Clone Sequence Records
BS09364.3prime Sequence
891 bp (799 high quality bases) assembled on 2006-01-29
> BS09364.3prime
ATGGTCTAGAAAGCTTTCAGTTAAAGTCAGTGTACAGATCGGGACTTCTG
GGCGCTGCTGTTGGCTGGGCCGGTTGCTCTAGGCTAGCTGCCATCTGTCG
CAGATTTTCGACGCCAGTTAGCAATTGCCTCAGATTCTGTTCAGCGGTGT
CGGCGGCGCGCAGCAAATCCCTAGACAAATGCTGTGTTCTGGACGGTCGT
TCTGCGCTAATCCCGCTGCTGGTGGAGGCTTCACTGTCTCTACCAGGTGT
CGCCACTGGAACTCCTCCTGTTGCGCAATCAGAACTTCCAGAACTTCCTC
TTAGAGAGCGAAGTTCCGCCTCTAGTTGAGCCAGCTGTCGCCTTAGGTGT
TGCGTGGTTTGCGTATTGGTCGTCGTGGCTAGGGCCTCCCGGCGCCGCGA
CGTCTCTGACAGTTGCAGAAGCTGCTGCTCAAACTCGCTGGCCCGTCTGG
TCTGGAGATTAAGTTCCGCACGAGCTTCCTGCAGCTCCCGCTGTAGACGT
TCGTTCTCCTGTCTCAGTGTCGACAGTTGCAACGTACCTTCCGCCTCCTG
GGGAGGCGAGTCAATAGGGTTGGAGGGCAGCCCGATAGCTACGTCAGCTA
GTCGCTGAGACGAGTGAATTATGGAACCGTCGGACAGAAAGTCGGGCAGC
ATTTTGACGGTAGAGCCGGCGGTTGGTTCGCCAGTTGGACCGGGGAGGGC
GGCAGCACTGGAACATCTGGGTGCGAGAGAGGACGGCAGAAGCCCTACTG
CTCCGCTCGACGCTTCAGCTCCAACCAGAGGGGAGTTTGGCGGAGAGCTC
AGAGCATCCTGACCGGCGCACCAAGCATCCGGCAAGTGATCCTGCACGAA
GTCTGGCAGGGCTGATGCTGCAGCAGCACTACCACCGGGCT
BS09364.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11238-PA | 1758 | l(3)04053-RA | 887..1758 | 888..17 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:49:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)04053-RA | 2469 | CG11238-RA | 1099..1970 | 888..17 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22739655..22740224 | 319..888 | 2850 | 100 | Plus |
| 3L | 28110227 | 3L | 22739271..22739464 | 128..321 | 970 | 100 | Plus |
| 3L | 28110227 | 3L | 22739101..22739214 | 17..130 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:49:34 has no hits.
BS09364.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:22 Download gff for
BS09364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11238-PA | 885..1758 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:16:14 Download gff for
BS09364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11238-PA | 885..1758 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:34:35 Download gff for
BS09364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)04053-RA | 1097..1973 | 12..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:49:28 Download gff for
BS09364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)04053-RA | 1097..1973 | 12..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:49:28 Download gff for
BS09364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22739098..22739212 | 12..128 | 97 | <- | Plus |
| 3L | 22739272..22739462 | 129..319 | 100 | <- | Plus |
| 3L | 22739656..22740226 | 320..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:34:35 Download gff for
BS09364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22732198..22732312 | 12..128 | 97 | <- | Plus |
| arm_3L | 22732372..22732562 | 129..319 | 100 | <- | Plus |
| arm_3L | 22732756..22733326 | 320..891 | 99 | | Plus |
BS09364.5prime Sequence
819 bp (818 high quality bases) assembled on 2006-01-29
> BS09364.5prime
GAAGTTATCAGTCGACATGGCAAATGGAAGTGCGACCGAAGCGGCGGCCA
CGGCCAATCCGCAGCAGAGGATTCCACAAGCCGCACAGCAAGCGCTTCTT
ACCGAGACGACAATGGGCTCAAAAGATTGCGCGCCGGCCGCTTTGGGGGT
AAACGATCTCGTGGCGGACGTGTGTATGAACGGCCGCGGAGCGGACTTCC
CCAGCATACGGACCACAACGTCCACGGGAGGAGCGGGACCAGCAGCAGCT
TCCTCGTCATCGTTCTCCTTTAAACATTTTCTAAGCAGTACCGGAACGGT
GACTGCCCCGACTAGCACGGTGACCTCGGCTGCCGTGCAAACGTCAACGG
GTGCCCGACCTAAGGTACCTCAGTCAGCCTCTGTCTCCCATATGCAGCCG
CCTGATGTGAACGGCAGCAGTGCATCCTCTAGAATGAAGCGATCCCCGCG
CTTCAGTAGTTTTGACTCGCAGGCGAGTCTGGCGGAGTACGCATCATGTG
GGGGAGGCACATCCAGTAGCAGCGGCGGGTCGCAATCTCAGCACCGCTTG
AGGCCGGATCATCGGCTGGGTCACGATGCTGTTCAGGACGCTCTGGATAA
CGATGATGACGACCATGTGGCTCTGGCTCAGGTGCGCAACACAAACAGGC
ATTACGATGAAAGAATAGACGACGATATTTTTCCATCCGCTTCCAACCAG
CAACCTGCCGTTGGCTCGCGCTACGTGCCACGCTCGTACTCCAACTACGA
TATGCCTCCCCATTTGCCAGGCCCTTCGTCATCGCCCCGTCGTCGGCCGA
CTGGAAACCGCGACCAACG
BS09364.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11238-PA | 1758 | l(3)04053-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:51:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)04053-RA | 2469 | CG11238-RA | 213..1015 | 17..819 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22740519..22741176 | 674..17 | 3290 | 100 | Minus |
| 3L | 28110227 | 3L | 22740308..22740453 | 819..674 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 01:51:22 has no hits.
BS09364.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:23 Download gff for
BS09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11238-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:16:16 Download gff for
BS09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11238-PA | 1..803 | 17..819 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:35:28 Download gff for
BS09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)04053-RA | 206..1015 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:39 Download gff for
BS09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)04053-RA | 206..1015 | 9..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:39 Download gff for
BS09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22740308..22740452 | 675..819 | 100 | <- | Minus |
| 3L | 22740519..22741183 | 9..674 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:35:28 Download gff for
BS09364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22733408..22733552 | 675..819 | 100 | <- | Minus |
| arm_3L | 22733619..22734283 | 9..674 | 99 | | Minus |
BS09364.complete Sequence
1790 bp assembled on 2009-08-26
GenBank Submission: KX800558
> BS09364.complete
GAAGTTATCAGTCGACATGGCAAATGGAAGTGCGACCGAAGCGGCGGCCA
CGGCCAATCCGCAGCAGAGGATTCCACAAGCCGCACAGCAAGCGCTTCTT
ACCGAGACGACAATGGGCTCAAAAGATTGCGCGCCGGCCGCTTTGGGGGT
AAACGATCTCGTGGCGGACGTGTGTATGAACGGCCGCGGAGCGGACTTCC
CCAGCATACGGACCACAACGTCCACGGGAGGAGCGGGACCAGCAGCAGCT
TCCTCGTCATCGTTCTCCTTTAAACATTTTCTAAGCAGTACCGGAACGGT
GACTGCCCCGACTAGCACGGTGACCTCGGCTGCCGTGCAAACGTCAACGG
GTGCCCGACCTAAGGTACCTCAGTCAGCCTCTGTCTCCCATATGCAGCCG
CCTGATGTGAACGGCAGCAGTGCATCCTCTAGAATGAAGCGATCCCCGCG
CTTCAGTAGTTTTGACTCGCAGGCGAGTCTGGCGGAGTACGCATCATGTG
GGGGAGGCACATCCAGTAGCAGCGGCGGGTCGCAATCTCAGCACCGCTTG
AGGCCGGATCATCGGCTGGGTCACGATGCTGTTCAGGACGCTCTGGATAA
CGATGATGACGACCATGTGGCTCTGGCTCAGGTGCGCAACACAAACAGGC
ATTACGATGAAAGAATAGACGACGATATTTTTCCATCCGCTTCCAACCAG
CAACCTGCCGTTGGCTCGCGCTACGTGCCACGCTCGTACTCCAACTACGA
TATGCCTCCCCATTTGCCAGGCCCTTCGTCATCGCCCCGTCGTCGGCCGA
CTGGAAACCGCGACCAACGCCCCACCAGACTTGTGCTGTCTGCCGGCCCC
AAGATGAAGCTTGACCTGCCCCTGGATACATGCAATGTAGCTGGCGGCGG
AGCCGGTGGTAGTGCTGCTGCAGCATCAGCCCTGCCAGACTTCGTGCAGG
ATCACTTGCCGGATGCTTGGTGCGCCGGTCAGGATGCTCTGAGCTCTCCG
CCAAACTCCCCTCTGGTTGGAGCTGAAGCGTCGAGCGGAGCAGTAGGGCT
TCTGCCGTCCTCTCTCGCACCCAGATGTTCCAGTGCTGCCGCCCTCCCCG
GTCCAACTGGCGAACCAACCGCCGGCTCTACCGTCAAAATGCTGCCCGAC
TTTCTGTCCGACGGTTCCATAATTCACTCGTCTCAGCGACTAGCTGACGT
AGCTATCGGGCTGCCCTCCAACCCTATTGACTCGCCTCCCCAGGAGGCGG
AAGGTACGTTGCAACTGTCGACACTGAGACAGGAGAACGAACGTCTACAG
CGGGAGCTGCAGGAAGCTCGTGCGGAACTTAATCTCCAGACCAGACGGGC
CAGCGAGTTTGAGCAGCAGCTTCTGCAACTGTCAGAGACGTCGCGGCGCC
GGGAGGCCCTAGCCACGACGACCAATACGCAAACCACGCAACACCTAAGG
CGACAGCTGGCTCAACTAGAGGCGGAACTTCGCTCTCTAAGAGGAAGTTC
TGGAAGTTCTGATTGCGCAACAGGAGGAGTTCCAGTGGCGACACCTGGTA
GAGACAGTGAAGCCTCCACCAGCAGCGGGATTAGCGCAGAACGACCGTCC
AGAACACAGCATTTGTCTAGGGATTTGCTGCGCGCCGCCGACACCGCTGA
ACAGAATCTGAGGCAATTGCTAACTGGCGTCGAAAATCTGCGACAGATGG
CAGCTAGCCTAGAGCAACCGGCCCAGCCAACAGCAGCGCCCAGAAGTCCC
GATCTGTACACTGACTTTAACTGAAAGCTTTCTAGACCAT
BS09364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)04053-RA | 1758 | CG11238-PA | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)04053-RA | 2469 | CG11238-RA | 213..1970 | 17..1774 | 8790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22739655..22740453 | 1472..674 | 3995 | 100 | Minus |
| 3L | 28110227 | 3L | 22740519..22741176 | 674..17 | 3290 | 100 | Minus |
| 3L | 28110227 | 3L | 22739271..22739464 | 1663..1470 | 970 | 100 | Minus |
| 3L | 28110227 | 3L | 22739101..22739214 | 1774..1661 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:35:27 has no hits.
BS09364.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:32 Download gff for
BS09364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)04053-RA | 209..1965 | 17..1773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:59 Download gff for
BS09364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)04053-RA | 213..1969 | 17..1773 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:10 Download gff for
BS09364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)04053-RA | 213..1969 | 17..1773 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:10 Download gff for
BS09364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22739102..22739212 | 1663..1773 | 100 | <- | Minus |
| 3L | 22739272..22739462 | 1472..1662 | 100 | <- | Minus |
| 3L | 22739656..22740452 | 675..1471 | 100 | <- | Minus |
| 3L | 22740519..22741176 | 17..674 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:59 Download gff for
BS09364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22732202..22732312 | 1663..1773 | 100 | <- | Minus |
| arm_3L | 22732372..22732562 | 1472..1662 | 100 | <- | Minus |
| arm_3L | 22732756..22733552 | 675..1471 | 100 | <- | Minus |
| arm_3L | 22733619..22734276 | 17..674 | 100 | | Minus |
BS09364.pep Sequence
Translation from 16 to 1773
> BS09364.pep
MANGSATEAAATANPQQRIPQAAQQALLTETTMGSKDCAPAALGVNDLVA
DVCMNGRGADFPSIRTTTSTGGAGPAAASSSSFSFKHFLSSTGTVTAPTS
TVTSAAVQTSTGARPKVPQSASVSHMQPPDVNGSSASSRMKRSPRFSSFD
SQASLAEYASCGGGTSSSSGGSQSQHRLRPDHRLGHDAVQDALDNDDDDH
VALAQVRNTNRHYDERIDDDIFPSASNQQPAVGSRYVPRSYSNYDMPPHL
PGPSSSPRRRPTGNRDQRPTRLVLSAGPKMKLDLPLDTCNVAGGGAGGSA
AAASALPDFVQDHLPDAWCAGQDALSSPPNSPLVGAEASSGAVGLLPSSL
APRCSSAAALPGPTGEPTAGSTVKMLPDFLSDGSIIHSSQRLADVAIGLP
SNPIDSPPQEAEGTLQLSTLRQENERLQRELQEARAELNLQTRRASEFEQ
QLLQLSETSRRREALATTTNTQTTQHLRRQLAQLEAELRSLRGSSGSSDC
ATGGVPVATPGRDSEASTSSGISAERPSRTQHLSRDLLRAADTAEQNLRQ
LLTGVENLRQMAASLEQPAQPTAAPRSPDLYTDFN*
BS09364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)04053-PA | 585 | CG11238-PA | 1..585 | 1..585 | 2971 | 100 | Plus |
