Clone BS09345 Report

Search the DGRC for BS09345

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS09345.pep: validated not full length
Sequenced Size:16

Clone Sequence Records

BS09345.3prime Sequence

971 bp (881 high quality bases) assembled on 2006-01-29

> BS09345.3prime
ATGGTCTAGAAAGCTTTCATCCGAATATCTTGTCGAAGCAGGTGTGGCAG
TATGGCTTGTCCTTTTGCTCCTTGAAAGTGCCCTTATTCAACTGCTTCAG
GCAGAAGGCGCAGACGAAGTGTTCCGGGTGGAATTTCTTGAACATGGCCG
TGATGCAGCGTCCGGTGATGGGTTTGGAGCACCCGGCGCACAGGGATCCT
CGCTTGGCATGGTAGTGCGTCTCGCAGTACGGCAGTCCCTCGTGATCAAA
GAAGGATCCTCCTTGGAAGGGCTGTCGGCAGTCCCTGCAGACGAAGCAAT
CCGGATGCCACTGCGAGTTCAGCGCCGAGATGTAGTTCTCCATAATGGCG
CGGTTGCAGCCATTGCACTTCGGGGCAAACATCTCGAAGTAGTCGTTGCG
ACAGTACGGCTTGCCGTCACGCTCATGGAATCCCTCCTCGCCGAACTGCT
GGCCGCATTGGGCGCAGAAGAAGTGCTCCGTGTGCCAGGTCTTGTCCAGC
GCCGTTACGCACTTGTCCAGAATGGCGCCGTTGCAGTAGGCGCAGCGCGG
GCTGAACAGATTGTGGTAGTCCGGCTCGCAGTACGGGAAGCCGTCGCGCT
CGAAGAAATTGCGGGTGCCCAACTCCTGGCTGCAGTGGTTGCACGTGAAG
TGCTCCGGATGCCATGTCTTGCCCAGGGCTGTGATCACCTGGCCCACAAT
GGGCTTCTCGCAGGCATTGCAGCAGCCCTTCTGCACGGTATTGACTCCTT
GGCGACTCATATTGGCCTGTAGATTGCCTAGCATAGAATCCAACTGATCC
TCGCGACTGTCCTCGACGATGGTCGTCTCCTCGATCGTCTGGGTGAGATG
TGCCTGCTGGCTACCCTTGTTTGGTCTGGCGTAGTCGGTTACCGTCTGGT
GCTGCACTGTCGACGAGTGCTGTTGCGGATGACTGCCGTTTTCGATGCCG
TTTGTCCGTTGCTAACCCTTG

BS09345.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31794-PA 1746 Pax-RA 808..1746 955..17 4620 99.6 Minus
CG31794-PB 1671 Pax-RB 733..1671 955..17 4620 99.6 Minus
CG31794-PC 1674 Pax-RC 736..1674 955..17 4620 99.6 Minus
CG31794-PF 1746 Pax-RF 808..1746 955..17 4620 99.6 Minus
CG31794-PG 1746 Pax-RG 808..1746 955..17 4620 99.6 Minus
CG31794-PD 594 Pax-RD 1..503 784..282 2490 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
Pax-RK 2255 CG31794-RK 951..1903 967..16 4695 99.6 Minus
Pax-RJ 2253 CG31794-RJ 977..1929 967..16 4695 99.6 Minus
Pax-RH 2097 CG31794-RH 821..1773 967..16 4695 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19403998..19404683 283..967 3350 99.6 Plus
2L 23513712 2L 19401105..19401373 16..284 1330 99.6 Plus
2L 23513712 2L 21199830..21199885 632..687 190 89.3 Plus
2L 23513712 2L 21202145..21202200 632..687 190 89.3 Plus
Blast to na_te.dros performed on 2015-02-12 03:58:57 has no hits.

BS09345.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:42 Download gff for BS09345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31794-PF 792..1746 17..971 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:19 Download gff for BS09345.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31794-PG 792..1746 17..971 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:29 Download gff for BS09345.3prime
Subject Subject Range Query Range Percent Splice Strand
Pax-RH 818..1780 9..971 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:27 Download gff for BS09345.3prime
Subject Subject Range Query Range Percent Splice Strand
Pax-RH 818..1780 9..971 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:27 Download gff for BS09345.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19401098..19401372 9..283 98 <- Plus
2L 19403999..19404685 284..971 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:29 Download gff for BS09345.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19401098..19401372 9..283 98 <- Plus
arm_2L 19403999..19404685 284..971 99   Plus

BS09345.5prime Sequence

928 bp (762 high quality bases) assembled on 2006-01-29

> BS09345.5prime
GAAGTTATCAGTCGACATGGACGATTTGGATGCTCTATTAGCCGACCTGC
AAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACT
GTCCAGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACAC
TCCAGGTTATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAG
AGCACTACAGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAAT
GGCTCCTCCACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCA
GGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGG
ATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAA
TACAATACGATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGA
CAGCCTGCTGAATGAACTGGACAATGCTCACATCTATGCTGTTCCTAACG
GATCTGCGCATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTT
CGGGAAACGAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCAC
TGTCGAGGAGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATG
CTGTTCCGGGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAG
GAACTGGATGATCTGATGGCTTCACTTTCCGACTTCAAGGTTAGCAACGG
AACAAACGGCATCGGAAACGGCAGTCATCCGCAACAGCACTCGTCGACAG
TGCAGCACCAGACGGTAACCGACTACGCCAGACCAAACAAGGGTAGCCAG
CAGGCACATCTCACCCAGACGATCGAGGAGACGACCATCGTCGAGGACAG
TCGCGAGGATCAGTTGGATTCTATGCTA

BS09345.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31794-PC 1674 Pax-RC 1..912 17..928 4510 99.7 Plus
CG31794-PA 1746 Pax-RA 83..984 27..928 4460 99.7 Plus
CG31794-PB 1671 Pax-RB 10..909 29..928 4450 99.7 Plus
CG31794-PF 1746 Pax-RF 86..984 30..928 4445 99.7 Plus
CG31794-PG 1746 Pax-RG 86..984 30..928 4445 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Pax-RC 2377 CG31794-RC 374..1290 12..928 4540 99.7 Plus
Pax-RK 2255 CG31794-RK 239..1140 27..928 4480 99.8 Plus
Pax-RJ 2253 CG31794-RJ 265..1166 27..928 4480 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19404494..19404688 928..734 960 99.5 Minus
2L 23513712 2L 19410480..19410648 193..25 830 99.4 Minus
2L 23513712 2L 19410248..19410414 359..193 820 99.4 Minus
2L 23513712 2L 19409402..19409552 741..591 755 100 Minus
2L 23513712 2L 19409769..19409910 501..360 695 99.3 Minus
2L 23513712 2L 19409612..19409704 593..501 465 100 Minus
Blast to na_te.dros performed 2015-02-11 17:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6814 22..136 124 62.2 Plus

BS09345.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:43 Download gff for BS09345.5prime
Subject Subject Range Query Range Percent Splice Strand
Pax-PC 1..911 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:21 Download gff for BS09345.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31794-PC 1..911 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:53 Download gff for BS09345.5prime
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 372..1289 9..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:12 Download gff for BS09345.5prime
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 372..1289 9..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:12 Download gff for BS09345.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19404495..19404682 740..927 100 <- Minus
2L 19409404..19409549 594..739 100 <- Minus
2L 19409612..19409703 502..593 100 <- Minus
2L 19409769..19409910 360..501 99 <- Minus
2L 19410248..19410413 194..359 99 <- Minus
2L 19410480..19410643 30..193 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:53 Download gff for BS09345.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19404495..19404682 740..927 100 <- Minus
arm_2L 19409404..19409549 594..739 100 <- Minus
arm_2L 19409612..19409703 502..593 100 <- Minus
arm_2L 19409769..19409910 360..501 99 <- Minus
arm_2L 19410248..19410413 194..359 99 <- Minus
arm_2L 19410480..19410643 30..193 100 <- Minus

BS09345.complete Sequence

1706 bp assembled on 2007-10-17

> BS09345.complete
GAAGTTATCAGTCGACATGGACGATTTGGATGCTCTATTAGCCGACCTGC
AAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACT
GTCCAGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACAC
TCCAGGTTATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAG
AGCACTACAGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAAT
GGCTCCTCCACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCA
GGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGG
ATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAA
TACAATACGATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGA
CAGCCTGCTGAATGAACTGGACAATGCTCACATCTATGCTGTTCCTAACG
GATCTGCGCATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTT
CGGGAAACGAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCAC
TGTCGAGGAGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATG
CTGTTCCGGGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAG
GAACTGGATGATCTGATGGCTTCACTTTCCGACTTCAAGGTTAGCAACGG
AACAAACGGCATCGGAAACGGCAGTCATCCGCAACAGCACTCGTCGACAG
TGCAGCACCAGACGGTAACCGACTACGCCAGACCAAACAAGGGTAGCCAG
CAGGCACATCTCACCCAGACGATCGAGGAGACGACCATCGTCGAGGACAG
TCGCGAGGATCAGTTGGATTCTATGCTAGGCAATCTACAGGCCAATATGA
GTCGCCAAGGAGTCAATACCGTGCAGAAGGGCTGCTGCAATGCCTGCGAG
AAGCCCATTGTGGGCCAGGTGATCACAGCCCTGGGCAAGACATGGCATCC
GGAGCACTTCACGTGCAACCACTGCAGCCAGGAGTTGGGCACCCGCAATT
TCTTCGAGCGCGACGGCTTCCCGTACTGCGAGCCGGACTACCACAATCTG
TTCAGCCCGCGCTGCGCCTACTGCAACGGCGCCATTCTGGACAAGTGCGT
AACGGCGCTGGACAAGACCTGGCACACGGAGCACTTCTTCTGCGCCCAAT
GCGGCCAGCAGTTCGGCGAGGAGGGATTCCATGAGCGTGACGGCAAGCCG
TACTGTCGCAACGACTACTTCGAGATGTTTGCCCCGAAGTGCAATGGCTG
CAACCGCGCCATTATGGAGAACTACATCTCGGCGCTGAACTCGCAGTGGC
ATCCGGATTGCTTCGTCTGCAGGGACTGCCGACAGCCCTTCCAAGGAGGA
TCCTTCTTTGATCACGAGGGACTGCCGTACTGCGAGACGCACTACCATGC
CAAGCGAGGATCCCTGTGCGCCGGGTGCTCCAAACCCATCACCGGACGCT
GCATCACGGCCATGTTCAAGAAATTCCACCCGGAACACTTCGTCTGCGCC
TTCTGCCTGAAGCAGTTGAATAAGGGCACTTTCAAGGAGCAAAAGGACAA
GCCATACTGCCACACCTGCTTCGACAAGATATTCGGATGAAAGCTTTCTA
GACCAT

BS09345.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Pax-RC 1674 CG31794-PC 1..1674 17..1690 8310 99.8 Plus
Pax-RK 1746 CG31794-PK 83..1746 27..1690 8260 99.8 Plus
Pax-RJ 1746 CG31794-PJ 83..1746 27..1690 8260 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pax-RC 2377 CG31794-RC 374..2053 12..1691 8325 99.7 Plus
Pax-RK 2255 CG31794-RK 239..1903 27..1691 8265 99.8 Plus
Pax-RJ 2253 CG31794-RJ 265..1929 27..1691 8265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19403998..19404688 1424..734 3425 99.7 Minus
2L 23513712 2L 19401105..19401373 1691..1423 1330 99.6 Minus
2L 23513712 2L 19410480..19410648 193..25 830 99.4 Minus
2L 23513712 2L 19410248..19410414 359..193 820 99.4 Minus
2L 23513712 2L 19409402..19409552 741..591 755 100 Minus
2L 23513712 2L 19409769..19409910 501..360 695 99.3 Minus
2L 23513712 2L 19409612..19409704 593..501 465 100 Minus
2L 23513712 2L 21199830..21199885 1075..1020 190 89.3 Minus
2L 23513712 2L 21202145..21202200 1075..1020 190 89.3 Minus
Blast to na_te.dros performed 2014-11-28 05:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6814 22..136 124 62.2 Plus

BS09345.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:05 Download gff for BS09345.complete
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 1..1674 17..1690 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:15 Download gff for BS09345.complete
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 207..1879 17..1689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:14 Download gff for BS09345.complete
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 379..2051 17..1689 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:54 Download gff for BS09345.complete
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 207..1879 17..1689 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:01 Download gff for BS09345.complete
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 379..2051 17..1689 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:01 Download gff for BS09345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19401107..19401372 1424..1689 99 <- Minus
2L 19403999..19404682 740..1423 99 <- Minus
2L 19409404..19409549 594..739 100 <- Minus
2L 19409612..19409703 502..593 100 <- Minus
2L 19409769..19409910 360..501 99 <- Minus
2L 19410248..19410413 194..359 99 <- Minus
2L 19410480..19410643 30..193 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:14 Download gff for BS09345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19401107..19401372 1424..1689 99 <- Minus
arm_2L 19403999..19404682 740..1423 99 <- Minus
arm_2L 19409404..19409549 594..739 100 <- Minus
arm_2L 19409612..19409703 502..593 100 <- Minus
arm_2L 19409769..19409910 360..501 99 <- Minus
arm_2L 19410248..19410413 194..359 99 <- Minus
arm_2L 19410480..19410643 30..193 100 <- Minus

BS09345.pep Sequence

Translation from 16 to 1689

> BS09345.pep
MDDLDALLADLQNSVPGQPQQPQPQYGTVQPKHQALQQQQFVDNTPGYGS
LRGKAQPQVYQEHYSVETRSPTAGHDFNGSSTTPGYANQGSLPRQAAGAS
TGLSELDSLLQDLQKIDVPVNYSTPVSKYNTMNSYATVEERPSVDSLLNE
LDNAHIYAVPNGSAHKSPTPGRHVTITVRETKTEKLTGPDGPVGTVEEQI
VQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGIG
NGSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQL
DSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTC
NHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDK
TWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM
ENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSL
CAGCSKPITGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHT
CFDKIFG*

BS09345.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Pax-PC 557 CG31794-PC 1..557 1..557 3069 99.8 Plus
Pax-PH 563 CG31794-PH 8..563 2..557 3059 99.6 Plus
Pax-PK 581 CG31794-PK 28..581 4..557 3052 99.8 Plus
Pax-PJ 581 CG31794-PJ 28..581 4..557 3052 99.8 Plus
Pax-PA 581 CG31794-PA 28..581 4..557 3052 99.8 Plus