Clone Sequence Records
BS09380.3prime Sequence
897 bp (844 high quality bases) assembled on 2006-01-29
> BS09380.3prime
ATGGTCTAGAAAGCTTTTACAGGCCAGTGCTCTTGTTCGAGCCCAGGACG
TACTTGTTGTAGCCCTGGTTAAGCTGCTCCAGAATAATGAAGGTCAGCAC
GGTGTGGGGACCCAGGCGGCAGTAGTAGGGCGTGAATCCCTTCCACAGCG
CAAAGACTCCCTCCTGGCGGGCCACGCGCAGCAGGACGTCGGCGGTGCCG
CGGTACTCCGGCTTGCCATCGACCATCTTCATGTTCTGGATACGGGTCTT
GGCAATGTCCAGCGGCATGGAAGTGATGGTGGTCAGTAGACCGCTCAGCA
TGCTGGCGCAGAAGTGCAGCTTGATGCCCTCCTCCATCTGAAGGGGTCCG
TGGCGGAAGTAGGTCTTAAACTGCGAGTAGCTGGCCAGTTGGGTCATGTT
CACGACCATGGCGCGACCCACCGTGGGCAGACTGCCTCTCCACAGAGCCG
TAAGTCCCTCCTCCCTGGTGATCCTAGCCAGGGCGTTGGCCACATTAGTG
TAGTTCCTCCGCTCAGCCACCGGCAACCTGCCGTCGGAAGTCATGCGCAC
CAGGGCCACTTCCGCGGGCGTGCCAATAAAGGCGCCACATGCTCCGGCGA
TCGTGCCCATGGCCATGCTGTCCGTGATGCCGGGACTCCTCTGGAACTTC
TCCCTGAACAGGTCGTTCAGATACGTGTACATGCCCAATCTTCCCGTGGT
GTAGGTTGCCTGTCTCAGCAGAGCAGCTCCGATGCCCTGGTAAAGGGCCA
GAGGTCCTTCCTTGCTCACGATGGTCTGGATGCAGTGCAAGGAGCTGCGG
TACTCCTTCTTGCCACTGCCCGCTCCAGAAATCTGCATGCGGGTCTTGGA
CCAATCTAGCGGCTGCACCACCATGGTGGCTCCCATTCCGGAGAGGC
BS09380.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-PA | 954 | CG1907-RA | 123..954 | 848..17 | 3910 | 98.7 | Minus |
CG1907-PA | 954 | CG1907-RA | 74..116 | 897..855 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-RA | 1623 | CG1907-RA | 540..1421 | 897..16 | 4215 | 98.6 | Minus |
CG18418-RA | 1142 | CG18418-RA | 745..828 | 286..203 | 180 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29619724..29620556 | 848..16 | 4015 | 98.8 | Minus |
3R | 32079331 | 3R | 29619604..29619646 | 897..855 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 05:03:12 has no hits.
BS09380.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:50 Download gff for
BS09380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-PA | 74..954 | 17..897 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:00 Download gff for
BS09380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-PA | 74..954 | 17..897 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:27 Download gff for
BS09380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 540..1421 | 16..897 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:59 Download gff for
BS09380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 540..1421 | 16..897 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:59 Download gff for
BS09380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29619604..29619650 | 852..897 | 97 | -> | Minus |
3R | 29619722..29620556 | 16..851 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:27 Download gff for
BS09380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25445326..25445372 | 852..897 | 97 | -> | Minus |
arm_3R | 25445444..25446278 | 16..851 | 98 | | Minus |
BS09380.5prime Sequence
947 bp (843 high quality bases) assembled on 2006-01-29
> BS09380.5prime
GAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGA
AGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGA
ATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCAT
GCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGC
ACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAG
GGCATCGGAGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATT
GGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGA
GTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGT
GGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTC
CGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCA
ACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGA
GGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGACCCAACT
GGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGA
TGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTA
CTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCA
GAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACG
TCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGA
TTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGACCTTCAT
ATTCTGGAGCAGCTTAACAGGGCTACAACAAGTACGTCCTGGGCTCG
BS09380.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-PA | 954 | CG1907-RA | 1..884 | 17..900 | 4145 | 98.7 | Plus |
CG1907-PA | 954 | CG1907-RA | 904..933 | 918..947 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-RA | 1623 | CG1907-RA | 467..1399 | 17..947 | 4450 | 98.6 | Plus |
CG18418-RA | 1142 | CG18418-RA | 745..828 | 701..784 | 180 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29619721..29620534 | 136..947 | 3820 | 98.5 | Plus |
3R | 32079331 | 3R | 29619531..29619652 | 17..138 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:56:27 has no hits.
BS09380.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:51 Download gff for
BS09380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-PA | 1..933 | 17..947 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:01 Download gff for
BS09380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-PA | 1..933 | 17..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:25:19 Download gff for
BS09380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 464..1399 | 14..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:21 Download gff for
BS09380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 464..1399 | 14..947 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:21 Download gff for
BS09380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29619528..29619650 | 14..136 | 98 | -> | Plus |
3R | 29619722..29620534 | 137..947 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:25:19 Download gff for
BS09380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25445250..25445372 | 14..136 | 98 | -> | Plus |
arm_3R | 25445444..25446256 | 137..947 | 98 | | Plus |
BS09380.complete Sequence
986 bp (986 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636404
> BS09380.complete
GAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGA
AGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGA
ATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCAT
GCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGC
ACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAG
GGCATCGGAGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATT
GGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGA
GTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGT
GGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTC
CGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCA
ACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGA
GGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGACCCAACT
GGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGA
TGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTA
CTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCA
GAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACG
TCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGA
TTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGACCTTCAT
TATTCTGGAGCAGCTTAACCAGGGCTACAACAAGTACGTCCTGGGCTCGA
ACAAGAGCACTGGCCTGTAAAAGCTTTCTAGACCAT
BS09380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-RA | 954 | CG1907-PA | 1..954 | 17..970 | 4605 | 98.8 | Plus |
CG18418-RA | 936 | CG18418-PA | 664..747 | 701..784 | 180 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-RA | 1623 | CG1907-RA | 467..1421 | 17..971 | 4610 | 98.8 | Plus |
CG18418-RA | 1142 | CG18418-RA | 745..828 | 701..784 | 180 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29619721..29620556 | 136..971 | 4030 | 98.8 | Plus |
3R | 32079331 | 3R | 29619531..29619652 | 17..138 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:31:24 has no hits.
BS09380.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:23 Download gff for
BS09380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 1..954 | 17..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:46 Download gff for
BS09380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 495..1452 | 14..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:13 Download gff for
BS09380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 467..1418 | 17..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:23 Download gff for
BS09380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 495..1452 | 14..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:53 Download gff for
BS09380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1907-RA | 467..1418 | 17..968 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:53 Download gff for
BS09380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29619531..29619650 | 17..136 | 99 | -> | Plus |
3R | 29619722..29620553 | 137..968 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:13 Download gff for
BS09380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25445253..25445372 | 17..136 | 99 | -> | Plus |
arm_3R | 25445444..25446275 | 137..968 | 98 | | Plus |
BS09380.pep Sequence
Translation from 16 to 969
> BS09380.pep
MSATSVQEAPKKAVATNAIKFLFGGLSGMGATMVVQPLDLVKTRMQISGA
GSGKKEYRSSLHCIQTIVSKEGPLALYQGIGAALLRQATYTTGRLGMYTY
LNDLFREKFQRSPGITDSMAMGTIAGACGAFIGTPAEVALVRMTSDGRLP
VAERRNYTNVANALARITREEGLTALWRGSLPTVGRAMVVNMTQLASYSQ
FKTYFRHGPLQMEEGIKLHFCASMLSGLLTTITSMPLDIAKTRIQNMKMV
DGKPEYRGTADVLLRVARQEGVFALWKGFTPYYCRLGPHTVLTFIILEQL
NQGYNKYVLGSNKSTGL*
BS09380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1907-PA | 317 | CG1907-PA | 1..317 | 1..317 | 1619 | 100 | Plus |
CG18418-PA | 311 | CG18418-PA | 9..307 | 11..314 | 878 | 56.9 | Plus |
CG7514-PA | 301 | CG7514-PA | 16..301 | 21..317 | 841 | 56.2 | Plus |
Dic1-PC | 280 | CG8790-PC | 10..272 | 21..300 | 457 | 35 | Plus |
Dic1-PA | 280 | CG8790-PA | 10..272 | 21..300 | 457 | 35 | Plus |