Clone BS09407 Report

Search the DGRC for BS09407

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:7
Vector:pDNR-Dual
Associated Gene/Transcriptstv-RA
Protein status:BS09407.pep: full length peptide match
Sequenced Size:1862

Clone Sequence Records

BS09407.3prime Sequence

871 bp (867 high quality bases) assembled on 2006-04-19

> BS09407.3prime
ATGGTCTAGAAAGCTTTCATTCCGACGTCGTTGTGGTTGTCTCCGACTGA
ACGGCGGACTGTGTCGCCTCCGCGGCGGTGGCTTCCGAAGCAGCTGCGCC
CTCGACGGCAGCAGCATTTGGTGGTGCTGGTAGAGGGATGGGTTCCTGCA
TCTTTGTAGCATCCTGTGGCTGTGGAGTCACTGGCTCCGCATTTTGTCCG
GCCGCTTCCGAGGCAGCAACTGCACCTGTGTCAACCGCTGGAGCTGTTGC
GCTAGGTGCAGGTGCTGCTCCTGATGCCGCTCTGGCATTCTCCTCGGCCT
TGGCCTCCAGCACATTTATCGAAGCCTGAATGCATTTGATAGCCTCCTTT
CGGGCCAGACGAATGCTGTCCTTGCCGTTTGTGTCGATGGTGTCTAGCTT
AAGCAGGTTGCGGGTCAGCATCTCGTCCAGGTAGGCGTACTCCTTCTCCT
CGCGCGTTCCCTTGAACTGCTCCACCTTGCCCATGAGCTCCAGTACGTCG
CGCTGAATGTCCTGGATTTTGTTAATAGAGTTGAGGGTATGTGGTGTCTG
TGGCGGCAATCCAGCGGCTCCCTCAACTGGCACCTGCTGCTCAGGTTGCG
CCTGGGTGTTTAGTGGCGTCGGTCTGTTGTGCTGCTGTGGAGCAGCGTGT
GCCTGTGGCTGCGCCTGCGCATATGCCTGTGCCTGAGCTTGGGCCTGAGC
ACTGGGCGGAGCGTTCTGGTTCGGTATCTCCTTGTGGGCATTGATGATGG
GCTCGGAGCGACCCTCAACAAAGATGGGAATGGTGCGCACATAGGTGCCA
CCCGGGGTCTGTGGAGCTGGCGGCGGGGTCTGCTGCTTTTGCTGGGGATG
CGTCTGCTGGTGCGGCGCATA

BS09407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32130-PA 1830 CG32130-RA 976..1830 871..17 4275 100 Minus
CG32130-PB 1551 CG32130-RB 697..1551 871..17 4275 100 Minus
CG32130-PC 1629 CG32130-RC 775..1629 871..17 4275 100 Minus
CG32130-PD 1551 CG32130-RD 697..1551 871..17 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
stv-RG 2499 CG32130-RG 883..1737 871..17 4275 100 Minus
stv-RF 3282 CG32130-RF 1666..2520 871..17 4275 100 Minus
stv-RE 3357 CG32130-RE 1741..2595 871..17 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13481834..13482369 871..336 2680 100 Minus
3L 28110227 3L 13482435..13482753 335..17 1595 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:31:14 has no hits.

BS09407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:33 Download gff for BS09407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32130-PC 776..1629 17..870 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:17:58 Download gff for BS09407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32130-PD 698..1551 17..870 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:31:04 Download gff for BS09407.3prime
Subject Subject Range Query Range Percent Splice Strand
stv-RE 1742..2595 17..870 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:53:21 Download gff for BS09407.3prime
Subject Subject Range Query Range Percent Splice Strand
stv-RE 1742..2595 17..870 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:53:21 Download gff for BS09407.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13481835..13482369 336..870 100 -> Minus
3L 13482435..13482749 21..335 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:31:04 Download gff for BS09407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13474935..13475469 336..870 100 -> Minus
arm_3L 13475535..13475849 21..335 100 <- Minus

BS09407.5prime Sequence

944 bp (830 high quality bases) assembled on 2006-04-19

> BS09407.5prime
GAAGTTATCAGTCGACATGAAGCCCTCTGTGATGGCGGCCAATCAGGCGC
AAAGCAATCCCGCCACCGCCGCCGGTAATAATGTCTCACCCGGCGGTCCC
GGTGTCAATATACCCGTAAACCGGGAGTACGTGAGTGGCGGCTACGGATC
GCCACAGCAGTCGGCACAGTTCCACACTCCCCAAAACGCTTACGGATCGC
CCAGGCAGCAGCAGCAGCACTTCCAGCAGCACCAGCAGGTTCCTCCAAAT
CAGCAGCAGCAACATTTTCAGCCGACCTTTGGATTCGAACCGAACATGGA
CATGGACAACATGTTCCCGCGCTCGCACCTGGGCAGGATGCACGATCCCT
TCGCCGGCTTCGGCGACTCACACTTTGGTTTCCCCCGCTTCTCAACGATG
GGCCGCCGAGGTCGAATGGCCGGTGGGGCCAACACTCACATGGACCACGA
TGATGACTTCTTTAATCGGCTGCCCTCGGAGTTCCGCCAGTATATCCCAG
ATGGTTTCGGAGGCAGACGTGGTACCGGAGCTGCTCCTGCACCCGGACAA
GTTCCACAGCAGCAACAGCCGCAGCCACAGCCGCAGTACACCCAACAGCA
ACCCCAGACGCACTTCCAGTTCGGTGTGCCGCCCCAGCAACAGCCAGTCT
ATGCCGGACCAACCCAGCAGCAGGTGCCGCAGACGCCTTCAAAGCGCCTT
TGCGATGCTGCCATCCAGACGGAGGATCCTGCCGGTCGCTCGGAGGTTGA
TTGTGCCCCGCCGACTAACTTGAACCAGCACGGACTGCGAAACACTGTCG
ACATGGGCGTGAAGAGTGTCGCCGAGCAGGATCAGGGACTGCGATCCCAC
TCCGCCCCTCCGCCAGAGCAGCAGCAGCAGAATCTGCAGTATCACCAGCA
GCAGCAACAGCATCAGCCAACGGGAGTACATAGCCAAACGTTTT

BS09407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG32130-PA 1830 CG32130-RA 1..927 17..943 4535 99.5 Plus
CG32130-PB 1551 CG32130-RB 1..648 296..943 3165 99.5 Plus
CG32130-PD 1551 CG32130-RD 1..648 296..943 3165 99.5 Plus
CG32130-PC 1629 CG32130-RC 155..726 372..943 2785 99.4 Plus
CG32130-PC 1629 CG32130-RC 1..76 296..371 380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
stv-RA 3279 CG32130-RA 687..1614 16..943 4580 99.6 Plus
stv-RF 3282 CG32130-RF 687..1617 16..943 4540 99.2 Plus
stv-RG 2499 CG32130-RG 160..834 269..943 3330 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13481201..13481785 359..943 2820 98.8 Plus
3L 28110227 3L 13478227..13478482 16..271 1265 99.6 Plus
3L 28110227 3L 13481033..13481135 269..371 515 100 Plus
Blast to na_te.dros performed 2015-02-13 08:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6892 557..646 178 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6861 541..681 166 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6958 524..688 147 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6885 557..681 145 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6812..6950 557..695 136 57.1 Plus
roo 9092 roo DM_ROO 9092bp 1081..1160 524..602 136 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2416 557..612 135 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2378 554..607 133 75.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2866 529..612 132 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1095..1146 558..612 132 76.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2829 558..602 126 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6854 557..686 126 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6902 557..683 123 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6946 547..646 120 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1529..1584 547..602 118 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2412..2539 557..681 117 60.8 Plus

BS09407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:34 Download gff for BS09407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32130-PA 1..927 17..944 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:00 Download gff for BS09407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32130-PA 1..927 17..944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:27 Download gff for BS09407.5prime
Subject Subject Range Query Range Percent Splice Strand
stv-RA 681..1614 7..944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:26:41 Download gff for BS09407.5prime
Subject Subject Range Query Range Percent Splice Strand
stv-RA 681..1614 7..944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:26:41 Download gff for BS09407.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13478221..13478482 7..271 98 -> Plus
3L 13481036..13481135 272..371 100 -> Plus
3L 13481214..13481785 372..944 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:27 Download gff for BS09407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13471321..13471582 7..271 98 -> Plus
arm_3L 13474136..13474235 272..371 100 -> Plus
arm_3L 13474314..13474885 372..944 99   Plus

BS09407.complete Sequence

1862 bp assembled on 2010-07-01

GenBank Submission: KX804263

> BS09407.complete
GAAGTTATCAGTCGACATGAAGCCCACTGTGATGGCGGCCAATCAGGCGC
AAAGCAATCCCGCCACCGCCGCCGGTAATAATGTCTCACCCGGCGGTCCC
GGTGTCAATATACCCGTAAACCGGGAGTACGTGAGTGGCGGCTACGGATC
GCCACAGCAGTCGGCACAGTTCCACACTCCCCAAAACGCTTACGGATCGC
CCAGGCAGCAGCAGCAGCACTTCCAGCAGCACCAGCAGGTTCCTCCAAAT
CAGCAGCAGCAACATTTTCAGCCGACCTTTGGATTCGAACCGAACATGGA
CATGGACAACATGTTCCCGCGCTCGCACCTGGGCAGGATGCACGATCCCT
TCGCCGGCTTCGGCGACTCACACTTTGGTTTCCCCCGCTTCTCAACGATG
GGCCGCCGAGGTCGAATGGCCGGTGGGGCCAACACTCACATGGACCACGA
TGATGACTTCTTTAATCGGCTGCCCTCGGAGTTCCGCCAGTATATCCCAG
ATGGTTTCGGAGGCAGACGTGGTACCGGAGCTGCTCCTGCACCCGGACAA
GTTCCACAGCAGCAACAGCCGCAGCCACAGCCGCAGTACACCCAACAGCA
ACCCCAGACGCACTTCCAGTTCGGTGTGCCGCCCCAGCAACAGCCAGTCT
ATGCCGGACCAACCCAGCAGCAGGTGCCGCAGACGCCTTCAAAGCGCCTT
TGCGATGCTGCCATCCAGACGGAGGATCCTGCCGGTCGCTCGGAGGTTGA
TTGTGCCCCGCCGACTAACTTGAACCAGCACGGACTGCGAAACACTGTCG
ACATGGGCGTGAAGAGTGTCGCCGAGCAGGATCAGGGACTGCGATCCCAC
TCCGCCCCTCCGCCAGAGCAGCAGCAGCAGAATCTGCAGTATCACCAGCA
GCAGCAACAGCATCAGCAACCGGGAGTACATAGCCAACCGTTTGGCACCC
AGACAAGTCCGCCCGTTCAGGGTCAGCAGTTCAAGACCTACTATGCGCCG
CACCAGCAGACGCATCCCCAGCAAAAGCAGCAGACCCCGCCGCCAGCTCC
ACAGACCCCGGGTGGCACCTATGTGCGCACCATTCCCATCTTTGTTGAGG
GTCGCTCCGAGCCCATCATCAATGCCCACAAGGAGATACCGAACCAGAAC
GCTCCGCCCAGTGCTCAGGCCCAAGCTCAGGCACAGGCATATGCGCAGGC
GCAGCCACAGGCACACGCTGCTCCACAGCAGCACAACAGACCGACGCCAC
TAAACACCCAGGCGCAACCTGAGCAGCAGGTGCCAGTTGAGGGAGCCGCT
GGATTGCCGCCACAGACACCACATACCCTCAACTCTATTAACAAAATCCA
GGACATTCAGCGCGACGTACTGGAGCTCATGGGCAAGGTGGAGCAGTTCA
AGGGAACGCGCGAGGAGAAGGAGTACGCCTACCTGGACGAGATGCTGACC
CGCAACCTGCTTAAGCTAGACACCATCGACACAAACGGCAAGGACAGCAT
TCGTCTGGCCCGAAAGGAGGCTATCAAATGCATTCAGGCTTCGATAAATG
TGCTGGAGGCCAAGGCCGAGGAGAATGCCAGAGCGGCATCAGGAGCAGCA
CCTGCACCTAGCGCAACAGCTCCAGCGGTTGACACAGGTGCAGTTGCTGC
CTCGGAAGCGGCCGGACAAAATGCGGAGCCAGTGACTCCACAGCCACAGG
ATGCTACAAAGATGCAGGAACCCATCCCTCTACCAGCACCACCAAATGCT
GCTGCCGTCGAGGGCGCAGCTGCTTCGGAAGCCACCGCCGCGGAGGCGAC
ACAGTCCGCCGTTCAGTCGGAGACAACCACAACGACGTCGGAATGAAAGC
TTTCTAGACCAT

BS09407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
stv-RA 1830 CG32130-PA 1..1830 17..1846 9150 100 Plus
stv-RF 1833 CG32130-PF 1..1833 17..1846 9085 99.8 Plus
stv-RG 1551 CG32130-PG 1..1551 296..1846 7755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
stv-RA 3279 CG32130-RA 687..2517 16..1846 9155 100 Plus
stv-RF 3282 CG32130-RF 687..2520 16..1846 9090 99.8 Plus
stv-RG 2499 CG32130-RG 160..1737 269..1846 7890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13481201..13482369 359..1527 5785 99.7 Plus
3L 28110227 3L 13482435..13482753 1528..1846 1595 100 Plus
3L 28110227 3L 13478227..13478482 16..271 1280 100 Plus
3L 28110227 3L 13481033..13481135 269..371 515 100 Plus
Blast to na_te.dros performed 2014-11-27 07:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6800..6892 557..646 178 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6861 541..681 166 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6958 524..688 147 57.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6885 557..681 145 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6812..6950 557..695 136 57.1 Plus
roo 9092 roo DM_ROO 9092bp 1081..1160 524..602 136 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2358..2416 557..612 135 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2378 554..607 133 75.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2866 529..612 132 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1095..1146 558..612 132 76.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6854 557..686 126 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2829 558..602 126 75.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6841..6946 547..646 120 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1529..1584 547..602 118 67.9 Plus

BS09407.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 11:22:04 Download gff for BS09407.complete
Subject Subject Range Query Range Percent Splice Strand
stv-RA 676..2504 17..1845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:38 Download gff for BS09407.complete
Subject Subject Range Query Range Percent Splice Strand
stv-RA 688..2516 17..1845 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:03 Download gff for BS09407.complete
Subject Subject Range Query Range Percent Splice Strand
stv-RA 688..2516 17..1845 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:03 Download gff for BS09407.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13478228..13478482 17..271 100 -> Plus
3L 13481036..13481135 272..371 100 -> Plus
3L 13481214..13482369 372..1527 100 -> Plus
3L 13482435..13482752 1528..1845 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:38 Download gff for BS09407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13471328..13471582 17..271 100 -> Plus
arm_3L 13474136..13474235 272..371 100 -> Plus
arm_3L 13474314..13475469 372..1527 100 -> Plus
arm_3L 13475535..13475852 1528..1845 100   Plus

BS09407.pep Sequence

Translation from 16 to 1845

> BS09407.pep
MKPTVMAANQAQSNPATAAGNNVSPGGPGVNIPVNREYVSGGYGSPQQSA
QFHTPQNAYGSPRQQQQHFQQHQQVPPNQQQQHFQPTFGFEPNMDMDNMF
PRSHLGRMHDPFAGFGDSHFGFPRFSTMGRRGRMAGGANTHMDHDDDFFN
RLPSEFRQYIPDGFGGRRGTGAAPAPGQVPQQQQPQPQPQYTQQQPQTHF
QFGVPPQQQPVYAGPTQQQVPQTPSKRLCDAAIQTEDPAGRSEVDCAPPT
NLNQHGLRNTVDMGVKSVAEQDQGLRSHSAPPPEQQQQNLQYHQQQQQHQ
QPGVHSQPFGTQTSPPVQGQQFKTYYAPHQQTHPQQKQQTPPPAPQTPGG
TYVRTIPIFVEGRSEPIINAHKEIPNQNAPPSAQAQAQAQAYAQAQPQAH
AAPQQHNRPTPLNTQAQPEQQVPVEGAAGLPPQTPHTLNSINKIQDIQRD
VLELMGKVEQFKGTREEKEYAYLDEMLTRNLLKLDTIDTNGKDSIRLARK
EAIKCIQASINVLEAKAEENARAASGAAPAPSATAPAVDTGAVAASEAAG
QNAEPVTPQPQDATKMQEPIPLPAPPNAAAVEGAAASEATAAEATQSAVQ
SETTTTTSE*

BS09407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
stv-PA 609 CG32130-PA 1..609 1..609 3240 100 Plus
stv-PF 610 CG32130-PF 1..610 1..609 3228 99.8 Plus
stv-PE 635 CG32130-PE 1..635 1..609 3195 95.7 Plus
stv-PG 516 CG32130-PG 1..516 94..609 2731 100 Plus
stv-PD 516 CG32130-PD 1..516 94..609 2731 100 Plus