Clone Sequence Records
BS09359.5prime Sequence
875 bp (799 high quality bases) assembled on 2006-01-29
> BS09359.5prime
GAAGTTATCAGTCGACATGGGTTCCGTCAACTGCAAGGAGTACAAGACCA
CGGGCAGCACTCCCAAAAAGGAGAAGTCGACAGGTGGTGCCGTGGGTTCC
TACCAGTCCAAGTGCAGCAACCAGAGTCCCAGTACAACCATGTCGACGGA
AGAGTCTTCGCCGGATTCGGAGTACACAAGTGCGGTCCCCGTGGACTGCA
GAGTTACGGATCTGAAGGAGAACGAAATGAAGCAGGTGGACTTCGATGAG
GACACCCGCGTGCTGCTCGTGAAGCAGAACGATCGTCTGCTAGCAGTGGG
TGCTAAGTGCACCCATTACGGAGCTCCGCTCCAGACTGGAGCTTTGGGTT
TGGGTCGTGTCCGCTGTCCTTGGCACGGCGCTTGCTTTAACCTGGAAAAC
GGAGACATTGAGGACTTTCCTGGTCTCGATTCCCTGCCATGTTATCGCGT
GGAAGTGGGTAACGAGGGACAGGTGATGCTCCGTGCAAAGCGATCGGATC
TGGTGAATAACAAGCGACTCAAGAACATGGTCCGACGCAAGCCCGACGAT
CAGCGAGTGTTCATCGTGGTTGGCGGTGGTCCTTCTGGCGCTGTAGCCGT
GGAAACCATCCGACAGGAGGGCTTTACTGGGCGCCTAATCTTTGTGTGCC
GCGAAGACTATCTGCCCTACGATCGCGTTAAGATCTCCAAGGCTATGAAC
CTTGAGATCGAGCAGCTGCGGTTCCGCGACGAGGAGTTCTACAAAGAGTA
CGATATCGAACTGTGGCAAGGAGTCGCCGCCGAGAAGTTGGATACCGCTC
AGAAAGAGCTGCACTGCAGCAATGGCTACGTGGTGAAGTACGATAAAATC
TACCTGGCCACAGGCTGCTCCGCCT
BS09359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-PE | 1944 | CG4199-RE | 163..1021 | 17..875 | 4295 | 100 | Plus |
| CG4199-PF | 1998 | CG4199-RF | 217..1075 | 17..875 | 4295 | 100 | Plus |
| CG4199-PC | 1782 | CG4199-RC | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG4199-PD | 1782 | CG4199-RD | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG4199-PB | 1782 | CG4199-RB | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG4199-PA | 1659 | CG4199-RA | 1..736 | 140..875 | 3680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 2356 | CG4199-RI | 301..1159 | 17..875 | 4295 | 100 | Plus |
| CG4199-RH | 2521 | CG4199-RH | 466..1324 | 17..875 | 4295 | 100 | Plus |
| CG4199-RG | 2317 | CG4199-RG | 262..1120 | 17..875 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2067632..2068430 | 875..77 | 3980 | 99.9 | Minus |
| X | 23542271 | X | 2071358..2071426 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:23:54 has no hits.
BS09359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:13 Download gff for
BS09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-PB | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:16:01 Download gff for
BS09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-PB | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:23:05 Download gff for
BS09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 258..1120 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:33:02 Download gff for
BS09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 258..1120 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:33:02 Download gff for
BS09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2067632..2068423 | 84..875 | 100 | <- | Minus |
| X | 2071360..2071430 | 9..83 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:23:05 Download gff for
BS09359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1961665..1962456 | 84..875 | 100 | <- | Minus |
| arm_X | 1965393..1965463 | 9..83 | 94 | | Minus |
BS09359.3prime Sequence
952 bp (833 high quality bases) assembled on 2006-01-29
> BS09359.3prime
ATGGTCTAGAAAGCTTTTAGCGAACTTGGGGCAACGGCTGGCCAAGCTTC
TTTGTCCAGTCCTCACGGGTGGCCGGGTCTTCGATCTGGCCACGACCGAG
GCACTTGCCCTGCGAGATTAGCTCGGCAAACTGGGCCACAATCGGATCCC
GGCCGCACGAAGCCACCGCTGTCACCGTATCCGCCTCGTTGATGAAGTAG
GCCACAAACTTAAAGTCCTCCATGCTGCCGTCAATGATCACATCCTTGTA
AGAGCCATGCCCGGCATACCGAATTCCCTTGCCGAAGATGAGGGTGAAAA
AGAAGGGCACGGCCTCCAGCTTCTTTACCCCGCCGCACATGTTGATGGCC
GCCACTCGTCCATGGTATTGAGCCAGCTGGTAATGCCCGATGTTCACGCG
ATCGTGGGCCAGCCCGTGAATGTGGGCGTTTGCTATATCACCGCCCACAT
ACACATCGGGTACATTGGACTCCAGGAAATCAGTGACGTCCACGGATCCG
TTACGATTTACCTTCACGCCCGACTTGGCCAGAAATTGGGTGTTGAGCTT
GGAGCCAGTGCCCAAGATCAGCAGATCGCAAGGCAGACGCGTGTCATCTA
CCAGCACCACCTCTGATACCTTGCCGTCTTCGTTGCCAACGATCTCGGCG
ATGCCGCTCTCCATGCGCATGACCACCTTGTTGTCCTCGAACAGCTGGAG
CACCCTCTGACCAATCTCCGCGCCGAATGCGGCCTTAAGTGGGACGTTTT
CACGACCCACAACCGTGACGCTTTGCACTTTGGAGACCAACCCAGCAGCT
GCCTCCAAGGCGATAAAGCTCGATCCCAGACAGACGACGCGGGACTCCGG
GGTGATCGATGNCAATATCGCCTTTGTATCCGCCAACTCTCGGAACAGTG
CGACGTTCTCCAAGTAACACCGGGGATAGGCGGCCGGAAGGCGGAGCAAC
CT
BS09359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-PE | 1944 | CG4199-RE | 1067..1944 | 894..17 | 4371 | 99.8 | Minus |
| CG4199-PF | 1998 | CG4199-RF | 1121..1998 | 894..17 | 4371 | 99.8 | Minus |
| CG4199-PC | 1782 | CG4199-RC | 905..1782 | 894..17 | 4371 | 99.8 | Minus |
| CG4199-PD | 1782 | CG4199-RD | 905..1782 | 894..17 | 4371 | 99.8 | Minus |
| CG4199-PB | 1782 | CG4199-RB | 905..1782 | 894..17 | 4371 | 99.8 | Minus |
| CG4199-PA | 1659 | CG4199-RA | 782..1659 | 894..17 | 4371 | 99.8 | Minus |
| CG4199-PE | 1944 | CG4199-RE | 1012..1045 | 948..915 | 145 | 97 | Minus |
| CG4199-PF | 1998 | CG4199-RF | 1066..1099 | 948..915 | 145 | 97 | Minus |
| CG4199-PC | 1782 | CG4199-RC | 850..883 | 948..915 | 145 | 97 | Minus |
| CG4199-PD | 1782 | CG4199-RD | 850..883 | 948..915 | 145 | 97 | Minus |
| CG4199-PB | 1782 | CG4199-RB | 850..883 | 948..915 | 145 | 97 | Minus |
| CG4199-PA | 1659 | CG4199-RA | 727..760 | 948..915 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 2356 | CG4199-RI | 1146..2083 | 952..16 | 4579 | 99.4 | Minus |
| CG4199-RH | 2521 | CG4199-RH | 1311..2248 | 952..16 | 4579 | 99.4 | Minus |
| CG4199-RG | 2317 | CG4199-RG | 1107..2044 | 952..16 | 4579 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2066708..2067645 | 16..952 | 4504 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:36:45 has no hits.
BS09359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:12 Download gff for
BS09359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-PB | 846..1782 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:15:59 Download gff for
BS09359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-PB | 846..1782 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:06:38 Download gff for
BS09359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 1107..2044 | 16..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:46 Download gff for
BS09359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 1107..2044 | 16..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:46 Download gff for
BS09359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2066708..2067645 | 16..952 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:06:38 Download gff for
BS09359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1960741..1961678 | 16..952 | 99 | | Plus |
BS09359.complete Sequence
1814 bp assembled on 2009-08-26
GenBank Submission: KX802262
> BS09359.complete
GAAGTTATCAGTCGACATGGGTTCCGTCAACTGCAAGGAGTACAAGACCA
CGGGCAGCACTCCCAAAAAGGAGAAGTCGACAGGTGGTGCCGTGGGTTCC
TACCAGTCCAAGTGCAGCAACCAGAGTCCCAGTACAACCATGTCGACGGA
AGAGTCTTCGCCGGATTCGGAGTACACAAGTGCGGTCCCCGTGGACTGCA
GAGTTACGGATCTGAAGGAGAACGAAATGAAGCAGGTGGACTTCGATGAG
GACACCCGCGTGCTGCTCGTGAAGCAGAACGATCGTCTGCTAGCAGTGGG
TGCTAAGTGCACCCATTACGGAGCTCCGCTCCAGACTGGAGCTTTGGGTT
TGGGTCGTGTCCGCTGTCCTTGGCACGGCGCTTGCTTTAACCTGGAAAAC
GGAGACATTGAGGACTTTCCTGGTCTCGATTCCCTGCCATGTTATCGCGT
GGAAGTGGGTAACGAGGGACAGGTGATGCTCCGTGCAAAGCGATCGGATC
TGGTGAATAACAAGCGACTCAAGAACATGGTCCGACGCAAGCCCGACGAT
CAGCGAGTGTTCATCGTGGTTGGCGGTGGTCCTTCTGGCGCTGTAGCCGT
GGAAACCATCCGACAGGAGGGCTTTACTGGGCGCCTAATCTTTGTGTGCC
GCGAAGACTATCTGCCCTACGATCGCGTTAAGATCTCCAAGGCTATGAAC
CTTGAGATCGAGCAGCTGCGGTTCCGCGACGAGGAGTTCTACAAAGAGTA
CGATATCGAACTGTGGCAAGGAGTCGCCGCCGAGAAGTTGGATACCGCTC
AGAAAGAGCTGCACTGCAGCAATGGCTACGTGGTGAAGTACGATAAAATC
TACCTGGCCACAGGCTGCTCCGCCTTCCGGCCGCCTATTCCCGGTGTTAA
CTTGGAGAACGTCCGCACTGTCCGAGAGTTGGCGGATACAAAGGCGATAT
TGGCATCGATCACCCCGGAGTCCCGCGTCGTCTGTCTGGGATCGAGCTTT
ATCGCCTTGGAGGCAGCTGCTGGGTTGGTCTCCAAAGTGCAAAGCGTCAC
GGTTGTGGGTCGTGAAAACGTCCCACTTAAGGCCGCATTCGGCGCGGAGA
TTGGTCAGAGGGTGCTCCAGCTGTTCGAGGACAACAAGGTGGTCATGCGC
ATGGAGAGCGGCATCGCCGAGATCGTTGGCAACGAAGACGGCAAGGTATC
AGAGGTGGTGCTGGTAGATGACACGCGTCTGCCTTGCGATCTGCTGATCT
TGGGCACTGGCTCCAAGCTCAACACCCAATTTCTGGCCAAGTCGGGCGTG
AAGGTAAATCGTAACGGATCCGTGGACGTCACTGATTTCCTGGAGTCCAA
TGTACCCGATGTGTATGTGGGCGGTGATATAGCAAACGCCCACATTCACG
GGCTGGCCCACGATCGCGTGAACATCGGGCATTACCAGCTGGCTCAATAC
CATGGACGAGTGGCGGCCATCAACATGTGCGGCGGGGTAAAGAAGCTGGA
GGCCGTGCCCTTCTTTTTCACCCTCATCTTCGGCAAGGGAATTCGGTATG
CCGGGCATGGCTCTTACAAGGATGTGATCATTGACGGCAGCATGGAGGAC
TTTAAGTTTGTGGCCTACTTCATCAACGAGGCGGATACGGTGACAGCGGT
GGCTTCGTGCGGCCGGGATCCGATTGTGGCCCAGTTTGCCGAGCTAATCT
CGCAGGGCAAGTGCCTCGGTCGTGGCCAGATCGAAGACCCGGCCACCCGT
GAGGACTGGACAAAGAAGCTTGGCCAGCCGTTGCCCCAAGTTCGCTAAAA
GCTTTCTAGACCAT
BS09359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 1782 | CG4199-PI | 1..1782 | 17..1798 | 8910 | 100 | Plus |
| CG4199-RH | 1782 | CG4199-PH | 1..1782 | 17..1798 | 8910 | 100 | Plus |
| CG4199-RG | 1782 | CG4199-PG | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-RI | 2356 | CG4199-RI | 301..2083 | 17..1799 | 8915 | 100 | Plus |
| CG4199-RH | 2521 | CG4199-RH | 466..2248 | 17..1799 | 8915 | 100 | Plus |
| CG4199-RG | 2317 | CG4199-RG | 262..2044 | 17..1799 | 8915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2066708..2068430 | 1799..77 | 8600 | 99.9 | Minus |
| X | 23542271 | X | 2071358..2071426 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:34:24 has no hits.
BS09359.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:17 Download gff for
BS09359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RB | 316..2095 | 17..1796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:27 Download gff for
BS09359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 262..2041 | 17..1796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:45 Download gff for
BS09359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4199-RG | 262..2041 | 17..1796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:45 Download gff for
BS09359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2066711..2068423 | 84..1796 | 100 | <- | Minus |
| X | 2071360..2071426 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:27 Download gff for
BS09359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1960744..1962456 | 84..1796 | 100 | <- | Minus |
| arm_X | 1965393..1965459 | 17..83 | 100 | | Minus |
BS09359.pep Sequence
Translation from 16 to 1797
> BS09359.pep
MGSVNCKEYKTTGSTPKKEKSTGGAVGSYQSKCSNQSPSTTMSTEESSPD
SEYTSAVPVDCRVTDLKENEMKQVDFDEDTRVLLVKQNDRLLAVGAKCTH
YGAPLQTGALGLGRVRCPWHGACFNLENGDIEDFPGLDSLPCYRVEVGNE
GQVMLRAKRSDLVNNKRLKNMVRRKPDDQRVFIVVGGGPSGAVAVETIRQ
EGFTGRLIFVCREDYLPYDRVKISKAMNLEIEQLRFRDEEFYKEYDIELW
QGVAAEKLDTAQKELHCSNGYVVKYDKIYLATGCSAFRPPIPGVNLENVR
TVRELADTKAILASITPESRVVCLGSSFIALEAAAGLVSKVQSVTVVGRE
NVPLKAAFGAEIGQRVLQLFEDNKVVMRMESGIAEIVGNEDGKVSEVVLV
DDTRLPCDLLILGTGSKLNTQFLAKSGVKVNRNGSVDVTDFLESNVPDVY
VGGDIANAHIHGLAHDRVNIGHYQLAQYHGRVAAINMCGGVKKLEAVPFF
FTLIFGKGIRYAGHGSYKDVIIDGSMEDFKFVAYFINEADTVTAVASCGR
DPIVAQFAELISQGKCLGRGQIEDPATREDWTKKLGQPLPQVR*
BS09359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4199-PI | 593 | CG4199-PI | 1..593 | 1..593 | 3076 | 100 | Plus |
| CG4199-PH | 593 | CG4199-PH | 1..593 | 1..593 | 3076 | 100 | Plus |
| CG4199-PG | 593 | CG4199-PG | 1..593 | 1..593 | 3076 | 100 | Plus |
| CG4199-PB | 593 | CG4199-PB | 1..593 | 1..593 | 3076 | 100 | Plus |
| CG4199-PD | 593 | CG4199-PD | 1..593 | 1..593 | 3076 | 100 | Plus |
