Clone BS09342 Report

Search the DGRC for BS09342

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:42
Vector:pDNR-Dual
Associated Gene/Transcripttra2-RA
Protein status:BS09342.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09342.3prime Sequence

825 bp (824 high quality bases) assembled on 2006-01-29

> BS09342.3prime
ATGGTCTAGAAAGCTTTTAATAGCGCGATGAAGTTCGACGTAGTTGCGGA
GAGCGTGAACGGCTGTAGCTCCTGTTGCGAGTGTAGCGGTTGCGACTAGG
GCTCCTGCGGAGATTACGGTCGTAGCGATCGTTGCGGTAATCATAGCGAT
CACGATAGTTGTCATAGGGCGAAGCGGAGCGATCGTGATACACACGGCGT
CCTCTACGCGGTGAAAATGAGCGTGGAGCTTTTCCACGCGGCTGACGACC
CAAATACACACCCGGAGTTGGGGTATGAGCCCGTTGGGTTATAGAGAAAT
CGACGCGAATACGGCGACCATCCACTTCTATTCCGGAGCAGCTGTCCTTA
GCCGCGCGGGCATCGCTGAGTTTCTCAAAATAAATGAAACAAAAGCCCCG
GGAACGCTGTGTTTGTGCGTCAATCACCATCTGGATGCGTTCGATGGGTC
CGTACTTGTTGAACAGCTCGCGTACCTTGTGCTGCGAGGTATTTGTGTTC
AGTCCGAAGACTCCTATGCAGCGGCTTGCTTGTGGATGTTCGCGAGACTT
GTGCATTCGTTCCCGATCGCGTGATGAACGTCCGGAGCGATGACGCGGCT
CCGGTGGCGGCGACTCCGAGGAGGAACGCGAACGGGAGCGTCGGCGAGAG
GAGGACCGCTGGTGCCGGCGACTGCCACAGTAATCGTAGTCAGACCTGCG
GTCCTTGTGTCCGGATGAAGTTGTCCCCGCTGACGATGATGACGCCGATC
GCTTGTGTTTATATCTGGCGCTGCAATGGAGACGCCCGCTACTGAGTGGC
TCCCGATCCATGTCGACTGATAACT

BS09342.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10128-PG 795 tra2-RG 1..795 811..17 3850 99.3 Minus
CG10128-PA 795 tra2-RA 1..795 811..17 3850 99.3 Minus
CG10128-PF 795 tra2-RF 1..795 811..17 3850 99.3 Minus
CG10128-PC 681 tra2-RC 3..681 695..17 3270 99.2 Minus
CG10128-PD 681 tra2-RD 3..681 695..17 3270 99.2 Minus
CG10128-PE 540 tra2-RE 1..540 556..17 2600 99.2 Minus
CG10128-PB 411 tra2-RB 1..400 811..412 1925 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-RF 1381 CG10128-RF 171..966 811..16 3905 99.4 Minus
tra2-RA 1376 CG10128-RA 166..961 811..16 3905 99.4 Minus
tra2-RG 1391 CG10128-RG 181..976 811..16 3905 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14602502..14602880 38..416 1850 99.2 Plus
2R 25286936 2R 14603347..14603503 541..697 770 99.4 Plus
2R 25286936 2R 14603161..14603289 413..541 615 98.4 Plus
2R 25286936 2R 14603982..14604099 694..811 590 100 Plus
Blast to na_te.dros performed on 2015-02-08 13:23:18 has no hits.

BS09342.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:38 Download gff for BS09342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10128-PF 1..795 17..811 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:14 Download gff for BS09342.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10128-PG 1..795 17..811 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:32 Download gff for BS09342.3prime
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 176..982 8..818 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:27:57 Download gff for BS09342.3prime
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 176..982 8..818 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:27:57 Download gff for BS09342.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14602504..14602876 40..412 99 <- Plus
2R 14603161..14603289 413..541 98 <- Plus
2R 14603348..14603501 542..695 99 <- Plus
2R 14603984..14604104 696..818 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:32 Download gff for BS09342.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10490853..10491006 542..695 99 <- Plus
arm_2R 10490009..10490381 40..412 99 <- Plus
arm_2R 10490666..10490794 413..541 98 <- Plus
arm_2R 10491489..10491609 696..818 97   Plus

BS09342.5prime Sequence

825 bp (824 high quality bases) assembled on 2006-01-29

> BS09342.5prime
GAAGTTATCAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCC
ATTGCAGCGCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCG
GGGACAACTTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTG
TGGCAGTCGCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGC
GTTCCTCCTCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGT
TCATCACGCGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGC
AAGCCGCTGCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACA
AGGTACGCGAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATG
GTGATTGACGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTT
TGAGAAACTCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAG
AAGTGGATGGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCT
CATACCCCAACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGC
TCCACGCTCATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCT
CCGCTTCGCCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGAT
CGCTACGACCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCG
CAACAGGAGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCAT
CGCGCTATTAAAAGCTTTCTAGACC

BS09342.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10128-PG 795 tra2-RG 1..795 17..811 3850 99.3 Plus
CG10128-PA 795 tra2-RA 1..795 17..811 3850 99.3 Plus
CG10128-PF 795 tra2-RF 1..795 17..811 3850 99.3 Plus
CG10128-PC 681 tra2-RC 3..681 133..811 3270 99.2 Plus
CG10128-PD 681 tra2-RD 3..681 133..811 3270 99.2 Plus
CG10128-PE 540 tra2-RE 1..540 272..811 2600 99.2 Plus
CG10128-PB 411 tra2-RB 1..400 17..416 1925 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-RF 1381 CG10128-RF 171..966 17..812 3905 99.4 Plus
tra2-RA 1376 CG10128-RA 166..961 17..812 3905 99.4 Plus
tra2-RG 1391 CG10128-RG 181..976 17..812 3905 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14602502..14602880 790..412 1850 99.2 Minus
2R 25286936 2R 14603347..14603503 287..131 770 99.4 Minus
2R 25286936 2R 14603161..14603289 415..287 615 98.4 Minus
2R 25286936 2R 14603982..14604099 134..17 590 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:11:47 has no hits.

BS09342.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:39 Download gff for BS09342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10128-PF 1..795 17..811 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:15 Download gff for BS09342.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10128-PG 1..795 17..811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:11:11 Download gff for BS09342.5prime
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 176..982 10..820 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:14 Download gff for BS09342.5prime
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 176..982 10..820 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:14 Download gff for BS09342.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14603984..14604104 10..132 97   Minus
2R 14602504..14602876 416..788 99 <- Minus
2R 14603161..14603289 287..415 98 <- Minus
2R 14603348..14603501 133..286 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:11:11 Download gff for BS09342.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10490009..10490381 416..788 99 <- Minus
arm_2R 10490666..10490794 287..415 98 <- Minus
arm_2R 10490853..10491006 133..286 99 <- Minus
arm_2R 10491489..10491609 10..132 97   Minus

BS09342.complete Sequence

827 bp (827 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636401

> BS09342.complete
GAAGTTATCAGTCGACATGGATCGGGAGCCACTCAGTAGCGGGCGTCTCC
ATTGCAGCGCCAGATATAAACACAAGCGATCGGCGTCATCATCGTCAGCG
GGGACAACTTCATCCGGACACAAGGACCGCAGGTCTGACTACGATTACTG
TGGCAGTCGCCGGCACCAGCGGTCCTCCTCTCGCCGACGCTCCCGTTCGC
GTTCCTCCTCGGAGTCGCCGCCACCGGAGCCGCGTCATCGCTCCGGACGT
TCATCACGCGATCGGGAACGAATGCACAAGTCTCGCGAACATCCACAAGC
AAGCCGCTGCATAGGAGTCTTCGGACTGAACACAAATACCTCGCAGCACA
AGGTACGCGAGCTGTTCAACAAGTACGGACCCATCGAACGCATCCAGATG
GTGATTGACGCACAAACACAGCGTTCCCGGGGCTTTTGTTTCATTTATTT
TGAGAAACTCAGCGATGCCCGCGCGGCTAAGGACAGCTGCTCCGGAATAG
AAGTGGATGGTCGCCGTATTCGCGTCGATTTCTCTATAACCCAACGGGCT
CATACCCCAACTCCGGGTGTGTATTTGGGTCGTCAGCCGCGTGGAAAAGC
TCCACGCTCATTTTCACCGCGTAGAGGACGCCGTGTGTATCACGATCGCT
CCGCTTCGCCCTATGACAACTATCGTGATCGCTATGATTACCGCAACGAT
CGCTACGACCGTAATCTCCGCAGGAGCCCTAGTCGCAACCGCTACACTCG
CAACAGGAGCTACAGCCGTTCACGCTCTCCGCAACTACGTCGAACTTCAT
CGCGCTATTAAAAGCTTTCTAGACCAT

BS09342.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-RF 795 CG10128-PF 1..795 17..811 3900 99.4 Plus
tra2-RA 795 CG10128-PA 1..795 17..811 3900 99.4 Plus
tra2-RG 795 CG10128-PG 1..795 17..811 3900 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-RF 1381 CG10128-RF 171..966 17..812 3905 99.4 Plus
tra2-RA 1376 CG10128-RA 166..961 17..812 3905 99.4 Plus
tra2-RG 1391 CG10128-RG 181..976 17..812 3905 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14602502..14602880 790..412 1850 99.2 Minus
2R 25286936 2R 14603347..14603503 287..131 770 99.4 Minus
2R 25286936 2R 14603161..14603289 415..287 615 98.4 Minus
2R 25286936 2R 14603982..14604099 134..17 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:07:55 has no hits.

BS09342.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:33 Download gff for BS09342.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RF 1..795 17..811 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:59 Download gff for BS09342.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RA 176..982 10..820 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:03 Download gff for BS09342.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 181..973 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:33 Download gff for BS09342.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RA 176..982 10..820 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:52 Download gff for BS09342.complete
Subject Subject Range Query Range Percent Splice Strand
tra2-RG 181..973 17..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:52 Download gff for BS09342.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14602422..14602442 789..809 100 <- Minus
2R 14602504..14602876 416..788 99 <- Minus
2R 14603161..14603289 287..415 98 <- Minus
2R 14603348..14603501 133..286 99 <- Minus
2R 14603984..14604099 17..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:03 Download gff for BS09342.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10491489..10491604 17..132 100   Minus
arm_2R 10489927..10489947 789..809 100 <- Minus
arm_2R 10490009..10490381 416..788 99 <- Minus
arm_2R 10490666..10490794 287..415 98 <- Minus
arm_2R 10490853..10491006 133..286 99 <- Minus

BS09342.pep Sequence

Translation from 16 to 810

> BS09342.pep
MDREPLSSGRLHCSARYKHKRSASSSSAGTTSSGHKDRRSDYDYCGSRRH
QRSSSRRRSRSRSSSESPPPEPRHRSGRSSRDRERMHKSREHPQASRCIG
VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSD
ARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVYLGRQPRGKAPRSFS
PRRGRRVYHDRSASPYDNYRDRYDYRNDRYDRNLRRSPSRNRYTRNRSYS
RSRSPQLRRTSSRY*

BS09342.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
tra2-PF 264 CG10128-PF 1..264 1..264 1398 100 Plus
tra2-PA 264 CG10128-PA 1..264 1..264 1398 100 Plus
tra2-PG 264 CG10128-PG 1..264 1..264 1398 100 Plus
tra2-PD 226 CG10128-PD 2..226 40..264 1196 100 Plus
tra2-PC 226 CG10128-PC 2..226 40..264 1196 100 Plus