Clone Sequence Records
BS09390.3prime Sequence
945 bp (845 high quality bases) assembled on 2006-01-29
> BS09390.3prime
ATGGTCTAGAAAGCTTCTAGGCCTCCAGCCCCCGGGTGTCCTTCAATGGC
TCCAGGGGCTGCAGGTTGACCGTCTTGTAGCCTCGATCCCGCCGGAACCA
GAGCCAGTTGTCCCCGTTGAAATAGTCCTCGATGTGCTCCAGGCTGCGGC
CCTTCGTCTCCGGCTGGAAAAGGCACATAAAGGCAGTGAGCAGGAAACTG
GACACGCCGAAGACCAGGAACACGCCGCGCATCTTGAGCATGGCCTGCAA
AGCGGGAAACTTCTTCGCGAAGATGAACAGAGCGACGTTCATGGAGGCAA
ACACTCCGCCGGCAGTCCGTCCGCGTATCCTAGCCGGGAAGAGCTCGCCG
ATCATAATGCCGGGCATCACCATCAGAGCCGTGTTGAAGATGATGTAGCC
CAAGAGACAGCCGGCACCAACGAATACGTCGTACGACATTTTCGGTTGAT
CGAATCTGGCATACTGATAGACACTGAGCACCAGGCAGAACAAGCCGGAG
CCGATTCCCGACACTATCATGATCCTGCGGCGGCGAACGAAGATCAGGAC
TACGCAGAAGACCATGCAGCAGATCACCCGGACAACTGCCGTCGCAATGG
CCGCCTGCTTGGAGTCGAACTCCGCTCCGAACTCCGAGATCATGTCCACG
GCATAGAAGATCACGATGAACGTGCCGGAGAACATCTGCAGCAGCGAGAA
CACGATCACAATGACCAGCGGCTTGATGGCCACGCGCTGGCAGCACAGCT
GGAAGATGTTCTCGTTCGTCTTGGTGGTCACCCGCTCCTTGGCCAGCCTC
TGCTTCATATCATTCAGCTCCTTCTGCGCACTGATCTCGCTGCCCCGCAG
GAACGAGAGGGCCTGCAGCGCACGCTTCTCGTGGCCATTGCGGAGTAGCC
AGGCCGGAGTCTCCGGTATAAACGAGATAGACACCATGGACAGCA
BS09390.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-PB | 1602 | CG4797-RB | 674..1602 | 945..17 | 4645 | 100 | Minus |
CG4797-PA | 1383 | CG4797-RA | 455..1383 | 945..17 | 4645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-RB | 2106 | CG4797-RB | 937..1865 | 945..17 | 4645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23812426..23813354 | 17..945 | 4645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:20:52 has no hits.
BS09390.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:11 Download gff for
BS09390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-PB | 675..1602 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:27 Download gff for
BS09390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-PA | 456..1383 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:50 Download gff for
BS09390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 938..1865 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:20 Download gff for
BS09390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 938..1865 | 17..944 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:20 Download gff for
BS09390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23812426..23813353 | 17..944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:50 Download gff for
BS09390.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19699949..19700876 | 17..944 | 100 | | Plus |
BS09390.5prime Sequence
916 bp (802 high quality bases) assembled on 2006-01-29
> BS09390.5prime
GAAGTTATCAGTCGACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCC
AGCTGATGGATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGC
TCCTGGATAGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCT
GTCGGGACCCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCT
CTGTGATTCCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGC
ATCAAGGTGGTGATCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAAT
TCTGGGTGGACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATC
TGCGGAGTCTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATC
CTAATGGTCTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTG
GTGCGCCAACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATAC
CGGAGACTCCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTG
CAGGCCCTCTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCT
GAATGATATGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGA
ACGAGAACATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTG
GTCATTGTGATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCAT
CGTGATCTTCTATGCCGTGGACATGATCTCGGAGTTCGGAGCGGAGTTCG
ACTCCCAGCANGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGC
ATGGTCTTCTGCGTAGTCCTGATCTTCGTTCGCCGCCGCAGGATCATGAT
AGTGTCGGGAATCGGC
BS09390.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-PB | 1602 | CG4797-RB | 219..1119 | 16..916 | 4286 | 99 | Plus |
CG4797-PA | 1383 | CG4797-RA | 1..900 | 17..916 | 4281 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-RB | 2106 | CG4797-RB | 482..1382 | 16..916 | 4374 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23812909..23813507 | 916..318 | 2939 | 99.3 | Minus |
2R | 25286936 | 2R | 23814322..23814535 | 322..109 | 995 | 97.7 | Minus |
2R | 25286936 | 2R | 23814596..23814690 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:47:49 has no hits.
BS09390.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:12 Download gff for
BS09390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-PB | 213..1119 | 7..916 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:29 Download gff for
BS09390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-PB | 213..1119 | 7..916 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:51 Download gff for
BS09390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 476..1382 | 7..916 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:18 Download gff for
BS09390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 476..1382 | 7..916 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:18 Download gff for
BS09390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23814325..23814533 | 111..319 | 97 | <- | Minus |
2R | 23814596..23814696 | 7..110 | 96 | | Minus |
2R | 23812909..23813505 | 320..916 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:51 Download gff for
BS09390.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19700432..19701028 | 320..916 | 99 | <- | Minus |
arm_2R | 19701848..19702056 | 111..319 | 97 | <- | Minus |
arm_2R | 19702119..19702219 | 7..110 | 96 | | Minus |
BS09390.complete Sequence
1415 bp (1415 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636408
> BS09390.complete
GAAGTTATCAGTCGACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCC
AGCTGATGGATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGC
TCCTGGATAGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCT
GTCGGGACCCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCT
CTGTGATTCCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGC
ATCAAGGTGGTGATCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAAT
TCTGGGTGGACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATC
TGCGGAGTCTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATC
CTAATGGTCTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTG
GTGCGCCAACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATAC
CGGAGACTCCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTG
CAGGCCCTCTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCT
GAATGATATGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGA
ACGAGAACATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTG
GTCATTGTGATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCAT
CGTGATCTTCTATGCCGTGGACATGATCTCGGAGTTCGGAGCGGAGTTCG
ACTCCAAGCAGGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGC
ATGGTCTTCTGCGTAGTCCTGATCTTCGTTCGCCGCCGCAGGATCATGAT
AGTGTCGGGAATCGGCTCCGGCTTGTTCTGCCTGGTGCTCAGTGTCTATC
AGTATGCCAGATTCGATCAACCGAAAATGTCGTACGACGTATTCGTTGGT
GCCGGCTGTCTCTTGGGCTACATCATCTTCAACACGGCTCTGATGGTGAT
GCCCGGCATTATGATCGGCGAGCTCTTCCCGGCTAGGATACGCGGACGGA
CTGCCGGCGGAGTGTTTGCCTCCATGAACGTCGCTCTGTTCATCTTCGCG
AAGAAGTTTCCCGCTTTGCAGGCCATGCTCAAGATGCGCGGCGTGTTCCT
GGTCTTCGGCGTGTCCAGTTTCCTGCTCACTGCCTTTATGTGCCTTTTCC
AGCCGGAGACGAAGGGCCGCAGCCTGGAGCACATCGAGGACTATTTCAAC
GGGGACAACTGGCTCTGGTTCCGGCGGGATCGAGGCTACAAGACGGTCAA
CCTGCAGCCCCTGGAGCCATTGAAGGACACCCGGGGGCTGGAGGCCTAGA
AGCTTTCTAGACCAT
BS09390.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-RB | 1602 | CG4797-PB | 219..1602 | 16..1399 | 6815 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-RB | 2106 | CG4797-RB | 482..1865 | 16..1399 | 6815 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23812426..23813507 | 1399..318 | 5380 | 99.8 | Minus |
2R | 25286936 | 2R | 23814322..23814535 | 322..109 | 995 | 97.7 | Minus |
2R | 25286936 | 2R | 23814596..23814690 | 110..16 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:47:30 has no hits.
BS09390.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:15 Download gff for
BS09390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 213..1602 | 7..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:35 Download gff for
BS09390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RA | 315..1704 | 7..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:09 Download gff for
BS09390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 483..1865 | 17..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:16 Download gff for
BS09390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RA | 315..1704 | 7..1399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:42 Download gff for
BS09390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4797-RB | 483..1865 | 17..1399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:42 Download gff for
BS09390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23812426..23813505 | 320..1399 | 99 | <- | Minus |
2R | 23814325..23814533 | 111..319 | 97 | <- | Minus |
2R | 23814596..23814689 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:09 Download gff for
BS09390.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19699949..19701028 | 320..1399 | 99 | <- | Minus |
arm_2R | 19701848..19702056 | 111..319 | 97 | <- | Minus |
arm_2R | 19702119..19702212 | 17..110 | 100 | | Minus |
BS09390.pep Sequence
Translation from 16 to 1398
> BS09390.pep
MPIGFSAILLPQLMDNNSTEIPIDVETGSWIASVHSLATPFGSLLSGPLA
DYLGRRRTLILSVIPLLLGWSTLAIAKSIKVVIFARFLCGFATGILGGPG
QVYIAETAEPNLRSLLIGAPYVAYSSGILMVYSLGSMMYWRSVAWCANVL
PLLSMVSISFIPETPAWLLRNGHEKRALQALSFLRGSEISAQKELNDMKQ
RLAKERVTTKTNENIFQLCCQRVAIKPLVIVIVFSLLQMFSGTFIVIFYA
VDMISEFGAEFDSKQAAIATAVVRVICCMVFCVVLIFVRRRRIMIVSGIG
SGLFCLVLSVYQYARFDQPKMSYDVFVGAGCLLGYIIFNTALMVMPGIMI
GELFPARIRGRTAGGVFASMNVALFIFAKKFPALQAMLKMRGVFLVFGVS
SFLLTAFMCLFQPETKGRSLEHIEDYFNGDNWLWFRRDRGYKTVNLQPLE
PLKDTRGLEA*
BS09390.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4797-PB | 533 | CG4797-PB | 74..533 | 1..460 | 2347 | 100 | Plus |
Tret1-2-PA | 488 | CG8234-PA | 48..466 | 5..424 | 565 | 31.4 | Plus |
Tret1-1-PB | 489 | CG30035-PB | 48..485 | 5..449 | 554 | 30.3 | Plus |
Tret1-1-PA | 857 | CG30035-PA | 416..853 | 5..449 | 554 | 30.3 | Plus |
CG8249-PC | 521 | CG8249-PC | 61..496 | 1..427 | 453 | 28.9 | Plus |