Clone Sequence Records
BS09353.3prime Sequence
798 bp (755 high quality bases) assembled on 2006-01-29
> BS09353.3prime
ATGGTCTAGAAAGCTTTTAGGCGGCAATTTTTTTCTCCGCCGTGCCCGTC
CATTCCTCGCGCAAGTGGACACTACAGCCGAGGTCGCGCAACGCCGCCTT
GATGTCCTGCTCCACACTGGGGTGCTCCTTCATTGCCATATTTAGTAGAT
CCTCAACGCCGAAGGAGATCCAGGTTTCACACTGGTTCCGCGACCGTGAC
ACCATATTGCGGATGGCCCACGCTCCGTTTCGCTGGACTATCTTGTGTTT
GGGATGGGCGCGAAGAGCCTCCACGATTACTTCGGCGATGCCGGTATCGA
AAAAGGCGGCACTGTGTTCCTGCACTCGGAGTGTCAGAGTAGTCACGCAG
GCCAAAGCGGCGGCAACGATGTTTTCATTGGACTGGTGCGTCTCTAGCAA
TTGCTTTATTATAGGAGCCACGCCCTGCTGTACTATATGTGACTTCACGG
AGTCTTGGCCAGCCAGGGCACGTAGCAACTTTAAGGCCTCTCTATTTAGA
CGCACCTCATCCAAATTCGAACTCATGATCTCGAAGACGGACTTCAGTCC
ACCAGCCTCGTCGATAGCTGTACAGAGTTCCTGACGCACAGCCAGTGTTC
CAATGGTCAGCAGAAGATCAGCCAGAACATTAGGATCCTGATAGGCCGGC
AAAAGTTCCACCAAGGTGATGAGCACCTCGCCTGCTATTTGGCGGGCGTG
CTCGTGGGCGCATCCAAACTCAACGCGAATGTCATCATCCAGCACTAGGA
AGCGGAAGACGGCGGTCAGTTCACGCACCAGGCGGTCCTTCCCTTTCC
BS09353.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-PA | 1395 | CG5721-RA | 614..1395 | 798..17 | 3910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1601 | CG5721-RA | 714..1495 | 798..17 | 3910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18182541..18183322 | 17..798 | 3910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:36:53 has no hits.
BS09353.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:06:59 Download gff for
BS09353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-PA | 614..1395 | 17..798 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:42 Download gff for
BS09353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-PA | 614..1395 | 17..798 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:40 Download gff for
BS09353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 714..1499 | 13..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:00 Download gff for
BS09353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 714..1499 | 13..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:00 Download gff for
BS09353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18182537..18183322 | 13..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:40 Download gff for
BS09353.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14070042..14070827 | 13..798 | 99 | | Plus |
BS09353.5prime Sequence
928 bp (881 high quality bases) assembled on 2006-01-29
> BS09353.5prime
GAAGTTATCAGTCGTCATGGCCAAGGTTATATCGCAGGACACCTTCGACG
ATGTTGTGAAGGAGAACGTTGTGGAGTTCTCGATGACTCCTTCGGAGGCG
AAAGAAGAGACCATCAAGCAATTCGAGGCACAGGGCATCAACCTGGCCAA
CATTATCAAGGACCTGTCCGTCAATCCGCAAACCGGCCAACCTGTCATCA
ACGAAACGGTGGACAAGATCAAGGAGCACATTGGCCAAAAACTGGAGGAA
ACAACGGAGCTGCTGGAACAGCTGGCCACCTTGGATGCTGAGTGCAAAAA
GTCGCTAGCCCATAGGGTTCTAGCCGGCAAAAATGGAGCCCACGATGCCC
TGATCACCCTGTTGGAGGAGACGCTCTCTGCTGAGTCACCCAACGAATCC
GTGTTAAAAAAGTCCTTGGAAGCCATCAACAGCCTGACCCACAAGCAGCC
GGATCTGTTTGATGCCGAGGCGATGGCCGTGGTTCTCAAGTTACTGGCCC
TCAAAGTGGAGAGTGAAGAAGTCACCCTGTTGACTCTTCAATGGCTGCAG
AAGGCCTGCATCATGCATGAAATGAACCGCCAGAATATCATGAATACCTC
CGCACTCAAACTCATGAAGCCCCTTTTAGGGAAAGGGAAGGACCGCCTGG
TGCGTGAACTGACCGCCGTCTTCCGCTTCCTAGTGCTGGATGATGACATT
CGCGTTGAGTTTGGATGCGCCCACGAGCACGCCCGCCAAATAGCAGGCGA
GGTGCTCATCACCTTGGTGGAACTTTTGCCGGCCTATCAGGATCCTAATG
TTCTGGCTGATCTTCTGCTGACCATTGGAACACTGGCTGTGCGTCAGGAA
CTCTGTACAGCTATCGACGAGGCTGGTGGACTGAAGTCCGTCTTCGAGAT
CATGAGTTCGAAATTTGGATGAGGTGCG
BS09353.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-PA | 1395 | CG5721-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1601 | CG5721-RA | 100..1011 | 16..928 | 4540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18183025..18183821 | 928..131 | 3940 | 99.9 | Minus |
| 2R | 25286936 | 2R | 18183873..18183991 | 134..16 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:15:03 has no hits.
BS09353.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:00 Download gff for
BS09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-PA | 1..911 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:43 Download gff for
BS09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-PA | 1..911 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:54:10 Download gff for
BS09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 92..1011 | 7..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:56 Download gff for
BS09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 92..1011 | 7..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:56 Download gff for
BS09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18183025..18183818 | 134..928 | 99 | <- | Minus |
| 2R | 18183874..18183999 | 7..133 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:54:10 Download gff for
BS09353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14070530..14071323 | 134..928 | 99 | <- | Minus |
| arm_2R | 14071379..14071504 | 7..133 | 97 | | Minus |
BS09353.complete Sequence
1427 bp assembled on 2009-02-12
> BS09353.complete
GAAGTTATCAGTCGTCATGGCCAAGGTTATATCGCAGGACACCTTCGACG
ATGTTGTGAAGGAGAACGTTGTGGAGTTCTCGATGACTCCTTCGGAGGCG
AAAGAAGAGACCATCAAGCAATTCGAGGCACAGGGCATCAACCTGGCCAA
CATTATCAAGGACCTGTCCGTCAATCCGCAAACCGGCCAACCTGTCATCA
ACGAAACGGTGGACAAGATCAAGGAGCACATTGGCCAAAAACTGGAGGAA
ACAACGGAGCTGCTGGAACAGCTGGCCACCTTGGATGCTGAGTGCAAAAA
GTCGCTAGCCCATAGGGTTCTAGCCGGCAAAAATGGAGCCCACGATGCCC
TGATCACCCTGTTGGAGGAGACGCTCTCTGCTGAGTCACCCAACGAATCC
GTGTTAAAAAAGTCCTTGGAAGCCATCAACAGCCTGACCCACAAGCAGCC
GGATCTGTTTGATGCCGAGGCGATGGCCGTGGTTCTCAAGTTACTGGCCC
TCAAAGTGGAGAGTGAAGAAGTCACCCTGTTGACTCTTCAATGGCTGCAG
AAGGCCTGCATCATGCATGAAATGAACCGCCAGAATATCATGAATACCTC
CGCACTCAAACTCATGAAGCCCCTTTTAGGGAAAGGGAAGGACCGCCTGG
TGCGTGAACTGACCGCCGTCTTCCGCTTCCTAGTGCTGGATGATGACATT
CGCGTTGAGTTTGGATGCGCCCACGAGCACGCCCGCCAAATAGCAGGCGA
GGTGCTCATCACCTTGGTGGAACTTTTGCCGGCCTATCAGGATCCTAATG
TTCTGGCTGATCTTCTGCTGACCATTGGAACACTGGCTGTGCGTCAGGAA
CTCTGTACAGCTATCGACGAGGCTGGTGGACTGAAGTCCGTCTTCGAGAT
CATGAGTTCGAATTTGGATGAGGTGCGTCTAAATAGAGAGGCCTTAAAGT
TGCTACGTGCCCTGGCTGGCCAAGACTCCGTGAAGTCACATATAGTACAG
CAGGGCGTGGCTCCTATAATAAAGCAATTGCTAGAGACGCACCAGTCCAA
TGAAAACATCGTTGCCGCCGCTTTGGCCTGCGTGACTACTCTGACACTCC
GAGTGCAGGAACACAGTGCCGCCTTTTTCGATACCGGCATCGCCGAAGTA
ATCGTGGAGGCTCTTCGCGCCCATCCCAAACACAAGATAGTCCAGCGAAA
CGGAGCGTGGGCCATCCGCAATATGGTGTCACGGTCGCGGAACCAGTGTG
AAACCTGGATCTCCTTCGGCGTTGAGGATCTACTAAATATGGCAATGAAG
GAGCACCCCAGTGTGGAGCAGGACATCAAGGCGGCGTTGCGCGACCTCGG
CTGTAGTGTCCACTTGCGCGAGGAATGGACGGGCACGGCGGAGAAAAAAA
TTGCCGCCTAAAAGCTTTCTAGACCAT
BS09353.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1395 | CG5721-PA | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-RA | 1601 | CG5721-RA | 100..1495 | 16..1411 | 6980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18182541..18183821 | 1411..131 | 6405 | 100 | Minus |
| 2R | 25286936 | 2R | 18183873..18183991 | 134..16 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:28:08 has no hits.
BS09353.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:39 Download gff for
BS09353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 124..1516 | 17..1409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:37 Download gff for
BS09353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 101..1493 | 17..1409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:28 Download gff for
BS09353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5721-RA | 101..1493 | 17..1409 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:28 Download gff for
BS09353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18182543..18183818 | 134..1409 | 100 | <- | Minus |
| 2R | 18183874..18183990 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:37 Download gff for
BS09353.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14070048..14071323 | 134..1409 | 100 | <- | Minus |
| arm_2R | 14071379..14071495 | 17..133 | 100 | | Minus |
BS09353.pep Sequence
Translation from 16 to 1410
> BS09353.pep
MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDL
SVNPQTGQPVINETVDKIKEHIGQKLEETTELLEQLATLDAECKKSLAHR
VLAGKNGAHDALITLLEETLSAESPNESVLKKSLEAINSLTHKQPDLFDA
EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEMNRQNIMNTSALKLM
KPLLGKGKDRLVRELTAVFRFLVLDDDIRVEFGCAHEHARQIAGEVLITL
VELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLKSVFEIMSSNL
DEVRLNREALKLLRALAGQDSVKSHIVQQGVAPIIKQLLETHQSNENIVA
AALACVTTLTLRVQEHSAAFFDTGIAEVIVEALRAHPKHKIVQRNGAWAI
RNMVSRSRNQCETWISFGVEDLLNMAMKEHPSVEQDIKAALRDLGCSVHL
REEWTGTAEKKIAA*
BS09353.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5721-PA | 464 | CG5721-PA | 1..464 | 1..464 | 2311 | 100 | Plus |
