Clone BS09369 Report

Search the DGRC for BS09369

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptNup44A-RA
Protein status:BS09369.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09369.3prime Sequence

950 bp (857 high quality bases) assembled on 2006-01-29

> BS09369.3prime
ATGGTCTAGAAAGCTTTCAGTGCCACGGCACCTGGTTGCCGATGGTGCCC
TTTTTGTAGAACTTGGCCGTGGCCGAGGCGGTAGTGGCCAGTGTCGGAGT
GGGCGGAGCAGGCTCGTAGGTGGGTCCGCTGCCCTCTGCCTTCAAGACGG
CGGCACAGCGCCACTGCCGGTTGTAGTTCATTCGCCACAGACGCACACAA
CCGTCGTCGCCCGTGGAGATCAGCATCGTGGCCAGCATATTCCAACAGAC
GCGCCACACTGGGCAATTGTGCTCGCTAAACTTAATGGTCTGGATGTCCA
ACTTGGAGATGTCCGTGGCGTCCGTTACACCCCGCAAGTTCACAATATAA
AGATCCTTGCTGGCCACTGCCAGCATGTGAAAGGTGCGTCCGGCATTTGG
AGCAAAGGCCACATCCGTGACCGGATCGGTTATATCATTGACAGTATCGA
TTTTAACGCACTTTCGGGAATTCTCGCTGTAGGCGAATAAGAAGACCTTG
CCAGTAGGCGTGGCTGCCTCGTCGCTGCCCGCCGCCAGCAGCTGGGTGAC
CATGTAAGTGGAAGTGTTCCAGGACAAACAGCTCAGCGGCAATTTGTTGC
TAATCTCGTGCTGCACGGGCCACTGCGAGAGGTTCATAATGTCCGGGGCC
TCATAGATGCGAATAATGCCGTCGGCGGAGGCGGTGGCCAGCAGGAGTCC
CAGGTACTTGGGTGCAAACTCCACATCCGTGACACTGGTCCGCGAGTCTA
CAAGGGTGGTGCGGCGCACCCAGCGGCGAGTGGGGGTATTGGTGGAGGAT
ACCTTTTCGCCAATCACCTCCTCCCAAACGGAGGCGGTGCGATCAAATGA
GCATGTGGGCCACACCTGGCCAAATTCCGGGTGCGCCCAGGAAACGCGCC
CAATGGAGCCGGAGTGCGCTTTCCAGCTGCTCGTGACTTCCACTTGCCCT

BS09369.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8722-PB 1065 Nup44A-RB 224..1065 858..17 4210 100 Minus
CG8722-PC 1065 Nup44A-RC 224..1065 858..17 4210 100 Minus
CG8722-PA 1065 Nup44A-RA 224..1065 858..17 4210 100 Minus
CG8722-PB 1065 Nup44A-RB 145..218 937..864 345 98.6 Minus
CG8722-PC 1065 Nup44A-RC 145..218 937..864 345 98.6 Minus
CG8722-PA 1065 Nup44A-RA 145..218 937..864 345 98.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Nup44A-RA 1208 CG8722-RA 225..1159 950..17 4590 99.6 Minus
Nup44A-RC 1331 CG8722-RC 348..1282 950..17 4590 99.6 Minus
Nup44A-RB 1283 CG8722-RB 300..1234 950..17 4590 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7990144..7990563 950..532 1975 98.6 Minus
2R 25286936 2R 7990928..7991234 323..17 1535 100 Minus
2R 25286936 2R 7990658..7990868 533..323 1055 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:25:12 has no hits.

BS09369.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:31 Download gff for BS09369.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8722-PA 131..1065 17..950 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:16:29 Download gff for BS09369.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8722-PA 131..1065 17..950 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:15 Download gff for BS09369.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RB 300..1238 11..950 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:24 Download gff for BS09369.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RB 300..1238 11..950 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:24 Download gff for BS09369.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7990144..7990562 533..950 99 -> Minus
2R 7990659..7990867 324..532 100 -> Minus
2R 7990928..7991238 11..323 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:15 Download gff for BS09369.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3877649..3878067 533..950 99 -> Minus
arm_2R 3878164..3878372 324..532 100 -> Minus
arm_2R 3878433..3878743 11..323 99   Minus

BS09369.5prime Sequence

864 bp (853 high quality bases) assembled on 2006-01-29

> BS09369.5prime
GAAGTTATCAGTCGACATGTTCGACGTGGAACCCATTATTGCCGACCACA
AGGATGTGATACACGACGTGGTCTTCGACTACTACGGCCGCAGGATGGCA
ACCTGTTCCAGCGATCAGACCGTCAAGATTTGGGACGAGGATGGGCAGGG
CAAGTGGAATGTCACGAGCAGCTGGAAAGCGCACTCCGGCTCCATTTGGC
GCGTTTCCTGGGCGCACCCGGAATTTGGCCAGGTTGTGGCCACATGCTCA
TTTGATCGCACCGCCTCCGTTTGGGAGGAGGTGATTGGCGAAAAGGTATC
CTCCACCAATACCCCCACTCGCCGCTGGGTGCGCCGCACCACCCTTGTAG
ACTCGCGGACCAGTGTCACGGATGTGGAGTTTGCACCCAAGTACCTGGGA
CTCCTGCTGGCCACCGCCTCCGCCGACGGCATTATTCGCATCTATGAGGC
CCCGGACATTATGAACCTCTCGCAGTGGCCCGTGCAGCACGAGATTAGCA
ACAAATTGCCGCTGAGCTGTTTGTCCTGGAACACTTCCACTTACATGGTC
ACCCAGCTGCTGGCGGCGGGCAGCGACGAGGCAGCCACGCCTACTGGCAA
GGTCTTCTTATTCGCCTACAGCGAGAATTCCCGAAAGTGCGTTAAAATCG
ATACTGTCAATGATATAACCGATCCGGTCACGGATGTGGCCTTTGCTCCA
AATGCCGGACGCACCTTTCACATGCTGGCAGTGGCCAGCAAGGATCTTTA
TATTGTGAACTTGCGGGGTGTAACGGACGCCACGGACATCTCCAAGTTGG
ACATCCAGACCATTAAGTTTAGCGAGCACAATTGCCCAGTGTGGCGCGTC
TGTTGGAATATGCT

BS09369.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8722-PB 1065 Nup44A-RB 1..848 17..864 4240 100 Plus
CG8722-PC 1065 Nup44A-RC 1..848 17..864 4240 100 Plus
CG8722-PA 1065 Nup44A-RA 1..848 17..864 4240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Nup44A-RA 1208 CG8722-RA 94..942 16..864 4245 100 Plus
Nup44A-RC 1331 CG8722-RC 217..1065 16..864 4245 100 Plus
Nup44A-RB 1283 CG8722-RB 169..1017 16..864 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7990123..7990563 126..566 2205 100 Plus
2R 25286936 2R 7990658..7990868 565..775 1055 100 Plus
2R 25286936 2R 7989952..7990063 16..127 560 100 Plus
2R 25286936 2R 7990928..7991017 775..864 450 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:09:39 has no hits.

BS09369.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:32 Download gff for BS09369.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8722-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:16:30 Download gff for BS09369.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8722-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:49 Download gff for BS09369.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RB 169..1017 16..864 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:33 Download gff for BS09369.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RB 169..1017 16..864 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:33 Download gff for BS09369.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7989952..7990063 16..127 100 -> Plus
2R 7990125..7990562 128..565 100 -> Plus
2R 7990659..7990867 566..774 100 -> Plus
2R 7990928..7991017 775..864 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:49 Download gff for BS09369.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3877457..3877568 16..127 100 -> Plus
arm_2R 3877630..3878067 128..565 100 -> Plus
arm_2R 3878164..3878372 566..774 100 -> Plus
arm_2R 3878433..3878522 775..864 100   Plus

BS09369.complete Sequence

1097 bp (1097 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636403

> BS09369.complete
GAAGTTATCAGTCGACATGTTCGACGTGGAACCCATTATTGCCGACCACA
AGGATGTGATACACGACGTGGTCTTCGACTACTACGGCCGCAGGATGGCA
ACCTGTTCCAGCGATCAGACCGTCAAGATTTGGGACGAGGATGGGCAGGG
CAAGTGGAATGTCACGAGCAGCTGGAAAGCGCACTCCGGCTCCATTTGGC
GCGTTTCCTGGGCGCACCCGGAATTTGGCCAGGTTGTGGCCACATGCTCA
TTTGATCGCACCGCCTCCGTTTGGGAGGAGGTGATTGGCGAAAAGGTATC
CTCCACCAATACCCCCACTCGCCGCTGGGTGCGCCGCACCACCCTTGTAG
ACTCGCGGACCAGTGTCACGGATGTGGAGTTTGCACCCAAGTACCTGGGA
CTCCTGCTGGCCACCGCCTCCGCCGACGGCATTATTCGCATCTATGAGGC
CCCGGACATTATGAACCTCTCGCAGTGGCCCGTGCAGCACGAGATTAGCA
ACAAATTGCCGCTGAGCTGTTTGTCCTGGAACACTTCCACTTACATGGTC
ACCCAGCTGCTGGCGGCGGGCAGCGACGAGGCAGCCACGCCTACTGGCAA
GGTCTTCTTATTCGCCTACAGCGAGAATTCCCGAAAGTGCGTTAAAATCG
ATACTGTCAATGATATAACCGATCCGGTCACGGATGTGGCCTTTGCTCCA
AATGCCGGACGCACCTTTCACATGCTGGCAGTGGCCAGCAAGGATCTTTA
TATTGTGAACTTGCGGGGTGTAACGGACGCCACGGACATCTCCAAGTTGG
ACATCCAGACCATTAAGTTTAGCGAGCACAATTGCCCAGTGTGGCGCGTC
TGTTGGAATATGCTGGCCACGATGCTGATCTCCACGGGCGACGACGGTTG
TGTGCGTCTGTGGCGAATGAACTACAACCGGCAGTGGCGCTGTGCCGCCG
TCTTGAAGGCAGAGGGCAGCGGACCCACCTACGAGCCTGCTCCGCCCACT
CCGACACTGGCCACTACCGCCTCGGCCACGGCCAAGTTCTACAAAAAGGG
CACCATCGGCAACCAGGTGCCGTGGCACTGAAAGCTTTCTAGACCAT

BS09369.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
Nup44A-RA 1065 CG8722-PA 1..1065 17..1081 5325 100 Plus
Nup44A-RC 1065 CG8722-PC 1..1065 17..1081 5325 100 Plus
Nup44A-RB 1065 CG8722-PB 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Nup44A-RA 1208 CG8722-RA 94..1159 16..1081 5330 100 Plus
Nup44A-RC 1331 CG8722-RC 217..1282 16..1081 5330 100 Plus
Nup44A-RB 1283 CG8722-RB 169..1234 16..1081 5330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7990123..7990563 126..566 2205 100 Plus
2R 25286936 2R 7990928..7991234 775..1081 1535 100 Plus
2R 25286936 2R 7990658..7990868 565..775 1055 100 Plus
2R 25286936 2R 7989952..7990063 16..127 560 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:26:03 has no hits.

BS09369.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:22 Download gff for BS09369.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1..1065 17..1081 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:44 Download gff for BS09369.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1286..2355 16..1087 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:24 Download gff for BS09369.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RB 175..1233 22..1080 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:22 Download gff for BS09369.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RA 1286..2355 16..1087 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:46 Download gff for BS09369.complete
Subject Subject Range Query Range Percent Splice Strand
Nup44A-RB 175..1233 22..1080 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:46 Download gff for BS09369.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7989958..7990063 22..127 100 -> Plus
2R 7990125..7990562 128..565 100 -> Plus
2R 7990659..7990867 566..774 100 -> Plus
2R 7990928..7991233 775..1080 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:24 Download gff for BS09369.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3878433..3878738 775..1080 100   Plus
arm_2R 3877463..3877568 22..127 100 -> Plus
arm_2R 3877630..3878067 128..565 100 -> Plus
arm_2R 3878164..3878372 566..774 100 -> Plus

BS09369.pep Sequence

Translation from 16 to 1080

> BS09369.pep
MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVT
SSWKAHSGSIWRVSWAHPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTP
TRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASADGIIRIYEAPDIMN
LSQWPVQHEISNKLPLSCLSWNTSTYMVTQLLAAGSDEAATPTGKVFLFA
YSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNLR
GVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWR
MNYNRQWRCAAVLKAEGSGPTYEPAPPTPTLATTASATAKFYKKGTIGNQ
VPWH*

BS09369.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Nup44A-PA 354 CG8722-PA 1..354 1..354 1901 100 Plus
Nup44A-PC 354 CG8722-PC 1..354 1..354 1901 100 Plus
Nup44A-PB 354 CG8722-PB 1..354 1..354 1901 100 Plus
Sec13-PB 356 CG6773-PB 5..296 4..307 357 27.7 Plus
Sec13-PA 356 CG6773-PA 5..296 4..307 357 27.7 Plus