Clone Sequence Records
BS09382.3prime Sequence
912 bp (844 high quality bases) assembled on 2006-01-29
> BS09382.3prime
ATGGTCTAGAAAGCTTCTAAAGCTGCGGCACAATGCCCCACGAGCGGAGC
AGTCCGGTGCGCTGGTACTTCTTGCCGATGGTCTGGACGTGGAAGCCGAT
CTGCTGCAGGCGCTCGTGGTCGAGAATCTTGCGGCCGTCGAAGATGTAGG
CTGGCTTCATCATCGATTGGTATATGCGCTTAAAGTCCAGATCAACAAAC
TCATCCCACTCCGTGCAGATGACCAACGCATGTGTGGCACGCACTGCGCT
GTACGGATCACTGTGGATCTGCACCGCCTTCTTCACCTTCTCCGGCGATT
CCGTGACACTGGGATGCGTGAGGTCATCGATGATCTGCTCGGGTTCCACC
TTCGGATCGTAGATATCCAGCGCGGCGCCCTCCTCCAGCAGAGTTTGGCA
CACGGTAATGGCGGCTGTTTCGCGCGTATCGCCCGTATTCTTCTTGAAGG
CAAAGCCCAGGATCGCTATCCGCTTGTCCGACACCGTGTTGAACAGACTC
TCGATGATTTTCTGCGAGAATCGACGCTTCTGGTACTCATTCATGTCGAT
CACCTGCTGCCAGTAGGCGGCCACCTCGGGCAGATTGAGGTTCTCGCAGA
TGTAAATCAGATTGAGGATGTCCTTCTGAAAGCAACTGCCGCCGAAGCCC
ACCGACGCCTGCAGGAACTTGGAACCGATGCGAGAGTCTAGACCCACGGC
CCTCGCCACCTCGGAAACATCTGCGCCCGTGGCCTCGCACACTGCCGACA
GCGAATTGATGCTGGAGATTCGCTGGGCGAGGAATGCGTTGGCCGCCAGC
TTAGACAGCTCGCTGCTCCACGTGTTCGTCGTGAGTATGTTCTGCTTGGG
TATCCAGTGCTCGTAGATCCACGACAGCTTCTCCACCGCCTGGTGGCCCT
CGGGCGTCTCCT
BS09382.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10072-PA | 1431 | sgl-RA | 536..1431 | 912..17 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-RA | 2275 | CG10072-RA | 748..1643 | 912..17 | 4480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6960186..6961081 | 17..912 | 4480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:27:55 has no hits.
BS09382.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:54 Download gff for
BS09382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-PA | 536..1431 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:07 Download gff for
BS09382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10072-PA | 536..1431 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:46:18 Download gff for
BS09382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 748..1645 | 13..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:28:30 Download gff for
BS09382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 748..1645 | 13..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:28:30 Download gff for
BS09382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6960182..6961081 | 13..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:46:18 Download gff for
BS09382.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6953282..6954181 | 13..912 | 99 | | Plus |
BS09382.5prime Sequence
885 bp (765 high quality bases) assembled on 2006-01-29
> BS09382.5prime
GAAGTTATCAGTCGACATGAAGGTCTGCTGCATTGGCGCTGGTTATGTCG
GCGGTCCGACCTGCGCGGTTATGGCGCTCAAATGCCCCGATATCGTGATA
ACTCTGGTGGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATTCGGATAA
GTTGCCCATTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCA
ATGTGAACCTCTTCTTCTCAACGGACATCGAGACGGCCATCAAGGAGGCG
GACCTCATCTTCATCTCGGTGAACACGCCCACAAAAACCTGCGGCAATGG
CAAGGGCCGAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCGCGGATGA
TCGCCGAGATCGCGCAGTCCAACAAGATTGTGGTGGAGAAGAGCACGGTG
CCCGTGCGGGCGGCGGAGAGCATCATGCACATACTGCGAGCGAACCAGAA
GCCGGGCATCCACTACGACATACTGTCCAATCCCGAGTTCCTCGCCGAGG
GCACCGCCATCAATGACCTGCTAAATGCGGATCGTGTGCTGATCGGCGGC
GAGGAGACGCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTA
CGAGCACTGGATACCCAAGCAGAACATACTCACGACGAACACGTGGAGCA
GCGAGCTGTCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCGAATCTCC
AGCATCAATTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTC
CGAGGTGGCGAGGGCCGTGGGTCTAGACTCTCGCATCGGTTCCAAGTTCC
TGCANGCGTCGGTGGGCTTCGGCGGCAGTTGCTTTCAGAAGGACATCCTC
AATCTGATTTACATCTGCGAGAACCCTCATCTGCC
BS09382.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10072-PA | 1431 | sgl-RA | 1..859 | 17..875 | 4276 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-RA | 2275 | CG10072-RA | 209..1081 | 13..885 | 4294 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6960748..6961328 | 885..305 | 2849 | 99.3 | Minus |
| 3L | 28110227 | 3L | 6964397..6964550 | 166..13 | 755 | 99.4 | Minus |
| 3L | 28110227 | 3L | 6961810..6961951 | 306..165 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:34:02 has no hits.
BS09382.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:07:55 Download gff for
BS09382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:08 Download gff for
BS09382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10072-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:50:27 Download gff for
BS09382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1081 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:58 Download gff for
BS09382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 206..1081 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:58 Download gff for
BS09382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6964397..6964553 | 9..166 | 98 | | Minus |
| 3L | 6960748..6961327 | 306..885 | 99 | <- | Minus |
| 3L | 6961811..6961949 | 167..305 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:50:27 Download gff for
BS09382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6953848..6954427 | 306..885 | 99 | <- | Minus |
| arm_3L | 6954911..6955049 | 167..305 | 100 | <- | Minus |
| arm_3L | 6957497..6957653 | 9..166 | 98 | | Minus |
BS09382.complete Sequence
1463 bp (1463 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636406
> BS09382.complete
GAAGTTATCAGTCGACATGAAGGTCTGCTGCATTGGCGCTGGTTATGTCG
GCGGTCCGACCTGCGCGGTTATGGCGCTCAAATGCCCCGATATCGTGATA
ACTCTGGTGGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATTCGGATAA
GTTGCCCATTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCA
ATGTGAACCTCTTCTTCTCAACGGACATCGAGACGGCCATCAAGGAGGCG
GACCTCATCTTCATCTCGGTGAACACGCCCACAAAAACCTGCGGCAATGG
CAAGGGCCGAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCGCGGATGA
TCGCCGAGATCGCGCAGTCCAACAAGATTGTGGTGGAGAAGAGCACGGTG
CCCGTGCGGGCGGCGGAGAGCATCATGCACATACTGCGAGCGAACCAGAA
GCCGGGCATCCACTACGACATACTGTCCAATCCCGAGTTCCTCGCCGAGG
GCACCGCCATCAATGACCTGCTAAATGCGGATCGTGTGCTGATCGGCGGC
GAGGAGACGCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTA
CGAGCACTGGATACCCAAGCAGAACATACTCACGACGAACACGTGGAGCA
GCGAGCTGTCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCGAATCTCC
AGCATCAATTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTC
CGAGGTGGCGAGGGCCGTGGGTCTAGACTCTCGCATCGGTTCCAAGTTCC
TGCAGGCGTCGGTGGGCTTCGGCGGCAGTTGCTTTCAGAAGGACATCCTC
AATCTGATTTACATCTGCGAGAACCTCAATCTGCCCGAGGTGGCCGCCTA
CTGGCAGCAGGTGATCGACATGAATGAGTACCAGAAGCGTCGATTCTCGC
AGAAAATCATCGAGAGTCTGTTCAACACGGTGTCGGACAAGCGGATAGCG
ATCCTGGGCTTTGCCTTCAAGAAGAATACGGGCGATACGCGCGAAACAGC
CGCCATTACCGTGTGCCAAACTCTGCTGGAGGAGGGCGCCGCGCTGGATA
TCTACGATCCGAAGGTGGAACCCGAGCAGATCATCGATGACCTCACGCAT
CCCAGTGTCACGGAATCGCCGGAGAAGGTGAAGAAGGCGGTGCAGATCCA
CAGTGATCCGTACAGCGCAGTGCGTGCCACACATGCGTTGGTCATCTGCA
CGGAGTGGGATGAGTTTGTTGATCTGGACTTTAAGCGCATATACCAATCG
ATGATGAAGCCAGCCTACATCTTCGACGGCCGCAAGATTCTCGACCACGA
GCGCCTGCAGCAGATCGGCTTCCACGTCCAGACCATCGGCAAGAAGTACC
AGCGCACCGGACTGCTCCGCTCGTGGGGCATTGTGCCGCAGCTTTAGAAG
CTTTCTAGACCAT
BS09382.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-RA | 1431 | CG10072-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-RA | 2275 | CG10072-RA | 209..1643 | 13..1447 | 7160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6960186..6961328 | 1447..305 | 5715 | 100 | Minus |
| 3L | 28110227 | 3L | 6964397..6964550 | 166..13 | 755 | 99.4 | Minus |
| 3L | 28110227 | 3L | 6961810..6961951 | 306..165 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:11:49 has no hits.
BS09382.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:26 Download gff for
BS09382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 1..1431 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:49 Download gff for
BS09382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 250..1689 | 9..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:36 Download gff for
BS09382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 213..1643 | 17..1447 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:26 Download gff for
BS09382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 250..1689 | 9..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:01 Download gff for
BS09382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgl-RA | 213..1643 | 17..1447 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:01 Download gff for
BS09382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6960186..6961327 | 306..1447 | 100 | <- | Minus |
| 3L | 6961811..6961949 | 167..305 | 100 | <- | Minus |
| 3L | 6964397..6964546 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:36 Download gff for
BS09382.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6953286..6954427 | 306..1447 | 100 | <- | Minus |
| arm_3L | 6954911..6955049 | 167..305 | 100 | <- | Minus |
| arm_3L | 6957497..6957646 | 17..166 | 100 | | Minus |
BS09382.pep Sequence
Translation from 16 to 1446
> BS09382.pep
MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYE
PGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAA
DLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHY
DILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIP
KQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARA
VGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI
DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVC
QTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKVKKAVQIHSDPYS
AVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQI
GFHVQTIGKKYQRTGLLRSWGIVPQL*
BS09382.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgl-PA | 476 | CG10072-PA | 1..476 | 1..476 | 2454 | 100 | Plus |
