Clone Sequence Records
BS09388.3prime Sequence
878 bp (854 high quality bases) assembled on 2006-01-29
> BS09388.3prime
ATGGTCTAGAAAGCTTTTAAGCGGGTCCACGGGACTCCAACTTGCACCAG
AACAGCTCCCGGGGCAGCAGTCGGAAACCGGAGATGCTGCTCATCATGTC
CGCCGGAGTGCGATCCGTAGGCTTCAGGTGGTAGCGCAGGACCAACTGGA
AGATCAGGGACTTCACCTCCATGAGAGCCAGCCGGTTGCCTATGCAGCTT
CGTTGGCCCACTCCAAAGGGCAGGTACGTGAACTGCCGGATCTCGTGCTT
GTGCTCCTCGTCAAAGCGCTCCGGTCGGAATTGCTCGGGTTCCGGGAAGT
TATCCGGGTCGTGATGAAGTGCCCCCACGTTGATGTGCACTAAGTCGTCC
TCCCGCAGGTTAACCACCACCTCGCCTTCCTCATCCTTCAACTGGAAATC
AGACCCACACATTCGATCCACGATGAACGCCGGTGGCCACTTTCTCAGCG
ACTCGGACACCACGCAGTTCAGATATTTCATGCCCATCAGGGTGTCGTAG
TCTAGTGGCTTCTCACCCAGCTGCTCCTTTACGGCCAGGATCTCCGCGAG
CAATTTTTCTTGCACTTCGGGGTTCATCATAAGTTCGTAGCTGGTGAAGC
TAAGGCAGGTGGCCACTGTTTCGAATCCTGCCGAGAAGAACAAGAGGCAC
TGGGCCAGCAAGTCGTCATCGTTGAATTCGGCCTTATCCTGCTGTGCTGC
ACTCTCCGCAGATCCTTCTTGCTCTGCCTTAAACTGTCTCTGCGCCTCCA
TCAGCAAATGAATCATATCGGGCCGCACGATACTCTGCTCCTTTCGATAC
TTCATGGCACCGAAGACCAGCTTTTTGAAGTAGTCCACGTTATTCATGTC
CATCACGGGGACCCGAAGTGCCTTCATC
BS09388.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3616-PA | 1569 | Cyp9c1-RA | 708..1569 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-RA | 1743 | CG3616-RA | 831..1692 | 878..17 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24632016..24632872 | 873..17 | 4285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:51:28 has no hits.
BS09388.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:09 Download gff for
BS09388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3616-PA | 708..1569 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:24 Download gff for
BS09388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3616-PA | 708..1569 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:09 Download gff for
BS09388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 831..1694 | 11..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:24 Download gff for
BS09388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 831..1694 | 11..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:24 Download gff for
BS09388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24632011..24632874 | 11..878 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:09 Download gff for
BS09388.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20519534..20520397 | 11..878 | 99 | | Minus |
BS09388.5prime Sequence
919 bp (814 high quality bases) assembled on 2006-01-29
> BS09388.5prime
GAAGTTATCAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCT
TCATCGGTTTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTC
TCGAAGAGGGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATAT
TCCGTGGTCGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTG
ACCTGCACTTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTG
CGGGATCCCCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGG
CATCAAGAACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAG
GATTCAACGATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGAT
CGTCGCTGGAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCT
CAAAATCCGACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGG
TGGACTTCGTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTA
AAGGACTTCTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTT
TGGCATCCAAGTGAATTCCTTCAAGGATCCCAACAACGAGTTCTTTTCCA
TCGGGCAGCGCATTTCAGAGTTTACTTTCTGGGGCGGACTCAAAGTAATG
CTATACATTCTGATGCCAAAATTGATGAAGGCACTTCGGGTCCCCGTGAT
GGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATGA
AGTATCGAAAGGAGCAGAGTATCGTGCGGCCCGATATGATTCATTTGCTG
ATGGAGGCGCAGAGACAGTTTAAGGCAGAGCAAGAAAGATCTGCGGAGAG
TGCAGCACAGCAGGATAAG
BS09388.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3616-PA | 1569 | Cyp9c1-RA | 1..903 | 17..919 | 4490 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-RA | 1743 | CG3616-RA | 123..1026 | 16..919 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24631422..24631960 | 193..731 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 24632016..24632206 | 729..919 | 940 | 99.5 | Plus |
2R | 25286936 | 2R | 24631185..24631364 | 16..195 | 900 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 17:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3044..3100 | 694..750 | 114 | 66.7 | Plus |
BS09388.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:10 Download gff for
BS09388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3616-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:26 Download gff for
BS09388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3616-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:30 Download gff for
BS09388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 116..1026 | 7..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:36 Download gff for
BS09388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 116..1026 | 7..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:36 Download gff for
BS09388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24632018..24632206 | 731..919 | 99 | | Plus |
2R | 24631178..24631364 | 7..195 | 97 | -> | Plus |
2R | 24631425..24631959 | 196..730 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:30 Download gff for
BS09388.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20518701..20518887 | 7..195 | 97 | -> | Plus |
arm_2R | 20518948..20519482 | 196..730 | 100 | -> | Plus |
arm_2R | 20519541..20519729 | 731..919 | 99 | | Plus |
BS09388.complete Sequence
1601 bp (1601 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636407
> BS09388.complete
GAAGTTATCAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCT
TCATCGGTTTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTC
TCGAAGAGGGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATAT
TCCGTGGTCGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTG
ACCTGCACTTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTG
CGGGATCCCCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGG
CATCAAGAACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAG
GATTCAACGATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGAT
CGTCGCTGGAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCT
CAAAATCCGACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGG
TGGACTTCGTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTA
AAGGACTTCTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTT
TGGCATCCAAGTGAATTCCTTCAAGGATCCCAACAACGAGTTCTTTTCCA
TCGGGCAGCGCATTTCAGAGTTTACTTTCTGGGGCGGACTCAAAGTAATG
CTATACATTCTGATGCCAAAATTGATGAAGGCACTTCGGGTCCCCGTGAT
GGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATGA
AGTATCGAAAGGAGCAGAGTATCGTGCGGCCCGATATGATTCATTTGCTG
ATGGAGGCGCAGAGACAGTTTAAGGCAGAGCAAGAAGGATCTGCGGAGAG
TGCAGCACAGCAGGATAAGGCCGAATTCAACGATGACGACTTGCTGGCCC
AGTGCCTCTTGTTCTTCTCGGCAGGATTCGAAACAGTGGCCACCTGCCTT
AGCTTCACCAGCTACGAACTTATGATGAACCCCGAAGTGCAAGAAAAATT
GCTCGCGGAGATCCTGGCCGTAAAGGAGCAGCTGGGTGAGAAGCCACTAG
ACTACGACACCCTGATGGGCATGAAATATCTGAACTGCGTGGTGTCCGAG
TCGCTGAGAAAGTGGCCACCGGCGTTCATCGTGGATCGAATGTGTGGGTC
TGATTTCCAGTTGAAGGATGAGGAAGGCGAGGTGGTGGTTAACCTGCGGG
AGGACGACTTAGTGCACATCAACGTGGGGGCACTTCATCACGACCCGGAT
AACTTCCCGGAACCCGAGCAATTCCGACCGGAGCGCTTTGACGAGGAGCA
CAAGCACGAGATCCGGCAGTTCACGTACCTGCCCTTTGGAGTGGGCCAAC
GAAGCTGCATAGGCAACCGGCTGGCTCTCATGGAGGTGAAGTCCCTGATC
TTCCAGTTGGTCCTGCGCTACCACCTGAAGCCTACGGATCGCACTCCGGC
GGACATGATGAGCAGCATCTCCGGTTTCCGACTGCTGCCCCGGGAGCTGT
TCTGGTGCAAGTTGGAGTCCCGTGGACCCGCTTAAAAGCTTTCTAGACCA
T
BS09388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-RA | 1569 | CG3616-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-RA | 1743 | CG3616-RA | 123..1692 | 16..1585 | 7850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24632016..24632872 | 729..1585 | 4285 | 100 | Plus |
2R | 25286936 | 2R | 24631422..24631960 | 193..731 | 2695 | 100 | Plus |
2R | 25286936 | 2R | 24631185..24631364 | 16..195 | 900 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3044..3100 | 694..750 | 114 | 66.7 | Plus |
BS09388.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:27 Download gff for
BS09388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 1..1569 | 17..1585 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:51 Download gff for
BS09388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 104..1682 | 7..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:42 Download gff for
BS09388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 124..1690 | 17..1583 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:27 Download gff for
BS09388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 104..1682 | 7..1591 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:13 Download gff for
BS09388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9c1-RA | 124..1690 | 17..1583 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:13 Download gff for
BS09388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24631186..24631364 | 17..195 | 100 | -> | Plus |
2R | 24631425..24631959 | 196..730 | 100 | -> | Plus |
2R | 24632018..24632870 | 731..1583 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:42 Download gff for
BS09388.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20518709..20518887 | 17..195 | 100 | -> | Plus |
arm_2R | 20518948..20519482 | 196..730 | 100 | -> | Plus |
arm_2R | 20519541..20520393 | 731..1583 | 100 | | Plus |
BS09388.pep Sequence
Translation from 16 to 1584
> BS09388.pep
MVFVELSIFVAFIGLLLYKWSVYTFGYFSKRGVAHEKPIPLLGNIPWSVL
MGKESYIKHSIDLHLRLKQHKVYGVFNLRDPLYYLSDPELIRQVGIKNFD
TFTNHRKGITEGFNDTSVISKSLLSLRDRRWKQMRSTLTPTFTSLKIRQM
FELIHFCNVEAVDFVQRQLDAGTSELELKDFFTRYTNDVIATAAFGIQVN
SFKDPNNEFFSIGQRISEFTFWGGLKVMLYILMPKLMKALRVPVMDMNNV
DYFKKLVFGAMKYRKEQSIVRPDMIHLLMEAQRQFKAEQEGSAESAAQQD
KAEFNDDDLLAQCLLFFSAGFETVATCLSFTSYELMMNPEVQEKLLAEIL
AVKEQLGEKPLDYDTLMGMKYLNCVVSESLRKWPPAFIVDRMCGSDFQLK
DEEGEVVVNLREDDLVHINVGALHHDPDNFPEPEQFRPERFDEEHKHEIR
QFTYLPFGVGQRSCIGNRLALMEVKSLIFQLVLRYHLKPTDRTPADMMSS
ISGFRLLPRELFWCKLESRGPA*
BS09388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9c1-PA | 522 | CG3616-PA | 1..522 | 1..522 | 2728 | 100 | Plus |
Cyp9h1-PA | 518 | CG17577-PA | 6..517 | 4..519 | 1332 | 50.1 | Plus |
Cyp9b2-PA | 505 | CG4486-PA | 1..504 | 1..519 | 1066 | 42 | Plus |
Cyp9f2-PA | 516 | CG11466-PA | 4..515 | 5..519 | 1063 | 42.4 | Plus |
Cyp9b1-PA | 505 | CG4485-PA | 1..504 | 1..519 | 1054 | 40.7 | Plus |