Clone BS09388 Report

Search the DGRC for BS09388

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCyp9c1-RA
Protein status:BS09388.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09388.3prime Sequence

878 bp (854 high quality bases) assembled on 2006-01-29

> BS09388.3prime
ATGGTCTAGAAAGCTTTTAAGCGGGTCCACGGGACTCCAACTTGCACCAG
AACAGCTCCCGGGGCAGCAGTCGGAAACCGGAGATGCTGCTCATCATGTC
CGCCGGAGTGCGATCCGTAGGCTTCAGGTGGTAGCGCAGGACCAACTGGA
AGATCAGGGACTTCACCTCCATGAGAGCCAGCCGGTTGCCTATGCAGCTT
CGTTGGCCCACTCCAAAGGGCAGGTACGTGAACTGCCGGATCTCGTGCTT
GTGCTCCTCGTCAAAGCGCTCCGGTCGGAATTGCTCGGGTTCCGGGAAGT
TATCCGGGTCGTGATGAAGTGCCCCCACGTTGATGTGCACTAAGTCGTCC
TCCCGCAGGTTAACCACCACCTCGCCTTCCTCATCCTTCAACTGGAAATC
AGACCCACACATTCGATCCACGATGAACGCCGGTGGCCACTTTCTCAGCG
ACTCGGACACCACGCAGTTCAGATATTTCATGCCCATCAGGGTGTCGTAG
TCTAGTGGCTTCTCACCCAGCTGCTCCTTTACGGCCAGGATCTCCGCGAG
CAATTTTTCTTGCACTTCGGGGTTCATCATAAGTTCGTAGCTGGTGAAGC
TAAGGCAGGTGGCCACTGTTTCGAATCCTGCCGAGAAGAACAAGAGGCAC
TGGGCCAGCAAGTCGTCATCGTTGAATTCGGCCTTATCCTGCTGTGCTGC
ACTCTCCGCAGATCCTTCTTGCTCTGCCTTAAACTGTCTCTGCGCCTCCA
TCAGCAAATGAATCATATCGGGCCGCACGATACTCTGCTCCTTTCGATAC
TTCATGGCACCGAAGACCAGCTTTTTGAAGTAGTCCACGTTATTCATGTC
CATCACGGGGACCCGAAGTGCCTTCATC

BS09388.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3616-PA 1569 Cyp9c1-RA 708..1569 878..17 4310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-RA 1743 CG3616-RA 831..1692 878..17 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24632016..24632872 873..17 4285 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:51:28 has no hits.

BS09388.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:09 Download gff for BS09388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3616-PA 708..1569 17..878 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:24 Download gff for BS09388.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3616-PA 708..1569 17..878 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:50:09 Download gff for BS09388.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 831..1694 11..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:24 Download gff for BS09388.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 831..1694 11..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:24 Download gff for BS09388.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24632011..24632874 11..878 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:50:09 Download gff for BS09388.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20519534..20520397 11..878 99   Minus

BS09388.5prime Sequence

919 bp (814 high quality bases) assembled on 2006-01-29

> BS09388.5prime
GAAGTTATCAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCT
TCATCGGTTTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTC
TCGAAGAGGGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATAT
TCCGTGGTCGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTG
ACCTGCACTTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTG
CGGGATCCCCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGG
CATCAAGAACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAG
GATTCAACGATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGAT
CGTCGCTGGAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCT
CAAAATCCGACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGG
TGGACTTCGTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTA
AAGGACTTCTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTT
TGGCATCCAAGTGAATTCCTTCAAGGATCCCAACAACGAGTTCTTTTCCA
TCGGGCAGCGCATTTCAGAGTTTACTTTCTGGGGCGGACTCAAAGTAATG
CTATACATTCTGATGCCAAAATTGATGAAGGCACTTCGGGTCCCCGTGAT
GGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATGA
AGTATCGAAAGGAGCAGAGTATCGTGCGGCCCGATATGATTCATTTGCTG
ATGGAGGCGCAGAGACAGTTTAAGGCAGAGCAAGAAAGATCTGCGGAGAG
TGCAGCACAGCAGGATAAG

BS09388.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3616-PA 1569 Cyp9c1-RA 1..903 17..919 4490 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-RA 1743 CG3616-RA 123..1026 16..919 4505 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24631422..24631960 193..731 2695 100 Plus
2R 25286936 2R 24632016..24632206 729..919 940 99.5 Plus
2R 25286936 2R 24631185..24631364 16..195 900 100 Plus
Blast to na_te.dros performed 2015-02-11 17:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3044..3100 694..750 114 66.7 Plus

BS09388.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:10 Download gff for BS09388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3616-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:26 Download gff for BS09388.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3616-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:10:30 Download gff for BS09388.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 116..1026 7..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:36 Download gff for BS09388.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 116..1026 7..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:36 Download gff for BS09388.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24632018..24632206 731..919 99   Plus
2R 24631178..24631364 7..195 97 -> Plus
2R 24631425..24631959 196..730 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:10:30 Download gff for BS09388.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20518701..20518887 7..195 97 -> Plus
arm_2R 20518948..20519482 196..730 100 -> Plus
arm_2R 20519541..20519729 731..919 99   Plus

BS09388.complete Sequence

1601 bp (1601 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636407

> BS09388.complete
GAAGTTATCAGTCGACATGGTTTTCGTGGAGTTGTCGATATTCGTAGCCT
TCATCGGTTTGCTATTGTACAAATGGTCCGTCTACACCTTCGGGTATTTC
TCGAAGAGGGGCGTGGCCCACGAAAAGCCAATTCCTCTGCTAGGAAATAT
TCCGTGGTCGGTGCTGATGGGTAAAGAGTCGTACATAAAACATAGCATTG
ACCTGCACTTGCGCCTGAAGCAGCACAAGGTCTATGGAGTCTTCAACCTG
CGGGATCCCCTATACTATCTCTCCGACCCGGAACTCATTCGCCAGGTGGG
CATCAAGAACTTCGATACCTTCACCAACCATCGCAAGGGGATAACTGAAG
GATTCAACGATACCAGCGTGATTTCCAAGAGCTTGCTCAGTCTGCGGGAT
CGTCGCTGGAAGCAAATGCGCAGCACCCTGACGCCTACTTTCACCAGCCT
CAAAATCCGACAGATGTTCGAGCTCATCCATTTCTGCAATGTAGAGGCGG
TGGACTTCGTGCAGCGCCAACTGGATGCCGGCACTTCCGAACTGGAGCTA
AAGGACTTCTTCACGCGCTACACCAACGACGTGATCGCGACGGCTGCCTT
TGGCATCCAAGTGAATTCCTTCAAGGATCCCAACAACGAGTTCTTTTCCA
TCGGGCAGCGCATTTCAGAGTTTACTTTCTGGGGCGGACTCAAAGTAATG
CTATACATTCTGATGCCAAAATTGATGAAGGCACTTCGGGTCCCCGTGAT
GGACATGAATAACGTGGACTACTTCAAAAAGCTGGTCTTCGGTGCCATGA
AGTATCGAAAGGAGCAGAGTATCGTGCGGCCCGATATGATTCATTTGCTG
ATGGAGGCGCAGAGACAGTTTAAGGCAGAGCAAGAAGGATCTGCGGAGAG
TGCAGCACAGCAGGATAAGGCCGAATTCAACGATGACGACTTGCTGGCCC
AGTGCCTCTTGTTCTTCTCGGCAGGATTCGAAACAGTGGCCACCTGCCTT
AGCTTCACCAGCTACGAACTTATGATGAACCCCGAAGTGCAAGAAAAATT
GCTCGCGGAGATCCTGGCCGTAAAGGAGCAGCTGGGTGAGAAGCCACTAG
ACTACGACACCCTGATGGGCATGAAATATCTGAACTGCGTGGTGTCCGAG
TCGCTGAGAAAGTGGCCACCGGCGTTCATCGTGGATCGAATGTGTGGGTC
TGATTTCCAGTTGAAGGATGAGGAAGGCGAGGTGGTGGTTAACCTGCGGG
AGGACGACTTAGTGCACATCAACGTGGGGGCACTTCATCACGACCCGGAT
AACTTCCCGGAACCCGAGCAATTCCGACCGGAGCGCTTTGACGAGGAGCA
CAAGCACGAGATCCGGCAGTTCACGTACCTGCCCTTTGGAGTGGGCCAAC
GAAGCTGCATAGGCAACCGGCTGGCTCTCATGGAGGTGAAGTCCCTGATC
TTCCAGTTGGTCCTGCGCTACCACCTGAAGCCTACGGATCGCACTCCGGC
GGACATGATGAGCAGCATCTCCGGTTTCCGACTGCTGCCCCGGGAGCTGT
TCTGGTGCAAGTTGGAGTCCCGTGGACCCGCTTAAAAGCTTTCTAGACCA
T

BS09388.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-RA 1569 CG3616-PA 1..1569 17..1585 7845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-RA 1743 CG3616-RA 123..1692 16..1585 7850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24632016..24632872 729..1585 4285 100 Plus
2R 25286936 2R 24631422..24631960 193..731 2695 100 Plus
2R 25286936 2R 24631185..24631364 16..195 900 100 Plus
Blast to na_te.dros performed 2014-11-27 13:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3044..3100 694..750 114 66.7 Plus

BS09388.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:27 Download gff for BS09388.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 1..1569 17..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:51 Download gff for BS09388.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 104..1682 7..1591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:42 Download gff for BS09388.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 124..1690 17..1583 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:27 Download gff for BS09388.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 104..1682 7..1591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:13 Download gff for BS09388.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9c1-RA 124..1690 17..1583 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:13 Download gff for BS09388.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24631186..24631364 17..195 100 -> Plus
2R 24631425..24631959 196..730 100 -> Plus
2R 24632018..24632870 731..1583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:42 Download gff for BS09388.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20518709..20518887 17..195 100 -> Plus
arm_2R 20518948..20519482 196..730 100 -> Plus
arm_2R 20519541..20520393 731..1583 100   Plus

BS09388.pep Sequence

Translation from 16 to 1584

> BS09388.pep
MVFVELSIFVAFIGLLLYKWSVYTFGYFSKRGVAHEKPIPLLGNIPWSVL
MGKESYIKHSIDLHLRLKQHKVYGVFNLRDPLYYLSDPELIRQVGIKNFD
TFTNHRKGITEGFNDTSVISKSLLSLRDRRWKQMRSTLTPTFTSLKIRQM
FELIHFCNVEAVDFVQRQLDAGTSELELKDFFTRYTNDVIATAAFGIQVN
SFKDPNNEFFSIGQRISEFTFWGGLKVMLYILMPKLMKALRVPVMDMNNV
DYFKKLVFGAMKYRKEQSIVRPDMIHLLMEAQRQFKAEQEGSAESAAQQD
KAEFNDDDLLAQCLLFFSAGFETVATCLSFTSYELMMNPEVQEKLLAEIL
AVKEQLGEKPLDYDTLMGMKYLNCVVSESLRKWPPAFIVDRMCGSDFQLK
DEEGEVVVNLREDDLVHINVGALHHDPDNFPEPEQFRPERFDEEHKHEIR
QFTYLPFGVGQRSCIGNRLALMEVKSLIFQLVLRYHLKPTDRTPADMMSS
ISGFRLLPRELFWCKLESRGPA*

BS09388.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9c1-PA 522 CG3616-PA 1..522 1..522 2728 100 Plus
Cyp9h1-PA 518 CG17577-PA 6..517 4..519 1332 50.1 Plus
Cyp9b2-PA 505 CG4486-PA 1..504 1..519 1066 42 Plus
Cyp9f2-PA 516 CG11466-PA 4..515 5..519 1063 42.4 Plus
Cyp9b1-PA 505 CG4485-PA 1..504 1..519 1054 40.7 Plus