Clone Sequence Records
BS09369.3prime Sequence
950 bp (857 high quality bases) assembled on 2006-01-29
> BS09369.3prime
ATGGTCTAGAAAGCTTTCAGTGCCACGGCACCTGGTTGCCGATGGTGCCC
TTTTTGTAGAACTTGGCCGTGGCCGAGGCGGTAGTGGCCAGTGTCGGAGT
GGGCGGAGCAGGCTCGTAGGTGGGTCCGCTGCCCTCTGCCTTCAAGACGG
CGGCACAGCGCCACTGCCGGTTGTAGTTCATTCGCCACAGACGCACACAA
CCGTCGTCGCCCGTGGAGATCAGCATCGTGGCCAGCATATTCCAACAGAC
GCGCCACACTGGGCAATTGTGCTCGCTAAACTTAATGGTCTGGATGTCCA
ACTTGGAGATGTCCGTGGCGTCCGTTACACCCCGCAAGTTCACAATATAA
AGATCCTTGCTGGCCACTGCCAGCATGTGAAAGGTGCGTCCGGCATTTGG
AGCAAAGGCCACATCCGTGACCGGATCGGTTATATCATTGACAGTATCGA
TTTTAACGCACTTTCGGGAATTCTCGCTGTAGGCGAATAAGAAGACCTTG
CCAGTAGGCGTGGCTGCCTCGTCGCTGCCCGCCGCCAGCAGCTGGGTGAC
CATGTAAGTGGAAGTGTTCCAGGACAAACAGCTCAGCGGCAATTTGTTGC
TAATCTCGTGCTGCACGGGCCACTGCGAGAGGTTCATAATGTCCGGGGCC
TCATAGATGCGAATAATGCCGTCGGCGGAGGCGGTGGCCAGCAGGAGTCC
CAGGTACTTGGGTGCAAACTCCACATCCGTGACACTGGTCCGCGAGTCTA
CAAGGGTGGTGCGGCGCACCCAGCGGCGAGTGGGGGTATTGGTGGAGGAT
ACCTTTTCGCCAATCACCTCCTCCCAAACGGAGGCGGTGCGATCAAATGA
GCATGTGGGCCACACCTGGCCAAATTCCGGGTGCGCCCAGGAAACGCGCC
CAATGGAGCCGGAGTGCGCTTTCCAGCTGCTCGTGACTTCCACTTGCCCT
BS09369.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8722-PB | 1065 | Nup44A-RB | 224..1065 | 858..17 | 4210 | 100 | Minus |
CG8722-PC | 1065 | Nup44A-RC | 224..1065 | 858..17 | 4210 | 100 | Minus |
CG8722-PA | 1065 | Nup44A-RA | 224..1065 | 858..17 | 4210 | 100 | Minus |
CG8722-PB | 1065 | Nup44A-RB | 145..218 | 937..864 | 345 | 98.6 | Minus |
CG8722-PC | 1065 | Nup44A-RC | 145..218 | 937..864 | 345 | 98.6 | Minus |
CG8722-PA | 1065 | Nup44A-RA | 145..218 | 937..864 | 345 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup44A-RA | 1208 | CG8722-RA | 225..1159 | 950..17 | 4590 | 99.6 | Minus |
Nup44A-RC | 1331 | CG8722-RC | 348..1282 | 950..17 | 4590 | 99.6 | Minus |
Nup44A-RB | 1283 | CG8722-RB | 300..1234 | 950..17 | 4590 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7990144..7990563 | 950..532 | 1975 | 98.6 | Minus |
2R | 25286936 | 2R | 7990928..7991234 | 323..17 | 1535 | 100 | Minus |
2R | 25286936 | 2R | 7990658..7990868 | 533..323 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:25:12 has no hits.
BS09369.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:31 Download gff for
BS09369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8722-PA | 131..1065 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:16:29 Download gff for
BS09369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8722-PA | 131..1065 | 17..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:15 Download gff for
BS09369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RB | 300..1238 | 11..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:24 Download gff for
BS09369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RB | 300..1238 | 11..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:24 Download gff for
BS09369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7990144..7990562 | 533..950 | 99 | -> | Minus |
2R | 7990659..7990867 | 324..532 | 100 | -> | Minus |
2R | 7990928..7991238 | 11..323 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:15 Download gff for
BS09369.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3877649..3878067 | 533..950 | 99 | -> | Minus |
arm_2R | 3878164..3878372 | 324..532 | 100 | -> | Minus |
arm_2R | 3878433..3878743 | 11..323 | 99 | | Minus |
BS09369.5prime Sequence
864 bp (853 high quality bases) assembled on 2006-01-29
> BS09369.5prime
GAAGTTATCAGTCGACATGTTCGACGTGGAACCCATTATTGCCGACCACA
AGGATGTGATACACGACGTGGTCTTCGACTACTACGGCCGCAGGATGGCA
ACCTGTTCCAGCGATCAGACCGTCAAGATTTGGGACGAGGATGGGCAGGG
CAAGTGGAATGTCACGAGCAGCTGGAAAGCGCACTCCGGCTCCATTTGGC
GCGTTTCCTGGGCGCACCCGGAATTTGGCCAGGTTGTGGCCACATGCTCA
TTTGATCGCACCGCCTCCGTTTGGGAGGAGGTGATTGGCGAAAAGGTATC
CTCCACCAATACCCCCACTCGCCGCTGGGTGCGCCGCACCACCCTTGTAG
ACTCGCGGACCAGTGTCACGGATGTGGAGTTTGCACCCAAGTACCTGGGA
CTCCTGCTGGCCACCGCCTCCGCCGACGGCATTATTCGCATCTATGAGGC
CCCGGACATTATGAACCTCTCGCAGTGGCCCGTGCAGCACGAGATTAGCA
ACAAATTGCCGCTGAGCTGTTTGTCCTGGAACACTTCCACTTACATGGTC
ACCCAGCTGCTGGCGGCGGGCAGCGACGAGGCAGCCACGCCTACTGGCAA
GGTCTTCTTATTCGCCTACAGCGAGAATTCCCGAAAGTGCGTTAAAATCG
ATACTGTCAATGATATAACCGATCCGGTCACGGATGTGGCCTTTGCTCCA
AATGCCGGACGCACCTTTCACATGCTGGCAGTGGCCAGCAAGGATCTTTA
TATTGTGAACTTGCGGGGTGTAACGGACGCCACGGACATCTCCAAGTTGG
ACATCCAGACCATTAAGTTTAGCGAGCACAATTGCCCAGTGTGGCGCGTC
TGTTGGAATATGCT
BS09369.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8722-PB | 1065 | Nup44A-RB | 1..848 | 17..864 | 4240 | 100 | Plus |
CG8722-PC | 1065 | Nup44A-RC | 1..848 | 17..864 | 4240 | 100 | Plus |
CG8722-PA | 1065 | Nup44A-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup44A-RA | 1208 | CG8722-RA | 94..942 | 16..864 | 4245 | 100 | Plus |
Nup44A-RC | 1331 | CG8722-RC | 217..1065 | 16..864 | 4245 | 100 | Plus |
Nup44A-RB | 1283 | CG8722-RB | 169..1017 | 16..864 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7990123..7990563 | 126..566 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 7990658..7990868 | 565..775 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 7989952..7990063 | 16..127 | 560 | 100 | Plus |
2R | 25286936 | 2R | 7990928..7991017 | 775..864 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:09:39 has no hits.
BS09369.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:32 Download gff for
BS09369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8722-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:16:30 Download gff for
BS09369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8722-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:49 Download gff for
BS09369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RB | 169..1017 | 16..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:00:33 Download gff for
BS09369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RB | 169..1017 | 16..864 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:00:33 Download gff for
BS09369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7989952..7990063 | 16..127 | 100 | -> | Plus |
2R | 7990125..7990562 | 128..565 | 100 | -> | Plus |
2R | 7990659..7990867 | 566..774 | 100 | -> | Plus |
2R | 7990928..7991017 | 775..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:49 Download gff for
BS09369.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3877457..3877568 | 16..127 | 100 | -> | Plus |
arm_2R | 3877630..3878067 | 128..565 | 100 | -> | Plus |
arm_2R | 3878164..3878372 | 566..774 | 100 | -> | Plus |
arm_2R | 3878433..3878522 | 775..864 | 100 | | Plus |
BS09369.complete Sequence
1097 bp (1097 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636403
> BS09369.complete
GAAGTTATCAGTCGACATGTTCGACGTGGAACCCATTATTGCCGACCACA
AGGATGTGATACACGACGTGGTCTTCGACTACTACGGCCGCAGGATGGCA
ACCTGTTCCAGCGATCAGACCGTCAAGATTTGGGACGAGGATGGGCAGGG
CAAGTGGAATGTCACGAGCAGCTGGAAAGCGCACTCCGGCTCCATTTGGC
GCGTTTCCTGGGCGCACCCGGAATTTGGCCAGGTTGTGGCCACATGCTCA
TTTGATCGCACCGCCTCCGTTTGGGAGGAGGTGATTGGCGAAAAGGTATC
CTCCACCAATACCCCCACTCGCCGCTGGGTGCGCCGCACCACCCTTGTAG
ACTCGCGGACCAGTGTCACGGATGTGGAGTTTGCACCCAAGTACCTGGGA
CTCCTGCTGGCCACCGCCTCCGCCGACGGCATTATTCGCATCTATGAGGC
CCCGGACATTATGAACCTCTCGCAGTGGCCCGTGCAGCACGAGATTAGCA
ACAAATTGCCGCTGAGCTGTTTGTCCTGGAACACTTCCACTTACATGGTC
ACCCAGCTGCTGGCGGCGGGCAGCGACGAGGCAGCCACGCCTACTGGCAA
GGTCTTCTTATTCGCCTACAGCGAGAATTCCCGAAAGTGCGTTAAAATCG
ATACTGTCAATGATATAACCGATCCGGTCACGGATGTGGCCTTTGCTCCA
AATGCCGGACGCACCTTTCACATGCTGGCAGTGGCCAGCAAGGATCTTTA
TATTGTGAACTTGCGGGGTGTAACGGACGCCACGGACATCTCCAAGTTGG
ACATCCAGACCATTAAGTTTAGCGAGCACAATTGCCCAGTGTGGCGCGTC
TGTTGGAATATGCTGGCCACGATGCTGATCTCCACGGGCGACGACGGTTG
TGTGCGTCTGTGGCGAATGAACTACAACCGGCAGTGGCGCTGTGCCGCCG
TCTTGAAGGCAGAGGGCAGCGGACCCACCTACGAGCCTGCTCCGCCCACT
CCGACACTGGCCACTACCGCCTCGGCCACGGCCAAGTTCTACAAAAAGGG
CACCATCGGCAACCAGGTGCCGTGGCACTGAAAGCTTTCTAGACCAT
BS09369.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup44A-RA | 1065 | CG8722-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Nup44A-RC | 1065 | CG8722-PC | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Nup44A-RB | 1065 | CG8722-PB | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup44A-RA | 1208 | CG8722-RA | 94..1159 | 16..1081 | 5330 | 100 | Plus |
Nup44A-RC | 1331 | CG8722-RC | 217..1282 | 16..1081 | 5330 | 100 | Plus |
Nup44A-RB | 1283 | CG8722-RB | 169..1234 | 16..1081 | 5330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7990123..7990563 | 126..566 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 7990928..7991234 | 775..1081 | 1535 | 100 | Plus |
2R | 25286936 | 2R | 7990658..7990868 | 565..775 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 7989952..7990063 | 16..127 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:26:03 has no hits.
BS09369.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:22 Download gff for
BS09369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RA | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:44 Download gff for
BS09369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RA | 1286..2355 | 16..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:24 Download gff for
BS09369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RB | 175..1233 | 22..1080 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:22 Download gff for
BS09369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RA | 1286..2355 | 16..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:21:46 Download gff for
BS09369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup44A-RB | 175..1233 | 22..1080 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:21:46 Download gff for
BS09369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7989958..7990063 | 22..127 | 100 | -> | Plus |
2R | 7990125..7990562 | 128..565 | 100 | -> | Plus |
2R | 7990659..7990867 | 566..774 | 100 | -> | Plus |
2R | 7990928..7991233 | 775..1080 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:24 Download gff for
BS09369.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3878433..3878738 | 775..1080 | 100 | | Plus |
arm_2R | 3877463..3877568 | 22..127 | 100 | -> | Plus |
arm_2R | 3877630..3878067 | 128..565 | 100 | -> | Plus |
arm_2R | 3878164..3878372 | 566..774 | 100 | -> | Plus |
BS09369.pep Sequence
Translation from 16 to 1080
> BS09369.pep
MFDVEPIIADHKDVIHDVVFDYYGRRMATCSSDQTVKIWDEDGQGKWNVT
SSWKAHSGSIWRVSWAHPEFGQVVATCSFDRTASVWEEVIGEKVSSTNTP
TRRWVRRTTLVDSRTSVTDVEFAPKYLGLLLATASADGIIRIYEAPDIMN
LSQWPVQHEISNKLPLSCLSWNTSTYMVTQLLAAGSDEAATPTGKVFLFA
YSENSRKCVKIDTVNDITDPVTDVAFAPNAGRTFHMLAVASKDLYIVNLR
GVTDATDISKLDIQTIKFSEHNCPVWRVCWNMLATMLISTGDDGCVRLWR
MNYNRQWRCAAVLKAEGSGPTYEPAPPTPTLATTASATAKFYKKGTIGNQ
VPWH*
BS09369.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup44A-PA | 354 | CG8722-PA | 1..354 | 1..354 | 1901 | 100 | Plus |
Nup44A-PC | 354 | CG8722-PC | 1..354 | 1..354 | 1901 | 100 | Plus |
Nup44A-PB | 354 | CG8722-PB | 1..354 | 1..354 | 1901 | 100 | Plus |
Sec13-PB | 356 | CG6773-PB | 5..296 | 4..307 | 357 | 27.7 | Plus |
Sec13-PA | 356 | CG6773-PA | 5..296 | 4..307 | 357 | 27.7 | Plus |