Clone BS09390 Report

Search the DGRC for BS09390

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:93
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG4797-RA
Protein status:BS09390.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09390.3prime Sequence

945 bp (845 high quality bases) assembled on 2006-01-29

> BS09390.3prime
ATGGTCTAGAAAGCTTCTAGGCCTCCAGCCCCCGGGTGTCCTTCAATGGC
TCCAGGGGCTGCAGGTTGACCGTCTTGTAGCCTCGATCCCGCCGGAACCA
GAGCCAGTTGTCCCCGTTGAAATAGTCCTCGATGTGCTCCAGGCTGCGGC
CCTTCGTCTCCGGCTGGAAAAGGCACATAAAGGCAGTGAGCAGGAAACTG
GACACGCCGAAGACCAGGAACACGCCGCGCATCTTGAGCATGGCCTGCAA
AGCGGGAAACTTCTTCGCGAAGATGAACAGAGCGACGTTCATGGAGGCAA
ACACTCCGCCGGCAGTCCGTCCGCGTATCCTAGCCGGGAAGAGCTCGCCG
ATCATAATGCCGGGCATCACCATCAGAGCCGTGTTGAAGATGATGTAGCC
CAAGAGACAGCCGGCACCAACGAATACGTCGTACGACATTTTCGGTTGAT
CGAATCTGGCATACTGATAGACACTGAGCACCAGGCAGAACAAGCCGGAG
CCGATTCCCGACACTATCATGATCCTGCGGCGGCGAACGAAGATCAGGAC
TACGCAGAAGACCATGCAGCAGATCACCCGGACAACTGCCGTCGCAATGG
CCGCCTGCTTGGAGTCGAACTCCGCTCCGAACTCCGAGATCATGTCCACG
GCATAGAAGATCACGATGAACGTGCCGGAGAACATCTGCAGCAGCGAGAA
CACGATCACAATGACCAGCGGCTTGATGGCCACGCGCTGGCAGCACAGCT
GGAAGATGTTCTCGTTCGTCTTGGTGGTCACCCGCTCCTTGGCCAGCCTC
TGCTTCATATCATTCAGCTCCTTCTGCGCACTGATCTCGCTGCCCCGCAG
GAACGAGAGGGCCTGCAGCGCACGCTTCTCGTGGCCATTGCGGAGTAGCC
AGGCCGGAGTCTCCGGTATAAACGAGATAGACACCATGGACAGCA

BS09390.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-PB 1602 CG4797-RB 674..1602 945..17 4645 100 Minus
CG4797-PA 1383 CG4797-RA 455..1383 945..17 4645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-RB 2106 CG4797-RB 937..1865 945..17 4645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23812426..23813354 17..945 4645 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:20:52 has no hits.

BS09390.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:11 Download gff for BS09390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-PB 675..1602 17..944 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:27 Download gff for BS09390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-PA 456..1383 17..944 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:25:50 Download gff for BS09390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 938..1865 17..944 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:27:20 Download gff for BS09390.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 938..1865 17..944 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:27:20 Download gff for BS09390.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23812426..23813353 17..944 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:25:50 Download gff for BS09390.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19699949..19700876 17..944 100   Plus

BS09390.5prime Sequence

916 bp (802 high quality bases) assembled on 2006-01-29

> BS09390.5prime
GAAGTTATCAGTCGACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCC
AGCTGATGGATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGC
TCCTGGATAGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCT
GTCGGGACCCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCT
CTGTGATTCCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGC
ATCAAGGTGGTGATCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAAT
TCTGGGTGGACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATC
TGCGGAGTCTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATC
CTAATGGTCTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTG
GTGCGCCAACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATAC
CGGAGACTCCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTG
CAGGCCCTCTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCT
GAATGATATGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGA
ACGAGAACATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTG
GTCATTGTGATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCAT
CGTGATCTTCTATGCCGTGGACATGATCTCGGAGTTCGGAGCGGAGTTCG
ACTCCCAGCANGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGC
ATGGTCTTCTGCGTAGTCCTGATCTTCGTTCGCCGCCGCAGGATCATGAT
AGTGTCGGGAATCGGC

BS09390.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-PB 1602 CG4797-RB 219..1119 16..916 4286 99 Plus
CG4797-PA 1383 CG4797-RA 1..900 17..916 4281 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-RB 2106 CG4797-RB 482..1382 16..916 4374 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23812909..23813507 916..318 2939 99.3 Minus
2R 25286936 2R 23814322..23814535 322..109 995 97.7 Minus
2R 25286936 2R 23814596..23814690 110..16 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:47:49 has no hits.

BS09390.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:12 Download gff for BS09390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-PB 213..1119 7..916 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:29 Download gff for BS09390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-PB 213..1119 7..916 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:44:51 Download gff for BS09390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 476..1382 7..916 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:18 Download gff for BS09390.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 476..1382 7..916 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:18 Download gff for BS09390.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23814325..23814533 111..319 97 <- Minus
2R 23814596..23814696 7..110 96   Minus
2R 23812909..23813505 320..916 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:44:51 Download gff for BS09390.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19700432..19701028 320..916 99 <- Minus
arm_2R 19701848..19702056 111..319 97 <- Minus
arm_2R 19702119..19702219 7..110 96   Minus

BS09390.complete Sequence

1415 bp (1415 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636408

> BS09390.complete
GAAGTTATCAGTCGACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCC
AGCTGATGGATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGC
TCCTGGATAGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCT
GTCGGGACCCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCT
CTGTGATTCCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGC
ATCAAGGTGGTGATCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAAT
TCTGGGTGGACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATC
TGCGGAGTCTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATC
CTAATGGTCTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTG
GTGCGCCAACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATAC
CGGAGACTCCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTG
CAGGCCCTCTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCT
GAATGATATGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGA
ACGAGAACATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTG
GTCATTGTGATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCAT
CGTGATCTTCTATGCCGTGGACATGATCTCGGAGTTCGGAGCGGAGTTCG
ACTCCAAGCAGGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGC
ATGGTCTTCTGCGTAGTCCTGATCTTCGTTCGCCGCCGCAGGATCATGAT
AGTGTCGGGAATCGGCTCCGGCTTGTTCTGCCTGGTGCTCAGTGTCTATC
AGTATGCCAGATTCGATCAACCGAAAATGTCGTACGACGTATTCGTTGGT
GCCGGCTGTCTCTTGGGCTACATCATCTTCAACACGGCTCTGATGGTGAT
GCCCGGCATTATGATCGGCGAGCTCTTCCCGGCTAGGATACGCGGACGGA
CTGCCGGCGGAGTGTTTGCCTCCATGAACGTCGCTCTGTTCATCTTCGCG
AAGAAGTTTCCCGCTTTGCAGGCCATGCTCAAGATGCGCGGCGTGTTCCT
GGTCTTCGGCGTGTCCAGTTTCCTGCTCACTGCCTTTATGTGCCTTTTCC
AGCCGGAGACGAAGGGCCGCAGCCTGGAGCACATCGAGGACTATTTCAAC
GGGGACAACTGGCTCTGGTTCCGGCGGGATCGAGGCTACAAGACGGTCAA
CCTGCAGCCCCTGGAGCCATTGAAGGACACCCGGGGGCTGGAGGCCTAGA
AGCTTTCTAGACCAT

BS09390.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-RB 1602 CG4797-PB 219..1602 16..1399 6815 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-RB 2106 CG4797-RB 482..1865 16..1399 6815 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23812426..23813507 1399..318 5380 99.8 Minus
2R 25286936 2R 23814322..23814535 322..109 995 97.7 Minus
2R 25286936 2R 23814596..23814690 110..16 475 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:47:30 has no hits.

BS09390.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:15 Download gff for BS09390.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 213..1602 7..1399 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:35 Download gff for BS09390.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RA 315..1704 7..1399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:09 Download gff for BS09390.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 483..1865 17..1399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:16 Download gff for BS09390.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RA 315..1704 7..1399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:42 Download gff for BS09390.complete
Subject Subject Range Query Range Percent Splice Strand
CG4797-RB 483..1865 17..1399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:42 Download gff for BS09390.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23812426..23813505 320..1399 99 <- Minus
2R 23814325..23814533 111..319 97 <- Minus
2R 23814596..23814689 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:09 Download gff for BS09390.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19699949..19701028 320..1399 99 <- Minus
arm_2R 19701848..19702056 111..319 97 <- Minus
arm_2R 19702119..19702212 17..110 100   Minus

BS09390.pep Sequence

Translation from 16 to 1398

> BS09390.pep
MPIGFSAILLPQLMDNNSTEIPIDVETGSWIASVHSLATPFGSLLSGPLA
DYLGRRRTLILSVIPLLLGWSTLAIAKSIKVVIFARFLCGFATGILGGPG
QVYIAETAEPNLRSLLIGAPYVAYSSGILMVYSLGSMMYWRSVAWCANVL
PLLSMVSISFIPETPAWLLRNGHEKRALQALSFLRGSEISAQKELNDMKQ
RLAKERVTTKTNENIFQLCCQRVAIKPLVIVIVFSLLQMFSGTFIVIFYA
VDMISEFGAEFDSKQAAIATAVVRVICCMVFCVVLIFVRRRRIMIVSGIG
SGLFCLVLSVYQYARFDQPKMSYDVFVGAGCLLGYIIFNTALMVMPGIMI
GELFPARIRGRTAGGVFASMNVALFIFAKKFPALQAMLKMRGVFLVFGVS
SFLLTAFMCLFQPETKGRSLEHIEDYFNGDNWLWFRRDRGYKTVNLQPLE
PLKDTRGLEA*

BS09390.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4797-PB 533 CG4797-PB 74..533 1..460 2347 100 Plus
Tret1-2-PA 488 CG8234-PA 48..466 5..424 565 31.4 Plus
Tret1-1-PB 489 CG30035-PB 48..485 5..449 554 30.3 Plus
Tret1-1-PA 857 CG30035-PA 416..853 5..449 554 30.3 Plus
CG8249-PC 521 CG8249-PC 61..496 1..427 453 28.9 Plus