Clone BS09381 Report

Search the DGRC for BS09381

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptMFS16-RA
Protein status:BS09381.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09381.3prime Sequence

874 bp (866 high quality bases) assembled on 2006-01-29

> BS09381.3prime
ATGGTCTAGAAAGCTTCTATTCAATCCGAATACGATGCGATGCACGACGC
AGTGCAGCGAACTCCTTGAAGACCAGTCGCCCCAGCAGCACCATGGCAAT
GATGTCGGCAGCGATGAGCATGTGGAAGACATACTGCCATCCAGCGGTGG
AGATAAGGCCGGCAAGCAGTGGCCCAACTGCCGCTCCGATTGACCCAGTA
CCATCGATAATGGCCGTCACCGTGGCCAGAGCATTGGCATTTCCCTCCAA
GGAGCTGTGCTGGCCCAGCTCTGCACTTACAGAGGTTGTAATCAGGGCAT
ATGGTCCGTTCACAAAGATGCCGACCACAATCAAGAGCACTATGCTGATT
GTCATCGACAATGCACCATATTGTTGATACATCAGCAGAATGGGCGAGGC
AACGAACAACATGCCTGTGCAGACGGTGGCCGACATTCCGCTCACATCTG
ATAGATAGCCCGCAGCTATTGCACCCAAAATACCACCCACATCGAAAAGA
GTGGACAAATCAGCGGACAGTTCTGGACCCAATGTGCTGGATTTTTGTAT
GTAAAGTGGCAGCCAGTACATGAAGGTGTAGCTCACCAGCTTGGTAAAGA
ACAAACACAGCGAAAACTCTACCACACCGGGTATGAATAAAGCATCGATC
AGACTGATGGGACGTCCGCGACCCCTTGGCACCGCCTCTGGTTGAGATCG
TGGAAGGATTGGAGTACGTTCGGTGGGAGCAGATCTATAGTTGATTTCCG
CATCGTTATGGCGCACCTGCTCCTCGTCGTCCTGTTCCACATCAGACTCG
TTGGCCACGCGACGCTCATGCTGTCCGGCTTGTGGATACAGCCCACAATC
TCCGGCTGATCCACTAGGAAAAGG

BS09381.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10069-PA 1587 CG10069-RA 766..1587 838..17 4060 99.7 Minus
CG10069-PB 1701 CG10069-RB 880..1701 838..17 4060 99.7 Minus
CG10069-PC 1587 CG10069-RC 766..1587 838..17 4060 99.7 Minus
CG10069-PA 1587 CG10069-RA 729..765 874..838 185 100 Minus
CG10069-PB 1701 CG10069-RB 843..879 874..838 185 100 Minus
CG10069-PC 1587 CG10069-RC 729..765 874..838 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RD 2281 CG10069-RD 970..1828 874..17 4240 99.7 Minus
MFS16-RC 2563 CG10069-RC 1252..2110 874..17 4240 99.7 Minus
MFS16-RB 2399 CG10069-RB 1088..1946 874..17 4240 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21284855..21285226 388..17 1830 99.5 Minus
2R 25286936 2R 21284381..21284593 749..537 1065 100 Minus
2R 25286936 2R 21284650..21284798 537..389 745 100 Minus
2R 25286936 2R 21283985..21284112 874..748 590 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 19:27:53 has no hits.

BS09381.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:52 Download gff for BS09381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PB 843..1701 17..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:03 Download gff for BS09381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PC 729..1587 17..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:14 Download gff for BS09381.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 1088..1949 14..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:29:10 Download gff for BS09381.3prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 1088..1949 14..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:29:10 Download gff for BS09381.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21283985..21284111 749..874 99 -> Minus
2R 21284382..21284592 538..748 100 -> Minus
2R 21284650..21284798 389..537 100 -> Minus
2R 21284855..21285229 14..388 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:14 Download gff for BS09381.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17171490..17171616 749..874 99 -> Minus
arm_2R 17171887..17172097 538..748 100 -> Minus
arm_2R 17172155..17172303 389..537 100 -> Minus
arm_2R 17172360..17172734 14..388 99   Minus

BS09381.5prime Sequence

843 bp (842 high quality bases) assembled on 2006-01-29

> BS09381.5prime
GAAGTTATCAGTCGACATGAGAGCTTCACTGGGATTGGGCAGAACGCGAA
AGATGAGCAATAACTACAACGACGTGCCATTCGGCATCCGGGCGGTGCAG
CGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCCCGCAGAGATTTGCT
CTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGCCTACGCCTGCTATC
ACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGGTGCTGCAAGGAAAC
TGTTCCACAGCGCTGGCTGCATCGGGTCAAGATTGTGGATATGCGCCCTT
TGATGTTCCCGATGCCACCACACTCTTTGGAATGCTGGACTCGGCCTTCC
TCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTTTCGTGGCGGAACGC
GTTTCCCTGCGATACTTCTTGTCCATGGGCATGATCCTCACCGGAGTGTT
CACCTACATGTTCGGCATTGCTCGCACCTCCAATATCCATAGCTTGTGGT
ATTTTATAATAGTGCAAATATTCGCTGGCATCTTCCAGACGACCGGATGG
CCAGGTGTAGTGGCCCTGGTGGGTCGTTGGTTTGGAAAGTCGAAACGCGG
GCTCATCTTTGGTATATGGAACAGTCATACGTCTATTGGAAACATTCTCG
GCACGCTGATAGCGGCGCATTATGTGGAATCCGATTGGGCGCTGTCGTTT
GTGGTACCCGGCATTATCATTGCAGCCGTTGGATTTTTACTCTTCCTTTT
CCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCCACAAGCCGGACAGC
ATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAACAGGACGA

BS09381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10069-PA 1587 CG10069-RA 1..827 17..843 3935 99 Plus
CG10069-PB 1701 CG10069-RB 115..941 17..843 3935 99 Plus
CG10069-PC 1587 CG10069-RC 1..827 17..843 3935 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RD 2281 CG10069-RD 242..1068 17..843 4015 99 Plus
MFS16-RC 2563 CG10069-RC 524..1350 17..843 4015 99 Plus
MFS16-RB 2399 CG10069-RB 360..1186 17..843 4015 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21283542..21284083 302..843 2620 98.9 Plus
2R 25286936 2R 21283331..21283482 151..302 745 99.3 Plus
2R 25286936 2R 21283079..21283212 17..150 655 99.3 Plus
Blast to na_te.dros performed on 2015-02-13 02:36:45 has no hits.

BS09381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:53 Download gff for BS09381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PB 111..940 11..842 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:04 Download gff for BS09381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10069-PC 1..826 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:44 Download gff for BS09381.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 356..1185 11..842 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:02 Download gff for BS09381.5prime
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 356..1185 11..842 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:02 Download gff for BS09381.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21283075..21283212 11..150 97 -> Plus
2R 21283331..21283482 151..302 99 -> Plus
2R 21283543..21284082 303..842 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:44 Download gff for BS09381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17170580..17170717 11..150 97 -> Plus
arm_2R 17170836..17170987 151..302 99 -> Plus
arm_2R 17171048..17171587 303..842 98   Plus

BS09381.complete Sequence

1619 bp (1619 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636405

> BS09381.complete
GAAGTTATCAGTCGACATGAGAGCTTCACTGGGATTGGGCAGAACGCGAA
AGATGAGCAATAACTACAACGACGTGCCATTCGGCATCCGGGCGGTGCAG
CGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCCCGCAGAGATTTGCT
CTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGCCTACGCCTGCTATC
ACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGGTGCTGCAAGGAAAC
TGTTCCACAGCGCTGGCTGCATCGGGTCAAGATTGTGGATATGCGCCCTT
TGATGTTCCCGATGCCACCACACTCTTTGGAATGCTGGACTCGGCCTTCC
TCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTTTCGTGGCGGAACGC
GTTTCCCTGCGATACTTCTTGTCCATGGGCATGATCCTCACCGGAGTGTT
CACCTACATGTTCGGCATTGCTCGCACCTCCAATATCCATAGCTTGTGGT
ATTTTATAATAGTGCAAATATTCGCTGGCATCTTCCAGACGACCGGATGG
CCAGGTGTAGTGGCCCTGGTGGGTCGTTGGTTTGGAAAGTCGAAACGCGG
GCTCATCTTTGGTATATGGAACAGTCATACGTCTATTGGAAACATTCTCG
GCACGCTGATAGCGGCGCATTATGTGGAATCCGATTGGGCGCTGTCGTTT
GTGGTACCCGGCATTATCATTGCAGCCGTTGGATTTTTACTCTTCCTTTT
CCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCCACAAGCCGGACAGC
ATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAACAGGACGACGAGGAG
CAGGTGCGCCATAACGATGCGGAAATCAACTATAGATCTGCTCCCACCGA
ACGTACTCCAATCCTTCCACGATCTCAACCAGAGGCGGTGCCAAGGGGTC
GCGGACGTCCCATCAGTCTGATCGATGCTTTATTCATACCCGGTGTGGTA
GAGTTTTCGCTGTGTTTGTTCTTTACCAAGCTGGTGAGCTACACCTTCAT
GTACTGGCTGCCACTTTACATACAAAAATCCAGCACATTGGGTCCAGAAC
TGTCCGCTGATTTGTCCACTCTTTTCGATGTGGGTGGTATTTTGGGTGCA
ATAGCTGCGGGCTATCTATCAGATGTGAGCGGAATGTCGGCCACCGTCTG
CACAGGCATGTTGTTCGTTGCCTCGCCCATTCTGCTGATGTATCAACAAT
ATGGTGCATTGTCGATGACAATCAGCATAGTGCTCTTGATTGTGGTCGGC
ATCTTTGTGAACGGACCATATGCCCTGATTACAACCTCTGTAAGTGCAGA
GCTGGGCCAGCACAGCTCCTTGGAGGGAAATGCCAATGCTCTGGCCACGG
TGACGGCCATTATCGATGGTACTGGGTCAATCGGAGCGGCAGTTGGGCCA
CTGCTTGCCGGCCTTATCTCCACCGCTGGATGGCAGTATGTCTTCCACAT
GCTCATCGCTGCCGACATCATTGCCATGGTGCTGCTGGGGCGACTGGTCT
TCAAGGAGTTCGCTGCACTGCGTCGTGCATCGCATCGTATTCGGATTGAA
TAGAAGCTTTCTAGACCAT

BS09381.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RD 1587 CG10069-PD 1..1587 17..1603 7785 99.4 Plus
MFS16-RC 1587 CG10069-PC 1..1587 17..1603 7785 99.4 Plus
MFS16-RB 1701 CG10069-PB 115..1701 17..1603 7785 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-RD 2281 CG10069-RD 242..1828 17..1603 7785 99.4 Plus
MFS16-RC 2563 CG10069-RC 524..2110 17..1603 7785 99.4 Plus
MFS16-RB 2399 CG10069-RB 360..1946 17..1603 7785 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21283542..21284112 302..872 2765 98.9 Plus
2R 25286936 2R 21284855..21285226 1232..1603 1830 99.5 Plus
2R 25286936 2R 21284381..21284593 871..1083 1065 100 Plus
2R 25286936 2R 21283331..21283482 151..302 745 99.3 Plus
2R 25286936 2R 21284650..21284798 1083..1231 745 100 Plus
2R 25286936 2R 21283079..21283212 17..150 655 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 07:46:17 has no hits.

BS09381.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:24 Download gff for BS09381.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RC 1..1587 17..1603 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:48 Download gff for BS09381.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RC 520..2113 11..1606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:18 Download gff for BS09381.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 360..1946 17..1603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:25 Download gff for BS09381.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RC 520..2113 11..1606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:23 Download gff for BS09381.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 360..1946 17..1603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:23 Download gff for BS09381.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21283079..21283212 17..150 99 -> Plus
2R 21283331..21283482 151..302 99 -> Plus
2R 21283543..21284111 303..871 98 -> Plus
2R 21284382..21284592 872..1082 100 -> Plus
2R 21284650..21284798 1083..1231 100 -> Plus
2R 21284855..21285226 1232..1603 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:18 Download gff for BS09381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17170584..17170717 17..150 99 -> Plus
arm_2R 17170836..17170987 151..302 99 -> Plus
arm_2R 17171048..17171616 303..871 98 -> Plus
arm_2R 17171887..17172097 872..1082 100 -> Plus
arm_2R 17172155..17172303 1083..1231 100 -> Plus
arm_2R 17172360..17172731 1232..1603 99   Plus

BS09381.pep Sequence

Translation from 16 to 1602

> BS09381.pep
MRASLGLGRTRKMSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSV
FVLTFLAYACYHMCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDA
TTLFGMLDSAFLFSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFG
IARTSNIHSLWYFIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGI
WNSHTSIGNILGTLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQP
EIVGCYPQAGQHERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPIL
PRSQPEAVPRGRGRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPL
YIQKSSTLGPELSADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLF
VASPILLMYQQYGALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHS
SLEGNANALATVTAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAAD
IIAMVLLGRLVFKEFAALRRASHRIRIE*

BS09381.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-PD 528 CG10069-PD 1..528 1..528 2702 100 Plus
MFS16-PC 528 CG10069-PC 1..528 1..528 2702 100 Plus
MFS16-PB 566 CG10069-PB 39..566 1..528 2702 100 Plus
MFS16-PA 528 CG10069-PA 1..528 1..528 2702 100 Plus