | 10..820 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:14 Download gff for
BS09342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14603984..14604104 | 10..132 | 97 | | Minus |
2R | 14602504..14602876 | 416..788 | 99 | <- | Minus |
2R | 14603161..14603289 | 287..415 | 98 | <- | Minus |
2R | 14603348..14603501 | 133..286 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:11:11 Download gff for
BS09342.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10490009..10490381 | 416..788 | 99 | <- | Minus |
arm_2R | 10490666..10490794 | 287..415 | 98 | <- | Minus |
arm_2R | 10490853..10491006 | 133..286 | 99 | <- | Minus |
arm_2R | 10491489..10491609 | 10..132 | 97 | | Minus |
BS09342.complete Sequence
827 bp (827 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636401
> BS09342.complete
GAAGTTATCAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCC
ATTGCAGCGCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCG
GGGACAACTTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTG
TGGCAGTCGCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGC
GTTCCTCCTCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGT
TCATCACGCGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGC
AAGCCGCTGCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACA
AGGTACGCGAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATG
GTGATTGACGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTT
TGAGAAACTCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAG
AAGTGGATGGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCT
CATACCCCAACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGC
TCCACGCTCATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCT
CCGCTTCGCCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGAT
CGCTACGACCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCG
CAACAGGAGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCAT
CGCGCTATTAAAAGCTTTCTAGACCAT
BS09342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-RF | 795 | CG10128-PF | 1..795 | 17..811 | 3900 | 99.4 | Plus |
tra2-RA | 795 | CG10128-PA | 1..795 | 17..811 | 3900 | 99.4 | Plus |
tra2-RG | 795 | CG10128-PG | 1..795 | 17..811 | 3900 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-RF | 1381 | CG10128-RF | 171..966 | 17..812 | 3905 | 99.4 | Plus |
tra2-RA | 1376 | CG10128-RA | 166..961 | 17..812 | 3905 | 99.4 | Plus |
tra2-RG | 1391 | CG10128-RG | 181..976 | 17..812 | 3905 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14602502..14602880 | 790..412 | 1850 | 99.2 | Minus |
2R | 25286936 | 2R | 14603347..14603503 | 287..131 | 770 | 99.4 | Minus |
2R | 25286936 | 2R | 14603161..14603289 | 415..287 | 615 | 98.4 | Minus |
2R | 25286936 | 2R | 14603982..14604099 | 134..17 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:07:55 has no hits.
BS09342.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:33 Download gff for
BS09342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RF | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:59 Download gff for
BS09342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RA | 176..982 | 10..820 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:03 Download gff for
BS09342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 181..973 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:33 Download gff for
BS09342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RA | 176..982 | 10..820 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:52 Download gff for
BS09342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tra2-RG | 181..973 | 17..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:52 Download gff for
BS09342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14602422..14602442 | 789..809 | 100 | <- | Minus |
2R | 14602504..14602876 | 416..788 | 99 | <- | Minus |
2R | 14603161..14603289 | 287..415 | 98 | <- | Minus |
2R | 14603348..14603501 | 133..286 | 99 | <- | Minus |
2R | 14603984..14604099 | 17..132 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:03 Download gff for
BS09342.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10491489..10491604 | 17..132 | 100 | | Minus |
arm_2R | 10489927..10489947 | 789..809 | 100 | <- | Minus |
arm_2R | 10490009..10490381 | 416..788 | 99 | <- | Minus |
arm_2R | 10490666..10490794 | 287..415 | 98 | <- | Minus |
arm_2R | 10490853..10491006 | 133..286 | 99 | <- | Minus |
BS09342.pep Sequence
Translation from 16 to 810
> BS09342.pep
MDREPLSSGRLHCSARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRH
QRSSSRRRSRSRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIG
VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSD
ARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFS
PRRGRRVYHDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYS
RSRSPQLRRTSSRY*
BS09342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tra2-PF | 264 | CG10128-PF | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PA | 264 | CG10128-PA | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PG | 264 | CG10128-PG | 1..264 | 1..264 | 1398 | 100 | Plus |
tra2-PD | 226 | CG10128-PD | 2..226 | 40..264 | 1196 | 100 | Plus |
tra2-PC | 226 | CG10128-PC | 2..226 | 40..264 | 1196 | 100 | Plus |