Clone BS09380 Report

Search the DGRC for BS09380

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG1907-RA
Protein status:BS09380.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09380.3prime Sequence

897 bp (844 high quality bases) assembled on 2006-01-29

> BS09380.3prime
ATGGTCTAGAAAGCTTTTACAGGCCAGTGCTCTTGTTCGAGCCCAGGACG
TACTTGTTGTAGCCCTGGTTAAGCTGCTCCAGAATAATGAAGGTCAGCAC
GGTGTGGGGACCCAGGCGGCAGTAGTAGGGCGTGAATCCCTTCCACAGCG
CAAAGACTCCCTCCTGGCGGGCCACGCGCAGCAGGACGTCGGCGGTGCCG
CGGTACTCCGGCTTGCCATCGACCATCTTCATGTTCTGGATACGGGTCTT
GGCAATGTCCAGCGGCATGGAAGTGATGGTGGTCAGTAGACCGCTCAGCA
TGCTGGCGCAGAAGTGCAGCTTGATGCCCTCCTCCATCTGAAGGGGTCCG
TGGCGGAAGTAGGTCTTAAACTGCGAGTAGCTGGCCAGTTGGGTCATGTT
CACGACCATGGCGCGACCCACCGTGGGCAGACTGCCTCTCCACAGAGCCG
TAAGTCCCTCCTCCCTGGTGATCCTAGCCAGGGCGTTGGCCACATTAGTG
TAGTTCCTCCGCTCAGCCACCGGCAACCTGCCGTCGGAAGTCATGCGCAC
CAGGGCCACTTCCGCGGGCGTGCCAATAAAGGCGCCACATGCTCCGGCGA
TCGTGCCCATGGCCATGCTGTCCGTGATGCCGGGACTCCTCTGGAACTTC
TCCCTGAACAGGTCGTTCAGATACGTGTACATGCCCAATCTTCCCGTGGT
GTAGGTTGCCTGTCTCAGCAGAGCAGCTCCGATGCCCTGGTAAAGGGCCA
GAGGTCCTTCCTTGCTCACGATGGTCTGGATGCAGTGCAAGGAGCTGCGG
TACTCCTTCTTGCCACTGCCCGCTCCAGAAATCTGCATGCGGGTCTTGGA
CCAATCTAGCGGCTGCACCACCATGGTGGCTCCCATTCCGGAGAGGC

BS09380.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-PA 954 CG1907-RA 123..954 848..17 3910 98.7 Minus
CG1907-PA 954 CG1907-RA 74..116 897..855 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-RA 1623 CG1907-RA 540..1421 897..16 4215 98.6 Minus
CG18418-RA 1142 CG18418-RA 745..828 286..203 180 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 05:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29619724..29620556 848..16 4015 98.8 Minus
3R 32079331 3R 29619604..29619646 897..855 215 100 Minus
Blast to na_te.dros performed on 2015-02-01 05:03:12 has no hits.

BS09380.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:50 Download gff for BS09380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-PA 74..954 17..897 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:00 Download gff for BS09380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-PA 74..954 17..897 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:11:27 Download gff for BS09380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 540..1421 16..897 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:51:59 Download gff for BS09380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 540..1421 16..897 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:51:59 Download gff for BS09380.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29619604..29619650 852..897 97 -> Minus
3R 29619722..29620556 16..851 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:11:27 Download gff for BS09380.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25445326..25445372 852..897 97 -> Minus
arm_3R 25445444..25446278 16..851 98   Minus

BS09380.5prime Sequence

947 bp (843 high quality bases) assembled on 2006-01-29

> BS09380.5prime
GAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGA
AGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGA
ATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCAT
GCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGC
ACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAG
GGCATCGGAGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATT
GGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGA
GTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGT
GGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTC
CGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCA
ACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGA
GGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGACCCAACT
GGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGA
TGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTA
CTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCA
GAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACG
TCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGA
TTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGACCTTCAT
ATTCTGGAGCAGCTTAACAGGGCTACAACAAGTACGTCCTGGGCTCG

BS09380.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-PA 954 CG1907-RA 1..884 17..900 4145 98.7 Plus
CG1907-PA 954 CG1907-RA 904..933 918..947 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-RA 1623 CG1907-RA 467..1399 17..947 4450 98.6 Plus
CG18418-RA 1142 CG18418-RA 745..828 701..784 180 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29619721..29620534 136..947 3820 98.5 Plus
3R 32079331 3R 29619531..29619652 17..138 595 99.2 Plus
Blast to na_te.dros performed on 2015-02-10 22:56:27 has no hits.

BS09380.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:51 Download gff for BS09380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-PA 1..933 17..947 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:01 Download gff for BS09380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-PA 1..933 17..947 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:25:19 Download gff for BS09380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 464..1399 14..947 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:21 Download gff for BS09380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 464..1399 14..947 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:21 Download gff for BS09380.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29619528..29619650 14..136 98 -> Plus
3R 29619722..29620534 137..947 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:25:19 Download gff for BS09380.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25445250..25445372 14..136 98 -> Plus
arm_3R 25445444..25446256 137..947 98   Plus

BS09380.complete Sequence

986 bp (986 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636404

> BS09380.complete
GAAGTTATCAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGA
AGGCGGTGGCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGA
ATGGGAGCCACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCAT
GCAGATTTCTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGC
ACTGCATCCAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAG
GGCATCGGAGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATT
GGGCATGTACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGA
GTCCCGGCATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGT
GGCGCCTTTATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTC
CGACGGCAGGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCA
ACGCCCTGGCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGA
GGCAGTCTGCCCACGGTGGGTCGCGCCATGGTCGTGAACATGACCCAACT
GGCCAGCTACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGA
TGGAGGAGGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTA
CTGACCACCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCA
GAACATGAAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACG
TCCTGCTGCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGA
TTCACGCCCTACTACTGCCGCCTGGGTCCCCACACCGTGCTGACCTTCAT
TATTCTGGAGCAGCTTAACCAGGGCTACAACAAGTACGTCCTGGGCTCGA
ACAAGAGCACTGGCCTGTAAAAGCTTTCTAGACCAT

BS09380.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-RA 954 CG1907-PA 1..954 17..970 4605 98.8 Plus
CG18418-RA 936 CG18418-PA 664..747 701..784 180 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-RA 1623 CG1907-RA 467..1421 17..971 4610 98.8 Plus
CG18418-RA 1142 CG18418-RA 745..828 701..784 180 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29619721..29620556 136..971 4030 98.8 Plus
3R 32079331 3R 29619531..29619652 17..138 595 99.2 Plus
Blast to na_te.dros performed on 2014-11-26 15:31:24 has no hits.

BS09380.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:23 Download gff for BS09380.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 1..954 17..970 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:46 Download gff for BS09380.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 495..1452 14..971 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:13 Download gff for BS09380.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 467..1418 17..968 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:23 Download gff for BS09380.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 495..1452 14..971 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:53 Download gff for BS09380.complete
Subject Subject Range Query Range Percent Splice Strand
CG1907-RA 467..1418 17..968 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:53 Download gff for BS09380.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29619531..29619650 17..136 99 -> Plus
3R 29619722..29620553 137..968 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:13 Download gff for BS09380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25445253..25445372 17..136 99 -> Plus
arm_3R 25445444..25446275 137..968 98   Plus

BS09380.pep Sequence

Translation from 16 to 969

> BS09380.pep
MSATSVQEAPKKAVATNAIKFLFGGLSGMGATMVVQPLDLVKTRMQISGA
GSGKKEYRSSLHCIQTIVSKEGPLALYQGIGAALLRQATYTTGRLGMYTY
LNDLFREKFQRSPGITDSMAMGTIAGACGAFIGTPAEVALVRMTSDGRLP
VAERRNYTNVANALARITREEGLTALWRGSLPTVGRAMVVNMTQLASYSQ
FKTYFRHGPLQMEEGIKLHFCASMLSGLLTTITSMPLDIAKTRIQNMKMV
DGKPEYRGTADVLLRVARQEGVFALWKGFTPYYCRLGPHTVLTFIILEQL
NQGYNKYVLGSNKSTGL*

BS09380.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1907-PA 317 CG1907-PA 1..317 1..317 1619 100 Plus
CG18418-PA 311 CG18418-PA 9..307 11..314 878 56.9 Plus
CG7514-PA 301 CG7514-PA 16..301 21..317 841 56.2 Plus
Dic1-PC 280 CG8790-PC 10..272 21..300 457 35 Plus
Dic1-PA 280 CG8790-PA 10..272 21..300 457 35 Plus