Clone Sequence Records
BS09381.3prime Sequence
874 bp (866 high quality bases) assembled on 2006-01-29
> BS09381.3prime
ATGGTCTAGAAAGCTTCTATTCAATCCGAATACGATGCGATGCACGACGC
AGTGCAGCGAACTCCTTGAAGACCAGTCGCCCCAGCAGCACCATGGCAAT
GATGTCGGCAGCGATGAGCATGTGGAAGACATACTGCCATCCAGCGGTGG
AGATAAGGCCGGCAAGCAGTGGCCCAACTGCCGCTCCGATTGACCCAGTA
CCATCGATAATGGCCGTCACCGTGGCCAGAGCATTGGCATTTCCCTCCAA
GGAGCTGTGCTGGCCCAGCTCTGCACTTACAGAGGTTGTAATCAGGGCAT
ATGGTCCGTTCACAAAGATGCCGACCACAATCAAGAGCACTATGCTGATT
GTCATCGACAATGCACCATATTGTTGATACATCAGCAGAATGGGCGAGGC
AACGAACAACATGCCTGTGCAGACGGTGGCCGACATTCCGCTCACATCTG
ATAGATAGCCCGCAGCTATTGCACCCAAAATACCACCCACATCGAAAAGA
GTGGACAAATCAGCGGACAGTTCTGGACCCAATGTGCTGGATTTTTGTAT
GTAAAGTGGCAGCCAGTACATGAAGGTGTAGCTCACCAGCTTGGTAAAGA
ACAAACACAGCGAAAACTCTACCACACCGGGTATGAATAAAGCATCGATC
AGACTGATGGGACGTCCGCGACCCCTTGGCACCGCCTCTGGTTGAGATCG
TGGAAGGATTGGAGTACGTTCGGTGGGAGCAGATCTATAGTTGATTTCCG
CATCGTTATGGCGCACCTGCTCCTCGTCGTCCTGTTCCACATCAGACTCG
TTGGCCACGCGACGCTCATGCTGTCCGGCTTGTGGATACAGCCCACAATC
TCCGGCTGATCCACTAGGAAAAGG
BS09381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10069-PA | 1587 | CG10069-RA | 766..1587 | 838..17 | 4060 | 99.7 | Minus |
CG10069-PB | 1701 | CG10069-RB | 880..1701 | 838..17 | 4060 | 99.7 | Minus |
CG10069-PC | 1587 | CG10069-RC | 766..1587 | 838..17 | 4060 | 99.7 | Minus |
CG10069-PA | 1587 | CG10069-RA | 729..765 | 874..838 | 185 | 100 | Minus |
CG10069-PB | 1701 | CG10069-RB | 843..879 | 874..838 | 185 | 100 | Minus |
CG10069-PC | 1587 | CG10069-RC | 729..765 | 874..838 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RD | 2281 | CG10069-RD | 970..1828 | 874..17 | 4240 | 99.7 | Minus |
MFS16-RC | 2563 | CG10069-RC | 1252..2110 | 874..17 | 4240 | 99.7 | Minus |
MFS16-RB | 2399 | CG10069-RB | 1088..1946 | 874..17 | 4240 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21284855..21285226 | 388..17 | 1830 | 99.5 | Minus |
2R | 25286936 | 2R | 21284381..21284593 | 749..537 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 21284650..21284798 | 537..389 | 745 | 100 | Minus |
2R | 25286936 | 2R | 21283985..21284112 | 874..748 | 590 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:27:53 has no hits.
BS09381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:52 Download gff for
BS09381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PB | 843..1701 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:03 Download gff for
BS09381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PC | 729..1587 | 17..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:55:14 Download gff for
BS09381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 1088..1949 | 14..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:29:10 Download gff for
BS09381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 1088..1949 | 14..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:29:10 Download gff for
BS09381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21283985..21284111 | 749..874 | 99 | -> | Minus |
2R | 21284382..21284592 | 538..748 | 100 | -> | Minus |
2R | 21284650..21284798 | 389..537 | 100 | -> | Minus |
2R | 21284855..21285229 | 14..388 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:55:14 Download gff for
BS09381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17171490..17171616 | 749..874 | 99 | -> | Minus |
arm_2R | 17171887..17172097 | 538..748 | 100 | -> | Minus |
arm_2R | 17172155..17172303 | 389..537 | 100 | -> | Minus |
arm_2R | 17172360..17172734 | 14..388 | 99 | | Minus |
BS09381.5prime Sequence
843 bp (842 high quality bases) assembled on 2006-01-29
> BS09381.5prime
GAAGTTATCAGTCGACATGAGAGCTTCACTGGGATTGGGCAGAACGCGAA
AGATGAGCAATAACTACAACGACGTGCCATTCGGCATCCGGGCGGTGCAG
CGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCCCGCAGAGATTTGCT
CTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGCCTACGCCTGCTATC
ACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGGTGCTGCAAGGAAAC
TGTTCCACAGCGCTGGCTGCATCGGGTCAAGATTGTGGATATGCGCCCTT
TGATGTTCCCGATGCCACCACACTCTTTGGAATGCTGGACTCGGCCTTCC
TCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTTTCGTGGCGGAACGC
GTTTCCCTGCGATACTTCTTGTCCATGGGCATGATCCTCACCGGAGTGTT
CACCTACATGTTCGGCATTGCTCGCACCTCCAATATCCATAGCTTGTGGT
ATTTTATAATAGTGCAAATATTCGCTGGCATCTTCCAGACGACCGGATGG
CCAGGTGTAGTGGCCCTGGTGGGTCGTTGGTTTGGAAAGTCGAAACGCGG
GCTCATCTTTGGTATATGGAACAGTCATACGTCTATTGGAAACATTCTCG
GCACGCTGATAGCGGCGCATTATGTGGAATCCGATTGGGCGCTGTCGTTT
GTGGTACCCGGCATTATCATTGCAGCCGTTGGATTTTTACTCTTCCTTTT
CCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCCACAAGCCGGACAGC
ATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAACAGGACGA
BS09381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10069-PA | 1587 | CG10069-RA | 1..827 | 17..843 | 3935 | 99 | Plus |
CG10069-PB | 1701 | CG10069-RB | 115..941 | 17..843 | 3935 | 99 | Plus |
CG10069-PC | 1587 | CG10069-RC | 1..827 | 17..843 | 3935 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RD | 2281 | CG10069-RD | 242..1068 | 17..843 | 4015 | 99 | Plus |
MFS16-RC | 2563 | CG10069-RC | 524..1350 | 17..843 | 4015 | 99 | Plus |
MFS16-RB | 2399 | CG10069-RB | 360..1186 | 17..843 | 4015 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21283542..21284083 | 302..843 | 2620 | 98.9 | Plus |
2R | 25286936 | 2R | 21283331..21283482 | 151..302 | 745 | 99.3 | Plus |
2R | 25286936 | 2R | 21283079..21283212 | 17..150 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:36:45 has no hits.
BS09381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:53 Download gff for
BS09381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PB | 111..940 | 11..842 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:04 Download gff for
BS09381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-PC | 1..826 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:13:44 Download gff for
BS09381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 356..1185 | 11..842 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:30:02 Download gff for
BS09381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 356..1185 | 11..842 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:30:02 Download gff for
BS09381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21283075..21283212 | 11..150 | 97 | -> | Plus |
2R | 21283331..21283482 | 151..302 | 99 | -> | Plus |
2R | 21283543..21284082 | 303..842 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:13:44 Download gff for
BS09381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17170580..17170717 | 11..150 | 97 | -> | Plus |
arm_2R | 17170836..17170987 | 151..302 | 99 | -> | Plus |
arm_2R | 17171048..17171587 | 303..842 | 98 | | Plus |
BS09381.complete Sequence
1619 bp (1619 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636405
> BS09381.complete
GAAGTTATCAGTCGACATGAGAGCTTCACTGGGATTGGGCAGAACGCGAA
AGATGAGCAATAACTACAACGACGTGCCATTCGGCATCCGGGCGGTGCAG
CGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCCCGCAGAGATTTGCT
CTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGCCTACGCCTGCTATC
ACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGGTGCTGCAAGGAAAC
TGTTCCACAGCGCTGGCTGCATCGGGTCAAGATTGTGGATATGCGCCCTT
TGATGTTCCCGATGCCACCACACTCTTTGGAATGCTGGACTCGGCCTTCC
TCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTTTCGTGGCGGAACGC
GTTTCCCTGCGATACTTCTTGTCCATGGGCATGATCCTCACCGGAGTGTT
CACCTACATGTTCGGCATTGCTCGCACCTCCAATATCCATAGCTTGTGGT
ATTTTATAATAGTGCAAATATTCGCTGGCATCTTCCAGACGACCGGATGG
CCAGGTGTAGTGGCCCTGGTGGGTCGTTGGTTTGGAAAGTCGAAACGCGG
GCTCATCTTTGGTATATGGAACAGTCATACGTCTATTGGAAACATTCTCG
GCACGCTGATAGCGGCGCATTATGTGGAATCCGATTGGGCGCTGTCGTTT
GTGGTACCCGGCATTATCATTGCAGCCGTTGGATTTTTACTCTTCCTTTT
CCTAGTGGATCAGCCGGAGATTGTGGGCTGTTATCCACAAGCCGGACAGC
ATGAGCGTCGCGTGGCCAACGAGTCTGATGTGGAACAGGACGACGAGGAG
CAGGTGCGCCATAACGATGCGGAAATCAACTATAGATCTGCTCCCACCGA
ACGTACTCCAATCCTTCCACGATCTCAACCAGAGGCGGTGCCAAGGGGTC
GCGGACGTCCCATCAGTCTGATCGATGCTTTATTCATACCCGGTGTGGTA
GAGTTTTCGCTGTGTTTGTTCTTTACCAAGCTGGTGAGCTACACCTTCAT
GTACTGGCTGCCACTTTACATACAAAAATCCAGCACATTGGGTCCAGAAC
TGTCCGCTGATTTGTCCACTCTTTTCGATGTGGGTGGTATTTTGGGTGCA
ATAGCTGCGGGCTATCTATCAGATGTGAGCGGAATGTCGGCCACCGTCTG
CACAGGCATGTTGTTCGTTGCCTCGCCCATTCTGCTGATGTATCAACAAT
ATGGTGCATTGTCGATGACAATCAGCATAGTGCTCTTGATTGTGGTCGGC
ATCTTTGTGAACGGACCATATGCCCTGATTACAACCTCTGTAAGTGCAGA
GCTGGGCCAGCACAGCTCCTTGGAGGGAAATGCCAATGCTCTGGCCACGG
TGACGGCCATTATCGATGGTACTGGGTCAATCGGAGCGGCAGTTGGGCCA
CTGCTTGCCGGCCTTATCTCCACCGCTGGATGGCAGTATGTCTTCCACAT
GCTCATCGCTGCCGACATCATTGCCATGGTGCTGCTGGGGCGACTGGTCT
TCAAGGAGTTCGCTGCACTGCGTCGTGCATCGCATCGTATTCGGATTGAA
TAGAAGCTTTCTAGACCAT
BS09381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RD | 1587 | CG10069-PD | 1..1587 | 17..1603 | 7785 | 99.4 | Plus |
MFS16-RC | 1587 | CG10069-PC | 1..1587 | 17..1603 | 7785 | 99.4 | Plus |
MFS16-RB | 1701 | CG10069-PB | 115..1701 | 17..1603 | 7785 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-RD | 2281 | CG10069-RD | 242..1828 | 17..1603 | 7785 | 99.4 | Plus |
MFS16-RC | 2563 | CG10069-RC | 524..2110 | 17..1603 | 7785 | 99.4 | Plus |
MFS16-RB | 2399 | CG10069-RB | 360..1946 | 17..1603 | 7785 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21283542..21284112 | 302..872 | 2765 | 98.9 | Plus |
2R | 25286936 | 2R | 21284855..21285226 | 1232..1603 | 1830 | 99.5 | Plus |
2R | 25286936 | 2R | 21284381..21284593 | 871..1083 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 21283331..21283482 | 151..302 | 745 | 99.3 | Plus |
2R | 25286936 | 2R | 21284650..21284798 | 1083..1231 | 745 | 100 | Plus |
2R | 25286936 | 2R | 21283079..21283212 | 17..150 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:17 has no hits.
BS09381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:24 Download gff for
BS09381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-RC | 1..1587 | 17..1603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:48 Download gff for
BS09381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-RC | 520..2113 | 11..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:18 Download gff for
BS09381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 360..1946 | 17..1603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:25 Download gff for
BS09381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10069-RC | 520..2113 | 11..1606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:23 Download gff for
BS09381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MFS16-RB | 360..1946 | 17..1603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:23 Download gff for
BS09381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21283079..21283212 | 17..150 | 99 | -> | Plus |
2R | 21283331..21283482 | 151..302 | 99 | -> | Plus |
2R | 21283543..21284111 | 303..871 | 98 | -> | Plus |
2R | 21284382..21284592 | 872..1082 | 100 | -> | Plus |
2R | 21284650..21284798 | 1083..1231 | 100 | -> | Plus |
2R | 21284855..21285226 | 1232..1603 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:18 Download gff for
BS09381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17170584..17170717 | 17..150 | 99 | -> | Plus |
arm_2R | 17170836..17170987 | 151..302 | 99 | -> | Plus |
arm_2R | 17171048..17171616 | 303..871 | 98 | -> | Plus |
arm_2R | 17171887..17172097 | 872..1082 | 100 | -> | Plus |
arm_2R | 17172155..17172303 | 1083..1231 | 100 | -> | Plus |
arm_2R | 17172360..17172731 | 1232..1603 | 99 | | Plus |
BS09381.pep Sequence
Translation from 16 to 1602
> BS09381.pep
MRASLGLGRTRKMSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSV
FVLTFLAYACYHMCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDA
TTLFGMLDSAFLFSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFG
IARTSNIHSLWYFIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGI
WNSHTSIGNILGTLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQP
EIVGCYPQAGQHERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPIL
PRSQPEAVPRGRGRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPL
YIQKSSTLGPELSADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLF
VASPILLMYQQYGALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHS
SLEGNANALATVTAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAAD
IIAMVLLGRLVFKEFAALRRASHRIRIE*
BS09381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MFS16-PD | 528 | CG10069-PD | 1..528 | 1..528 | 2702 | 100 | Plus |
MFS16-PC | 528 | CG10069-PC | 1..528 | 1..528 | 2702 | 100 | Plus |
MFS16-PB | 566 | CG10069-PB | 39..566 | 1..528 | 2702 | 100 | Plus |
MFS16-PA | 528 | CG10069-PA | 1..528 | 1..528 | 2702 | 100 | Plus |