Clone Sequence Records
BS09345.3prime Sequence
971 bp (881 high quality bases) assembled on 2006-01-29
> BS09345.3prime
ATGGTCTAGAAAGCTTTCATCCGAATATCTTGTCGAAGCAGGTGTGGCAG
TATGGCTTGTCCTTTTGCTCCTTGAAAGTGCCCTTATTCAACTGCTTCAG
GCAGAAGGCGCAGACGAAGTGTTCCGGGTGGAATTTCTTGAACATGGCCG
TGATGCAGCGTCCGGTGATGGGTTTGGAGCACCCGGCGCACAGGGATCCT
CGCTTGGCATGGTAGTGCGTCTCGCAGTACGGCAGTCCCTCGTGATCAAA
GAAGGATCCTCCTTGGAAGGGCTGTCGGCAGTCCCTGCAGACGAAGCAAT
CCGGATGCCACTGCGAGTTCAGCGCCGAGATGTAGTTCTCCATAATGGCG
CGGTTGCAGCCATTGCACTTCGGGGCAAACATCTCGAAGTAGTCGTTGCG
ACAGTACGGCTTGCCGTCACGCTCATGGAATCCCTCCTCGCCGAACTGCT
GGCCGCATTGGGCGCAGAAGAAGTGCTCCGTGTGCCAGGTCTTGTCCAGC
GCCGTTACGCACTTGTCCAGAATGGCGCCGTTGCAGTAGGCGCAGCGCGG
GCTGAACAGATTGTGGTAGTCCGGCTCGCAGTACGGGAAGCCGTCGCGCT
CGAAGAAATTGCGGGTGCCCAACTCCTGGCTGCAGTGGTTGCACGTGAAG
TGCTCCGGATGCCATGTCTTGCCCAGGGCTGTGATCACCTGGCCCACAAT
GGGCTTCTCGCAGGCATTGCAGCAGCCCTTCTGCACGGTATTGACTCCTT
GGCGACTCATATTGGCCTGTAGATTGCCTAGCATAGAATCCAACTGATCC
TCGCGACTGTCCTCGACGATGGTCGTCTCCTCGATCGTCTGGGTGAGATG
TGCCTGCTGGCTACCCTTGTTTGGTCTGGCGTAGTCGGTTACCGTCTGGT
GCTGCACTGTCGACGAGTGCTGTTGCGGATGACTGCCGTTTTCGATGCCG
TTTGTCCGTTGCTAACCCTTG
BS09345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31794-PA | 1746 | Pax-RA | 808..1746 | 955..17 | 4620 | 99.6 | Minus |
CG31794-PB | 1671 | Pax-RB | 733..1671 | 955..17 | 4620 | 99.6 | Minus |
CG31794-PC | 1674 | Pax-RC | 736..1674 | 955..17 | 4620 | 99.6 | Minus |
CG31794-PF | 1746 | Pax-RF | 808..1746 | 955..17 | 4620 | 99.6 | Minus |
CG31794-PG | 1746 | Pax-RG | 808..1746 | 955..17 | 4620 | 99.6 | Minus |
CG31794-PD | 594 | Pax-RD | 1..503 | 784..282 | 2490 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-RK | 2255 | CG31794-RK | 951..1903 | 967..16 | 4695 | 99.6 | Minus |
Pax-RJ | 2253 | CG31794-RJ | 977..1929 | 967..16 | 4695 | 99.6 | Minus |
Pax-RH | 2097 | CG31794-RH | 821..1773 | 967..16 | 4695 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:58:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19403998..19404683 | 283..967 | 3350 | 99.6 | Plus |
2L | 23513712 | 2L | 19401105..19401373 | 16..284 | 1330 | 99.6 | Plus |
2L | 23513712 | 2L | 21199830..21199885 | 632..687 | 190 | 89.3 | Plus |
2L | 23513712 | 2L | 21202145..21202200 | 632..687 | 190 | 89.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:58:57 has no hits.
BS09345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:42 Download gff for
BS09345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31794-PF | 792..1746 | 17..971 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:19 Download gff for
BS09345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31794-PG | 792..1746 | 17..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:58:29 Download gff for
BS09345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RH | 818..1780 | 9..971 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:27 Download gff for
BS09345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RH | 818..1780 | 9..971 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:27 Download gff for
BS09345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19401098..19401372 | 9..283 | 98 | <- | Plus |
2L | 19403999..19404685 | 284..971 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:58:29 Download gff for
BS09345.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19401098..19401372 | 9..283 | 98 | <- | Plus |
arm_2L | 19403999..19404685 | 284..971 | 99 | | Plus |
BS09345.5prime Sequence
928 bp (762 high quality bases) assembled on 2006-01-29
> BS09345.5prime
GAAGTTATCAGTCGACATGGACGATTTGGATGCTCTATTAGCCGACCTGC
AAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACT
GTCCAGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACAC
TCCAGGTTATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAG
AGCACTACAGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAAT
GGCTCCTCCACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCA
GGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGG
ATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAA
TACAATACGATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGA
CAGCCTGCTGAATGAACTGGACAATGCTCACATCTATGCTGTTCCTAACG
GATCTGCGCATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTT
CGGGAAACGAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCAC
TGTCGAGGAGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATG
CTGTTCCGGGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAG
GAACTGGATGATCTGATGGCTTCACTTTCCGACTTCAAGGTTAGCAACGG
AACAAACGGCATCGGAAACGGCAGTCATCCGCAACAGCACTCGTCGACAG
TGCAGCACCAGACGGTAACCGACTACGCCAGACCAAACAAGGGTAGCCAG
CAGGCACATCTCACCCAGACGATCGAGGAGACGACCATCGTCGAGGACAG
TCGCGAGGATCAGTTGGATTCTATGCTA
BS09345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31794-PC | 1674 | Pax-RC | 1..912 | 17..928 | 4510 | 99.7 | Plus |
CG31794-PA | 1746 | Pax-RA | 83..984 | 27..928 | 4460 | 99.7 | Plus |
CG31794-PB | 1671 | Pax-RB | 10..909 | 29..928 | 4450 | 99.7 | Plus |
CG31794-PF | 1746 | Pax-RF | 86..984 | 30..928 | 4445 | 99.7 | Plus |
CG31794-PG | 1746 | Pax-RG | 86..984 | 30..928 | 4445 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-RC | 2377 | CG31794-RC | 374..1290 | 12..928 | 4540 | 99.7 | Plus |
Pax-RK | 2255 | CG31794-RK | 239..1140 | 27..928 | 4480 | 99.8 | Plus |
Pax-RJ | 2253 | CG31794-RJ | 265..1166 | 27..928 | 4480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19404494..19404688 | 928..734 | 960 | 99.5 | Minus |
2L | 23513712 | 2L | 19410480..19410648 | 193..25 | 830 | 99.4 | Minus |
2L | 23513712 | 2L | 19410248..19410414 | 359..193 | 820 | 99.4 | Minus |
2L | 23513712 | 2L | 19409402..19409552 | 741..591 | 755 | 100 | Minus |
2L | 23513712 | 2L | 19409769..19409910 | 501..360 | 695 | 99.3 | Minus |
2L | 23513712 | 2L | 19409612..19409704 | 593..501 | 465 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6814 | 22..136 | 124 | 62.2 | Plus |
BS09345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:43 Download gff for
BS09345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-PC | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:21 Download gff for
BS09345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31794-PC | 1..911 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:53 Download gff for
BS09345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 372..1289 | 9..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:12 Download gff for
BS09345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 372..1289 | 9..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:12 Download gff for
BS09345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19404495..19404682 | 740..927 | 100 | <- | Minus |
2L | 19409404..19409549 | 594..739 | 100 | <- | Minus |
2L | 19409612..19409703 | 502..593 | 100 | <- | Minus |
2L | 19409769..19409910 | 360..501 | 99 | <- | Minus |
2L | 19410248..19410413 | 194..359 | 99 | <- | Minus |
2L | 19410480..19410643 | 30..193 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:53 Download gff for
BS09345.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19404495..19404682 | 740..927 | 100 | <- | Minus |
arm_2L | 19409404..19409549 | 594..739 | 100 | <- | Minus |
arm_2L | 19409612..19409703 | 502..593 | 100 | <- | Minus |
arm_2L | 19409769..19409910 | 360..501 | 99 | <- | Minus |
arm_2L | 19410248..19410413 | 194..359 | 99 | <- | Minus |
arm_2L | 19410480..19410643 | 30..193 | 100 | <- | Minus |
BS09345.complete Sequence
1706 bp assembled on 2007-10-17
> BS09345.complete
GAAGTTATCAGTCGACATGGACGATTTGGATGCTCTATTAGCCGACCTGC
AAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACT
GTCCAGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACAC
TCCAGGTTATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAG
AGCACTACAGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAAT
GGCTCCTCCACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCA
GGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGG
ATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAA
TACAATACGATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGA
CAGCCTGCTGAATGAACTGGACAATGCTCACATCTATGCTGTTCCTAACG
GATCTGCGCATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTT
CGGGAAACGAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCAC
TGTCGAGGAGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATG
CTGTTCCGGGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAG
GAACTGGATGATCTGATGGCTTCACTTTCCGACTTCAAGGTTAGCAACGG
AACAAACGGCATCGGAAACGGCAGTCATCCGCAACAGCACTCGTCGACAG
TGCAGCACCAGACGGTAACCGACTACGCCAGACCAAACAAGGGTAGCCAG
CAGGCACATCTCACCCAGACGATCGAGGAGACGACCATCGTCGAGGACAG
TCGCGAGGATCAGTTGGATTCTATGCTAGGCAATCTACAGGCCAATATGA
GTCGCCAAGGAGTCAATACCGTGCAGAAGGGCTGCTGCAATGCCTGCGAG
AAGCCCATTGTGGGCCAGGTGATCACAGCCCTGGGCAAGACATGGCATCC
GGAGCACTTCACGTGCAACCACTGCAGCCAGGAGTTGGGCACCCGCAATT
TCTTCGAGCGCGACGGCTTCCCGTACTGCGAGCCGGACTACCACAATCTG
TTCAGCCCGCGCTGCGCCTACTGCAACGGCGCCATTCTGGACAAGTGCGT
AACGGCGCTGGACAAGACCTGGCACACGGAGCACTTCTTCTGCGCCCAAT
GCGGCCAGCAGTTCGGCGAGGAGGGATTCCATGAGCGTGACGGCAAGCCG
TACTGTCGCAACGACTACTTCGAGATGTTTGCCCCGAAGTGCAATGGCTG
CAACCGCGCCATTATGGAGAACTACATCTCGGCGCTGAACTCGCAGTGGC
ATCCGGATTGCTTCGTCTGCAGGGACTGCCGACAGCCCTTCCAAGGAGGA
TCCTTCTTTGATCACGAGGGACTGCCGTACTGCGAGACGCACTACCATGC
CAAGCGAGGATCCCTGTGCGCCGGGTGCTCCAAACCCATCACCGGACGCT
GCATCACGGCCATGTTCAAGAAATTCCACCCGGAACACTTCGTCTGCGCC
TTCTGCCTGAAGCAGTTGAATAAGGGCACTTTCAAGGAGCAAAAGGACAA
GCCATACTGCCACACCTGCTTCGACAAGATATTCGGATGAAAGCTTTCTA
GACCAT
BS09345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-RC | 1674 | CG31794-PC | 1..1674 | 17..1690 | 8310 | 99.8 | Plus |
Pax-RK | 1746 | CG31794-PK | 83..1746 | 27..1690 | 8260 | 99.8 | Plus |
Pax-RJ | 1746 | CG31794-PJ | 83..1746 | 27..1690 | 8260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:37:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-RC | 2377 | CG31794-RC | 374..2053 | 12..1691 | 8325 | 99.7 | Plus |
Pax-RK | 2255 | CG31794-RK | 239..1903 | 27..1691 | 8265 | 99.8 | Plus |
Pax-RJ | 2253 | CG31794-RJ | 265..1929 | 27..1691 | 8265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19403998..19404688 | 1424..734 | 3425 | 99.7 | Minus |
2L | 23513712 | 2L | 19401105..19401373 | 1691..1423 | 1330 | 99.6 | Minus |
2L | 23513712 | 2L | 19410480..19410648 | 193..25 | 830 | 99.4 | Minus |
2L | 23513712 | 2L | 19410248..19410414 | 359..193 | 820 | 99.4 | Minus |
2L | 23513712 | 2L | 19409402..19409552 | 741..591 | 755 | 100 | Minus |
2L | 23513712 | 2L | 19409769..19409910 | 501..360 | 695 | 99.3 | Minus |
2L | 23513712 | 2L | 19409612..19409704 | 593..501 | 465 | 100 | Minus |
2L | 23513712 | 2L | 21199830..21199885 | 1075..1020 | 190 | 89.3 | Minus |
2L | 23513712 | 2L | 21202145..21202200 | 1075..1020 | 190 | 89.3 | Minus |
Blast to na_te.dros performed 2014-11-28 05:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6814 | 22..136 | 124 | 62.2 | Plus |
BS09345.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:10:05 Download gff for
BS09345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 1..1674 | 17..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:15 Download gff for
BS09345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 207..1879 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:14 Download gff for
BS09345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 379..2051 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:54 Download gff for
BS09345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 207..1879 | 17..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:15:01 Download gff for
BS09345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 379..2051 | 17..1689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:15:01 Download gff for
BS09345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19401107..19401372 | 1424..1689 | 99 | <- | Minus |
2L | 19403999..19404682 | 740..1423 | 99 | <- | Minus |
2L | 19409404..19409549 | 594..739 | 100 | <- | Minus |
2L | 19409612..19409703 | 502..593 | 100 | <- | Minus |
2L | 19409769..19409910 | 360..501 | 99 | <- | Minus |
2L | 19410248..19410413 | 194..359 | 99 | <- | Minus |
2L | 19410480..19410643 | 30..193 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:14 Download gff for
BS09345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19401107..19401372 | 1424..1689 | 99 | <- | Minus |
arm_2L | 19403999..19404682 | 740..1423 | 99 | <- | Minus |
arm_2L | 19409404..19409549 | 594..739 | 100 | <- | Minus |
arm_2L | 19409612..19409703 | 502..593 | 100 | <- | Minus |
arm_2L | 19409769..19409910 | 360..501 | 99 | <- | Minus |
arm_2L | 19410248..19410413 | 194..359 | 99 | <- | Minus |
arm_2L | 19410480..19410643 | 30..193 | 100 | <- | Minus |
BS09345.pep Sequence
Translation from 16 to 1689
> BS09345.pep
MDDLDALLADLQNSVPGQPQQPQPQYGTVQPKHQALQQQQFVDNTPGYGS
LRGKAQPQVYQEHYSVETRSPTAGHDFNGSSTTPGYANQGSLPRQAAGAS
TGLSELDSLLQDLQKIDVPVNYSTPVSKYNTMNSYATVEERPSVDSLLNE
LDNAHIYAVPNGSAHKSPTPGRHVTITVRETKTEKLTGPDGPVGTVEEQI
VQQKDSYTPNHAVPGQQVHQAYTSQATKELDDLMASLSDFKVSNGTNGIG
NGSHPQQHSSTVQHQTVTDYARPNKGSQQAHLTQTIEETTIVEDSREDQL
DSMLGNLQANMSRQGVNTVQKGCCNACEKPIVGQVITALGKTWHPEHFTC
NHCSQELGTRNFFERDGFPYCEPDYHNLFSPRCAYCNGAILDKCVTALDK
TWHTEHFFCAQCGQQFGEEGFHERDGKPYCRNDYFEMFAPKCNGCNRAIM
ENYISALNSQWHPDCFVCRDCRQPFQGGSFFDHEGLPYCETHYHAKRGSL
CAGCSKPITGRCITAMFKKFHPEHFVCAFCLKQLNKGTFKEQKDKPYCHT
CFDKIFG*
BS09345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-PC | 557 | CG31794-PC | 1..557 | 1..557 | 3069 | 99.8 | Plus |
Pax-PH | 563 | CG31794-PH | 8..563 | 2..557 | 3059 | 99.6 | Plus |
Pax-PK | 581 | CG31794-PK | 28..581 | 4..557 | 3052 | 99.8 | Plus |
Pax-PJ | 581 | CG31794-PJ | 28..581 | 4..557 | 3052 | 99.8 | Plus |
Pax-PA | 581 | CG31794-PA | 28..581 | 4..557 | 3052 | 99.8 | Plus |