Clone BS09409 Report

Search the DGRC for BS09409

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG8818-RA
Protein status:BS09409.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS09409.3prime Sequence

917 bp (765 high quality bases) assembled on 2006-04-19

> BS09409.3prime
ATGGTCTAGAAAGCTTCTAGAACTTGTACTGGAAGGACTTGGGTGCCTTG
TACTTGCTGGCCATTCCCGAAGAGTCCACAGGATCGCTCTGGTCGAGGAA
CAGACTGAGGAACTGTTCGTTCTGCAGCTCATTTAGCGGCATCTCTAATT
CACTGCAGGATTTGACAATCTCAGCGCAGGCTCGCAGATCCTTGCGCATA
TATTGATAGTTAAAGAGCAAGCTGAGGCAGCTGGAGCAGGCCAAACGCTG
CTGGTGCTGCAAGAACGCCTCGATTAGCCGATGCACCGCATCAACATTGT
TACGGGCCAGAAATGAAGAGCACAAAGAACTGGCTCTCCTCTCCACTAGC
TCTTGCAGCTCCTTGTAGTGCTCAAACAGTTCCGAAGCCGATTTTTGATC
GCAAAACCAATCGCTAGCGAAGCATTGCTTCCACACACAGGCCACCACAA
AGATGTCCTTGTGCTCGCGGTGAATGGCACGCGCTACCTCCAGCAGCGAC
ACTAGCACCGCCTCACTCTTCTGGGCCAGAGTCTCCTCGGAAATGGTGCG
GAATGCGGAGCGCGCCATCCGCCTGCCCTCCTCCGAAGTCATGCTTACCC
CGTAACCGCGATGTAGCGTCATCAGGGCCACGTCGGCGTTACCATTGTTC
CACAGGGCGATGGCGCGGAAGGGCGCCAGATCCGCGTAGGTCTGTGAGAA
CGGGTGCTCCAGCTGCCGACAGGTCTCCGCCAGTGCCTCCAACTGCTGGA
GCTTGCGCTGCGCGCTCAAATACTTTAGACAGGACACGAAGACCTCGTTG
GAGGGCAACAGGTTGCAGCGGATGCACTGACGTATCANGTAGAGAAAGTC
CAGCTTGTTCTTGATCTCCAACGTGGCCATCAGCAGGTTGTCCAGCTGCG
CCTGCGACAGGGATCTG

BS09409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-PA 1290 CG8818-RA 390..1290 917..17 4486 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-RA 1535 CG8818-RA 495..1395 917..17 4494 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12517837..12518418 336..917 2899 99.8 Plus
2R 25286936 2R 12517404..12517588 17..201 925 100 Plus
2R 25286936 2R 12517641..12517776 202..337 680 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:29:03 has no hits.

BS09409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:37 Download gff for BS09409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8818-PA 390..1290 17..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:05 Download gff for BS09409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8818-PA 390..1290 17..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:27:37 Download gff for BS09409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 495..1395 17..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:27 Download gff for BS09409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 495..1395 17..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:27 Download gff for BS09409.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12517641..12517774 202..335 100 <- Plus
2R 12517404..12517588 17..201 100 <- Plus
2R 12517837..12518418 336..917 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:27:37 Download gff for BS09409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8404909..8405093 17..201 100 <- Plus
arm_2R 8405146..8405279 202..335 100 <- Plus
arm_2R 8405342..8405923 336..917 99   Plus

BS09409.5prime Sequence

923 bp (800 high quality bases) assembled on 2006-04-19

> BS09409.5prime
GAAGTTATCAGTCGACATGGCCATGCTGACGCGATTGACCAGCAGCGGCA
CCACCACGGTGGCCGGAGCACCCGGTTCACCCAAGGGCCTGCAGCGTTTC
CAAAACTACATCTCGGCCTTCTTGTGGCCGGGAACGCAGCGGCAACGTCG
GAAGTCCACACATCTCGATCCCATGGACTGTTTCACCAACGACTTGGTGA
CCAGAAAGACCCAAAAGTGGGAGGAGCTGCGCGATAGCCTGATAAAGAGG
CCATCGTCCGGAAATCTGGAGGCGGACGCCAATTGCAATGTGGGAACGCA
GCGAAAGGCTGGTAGTACCAGCTTTAGCCAGAACGTGGGTCTTATGTCCA
AGGGCATGATGAGTGATCTGAAGGCGCTGCGCTCCCCCCAACTGGGACTG
GATATCAGATCCCTGTCGCAGGCGCAGCTGGACAACCTGCTGATGGCCAC
GTTGGAGATCAAGAACAAGCTGGACTTTCTCTACCTGATACGTCAGTGCA
TCCGCTGCAACCTGTTGCCCTCCAACGAGGTCTTCGTGTCCTGTCTAAAG
TATTTGAGCGCGCAGCGCAAGCTCCAGCAGTTGGAGGCACTGGCGGAGAC
CTGTCGGCAGCTGGAGCACCCGTTCTCACAGACCTACGCGGATCTGGCGC
CCTTCCGCGCCATCGCCCTGTGGAACAATGGTAACGCCGACGTGGCCCTG
ATGACGCTACATCGCGGTTACGGGGTAAGCATGACTTCGGAGGAGGGCAG
GCGGATGGCGCGCTCCGCATTCCGCACCATTTCCGAGGAGACTCTGGCCC
AGAAGAGTGAGGCGGTGCTAGTGTCGCTGCTGGAGGTAGCGCGTGCCATT
CACCGCGAGCACAAGGACATCTTTGTGGTGGCCTGTGTGTGGGAGCAATG
CTTCGCTAGCGATTGGTTTTGCG

BS09409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-PA 1290 CG8818-RA 1..907 17..923 4510 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-RA 1535 CG8818-RA 105..1012 16..923 4525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12517901..12518808 923..16 4525 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 15:11:01 has no hits.

BS09409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:38 Download gff for BS09409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8818-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:07 Download gff for BS09409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8818-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:16:09 Download gff for BS09409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 102..1012 10..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:06 Download gff for BS09409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 102..1012 10..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:06 Download gff for BS09409.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12517901..12518811 10..923 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:16:09 Download gff for BS09409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8405406..8406316 10..923 99   Minus

BS09409.complete Sequence

1322 bp (1322 high quality bases) assembled on 2006-02-16

GenBank Submission: FJ636409

> BS09409.complete
GAAGTTATCAGTCGACATGGCCATGCTGACGCGATTGACCAGCAGCGGCA
CCACCACGGTGGCCGGAGCACCCGGTTCACCCAAGGGCCTGCAGCGTTTC
CAAAACTACATCTCGGCCTTCTTGTGGCCGGGAACGCAGCGGCAACGTCG
GAAGTCCACACATCTCGATCCCATGGACTGTTTCACCAACGACTTGGTGA
CCAGAAAGACCCAAAAGTGGGAGGAGCTGCGCGATAGCCTGATAAAGAGG
CCATCGTCCGGAAATCTGGAGGCGGACGCCAATTGCAATGTGGGAACGCA
GCGAAAGGCTGGTAGTACCAGCTTTAGCCAGAACGTGGGTCTTATGTCCA
AGGGCATGATGAGTGATCTGAAGGCGCTGCGCTCCCCCCAACTGGGACTG
GATATCAGATCCCTGTCGCAGGCGCAGCTGGACAACCTGCTGATGGCCAC
GTTGGAGATCAAGAACAAGCTGGACTTTCTCTACCTGATACGTCAGTGCA
TCCGCTGCAACCTGTTGCCCTCCAACGAGGTCTTCGTGTCCTGTCTAAAG
TATTTGAGCGCGCAGCGCAAGCTCCAGCAGTTGGAGGCACTGGCGGAGAC
CTGTCGGCAGCTGGAGCACCCGTTCTCACAGACCTACGCGGATCTGGCGC
CCTTCCGCGCCATCGCCCTGTGGAACAATGGTAACGCCGACGTGGCCCTG
ATGACGCTACATCGCGGTTACGGGGTAAGCATGACTTCGGAGGAGGGCAG
GCGGATGGCGCGCTCCGCATTCCGCACCATTTCCGAGGAGACTCTGGCCC
AGAAGAGTGAGGCGGTGCTAGTGTCGCTGCTGGAGGTAGCGCGTGCCATT
CACCGCGAGCACAAGGACATCTTTGTGGTGGCCTGTGTGTGGAAGCAATG
CTTCGCTAGCGATTGGTTTTGCGATCAAAAATCGGCTTCGGAACTGTTTG
AGCACTACAAGGAGCTGCAAGAGCTAGTGGAGAGGAGAGCCAGTTCTTTG
TGCTCTTCATTTCTGGCCCGTAACAATGTTGATGCGGTGCATCGGCTAAT
CGAGGCGTTCTTGCAGCACCAGCAGCGTTTGGCCTGCTCCAGCTGCCTCA
GCTTGCTCTTTAACTATCAATATATGCGCAAGGATCTGCGAGCCTGCGCT
GAGATTGTCAAATCCTGCAGTGAATTAGAGATGCCGCTAAATGAGCTGCA
GAACGAACAGTTCCTCAGTCTGTTCCTCGACCAGAGCGATCCTGTGGACT
CTTCGGGAATGGCCAGCAAGTACAAGGCACCCAAGTCCTTCCAGTACAAG
TTCTAGAAGCTTTCTAGACCAT

BS09409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-RA 1290 CG8818-PA 1..1290 17..1306 6450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-RA 1535 CG8818-RA 105..1395 16..1306 6455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12517837..12518808 987..16 4860 100 Minus
2R 25286936 2R 12517404..12517588 1306..1122 925 100 Minus
2R 25286936 2R 12517641..12517776 1121..986 680 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:44:28 has no hits.

BS09409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:17 Download gff for BS09409.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 1..1290 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:37 Download gff for BS09409.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 108..1401 10..1306 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:26 Download gff for BS09409.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 106..1395 17..1306 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:17 Download gff for BS09409.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 108..1401 10..1306 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:03 Download gff for BS09409.complete
Subject Subject Range Query Range Percent Splice Strand
CG8818-RA 106..1395 17..1306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:03 Download gff for BS09409.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12517404..12517588 1122..1306 100 <- Minus
2R 12517641..12517774 988..1121 100 <- Minus
2R 12517837..12518807 17..987 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:26 Download gff for BS09409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8404909..8405093 1122..1306 100 <- Minus
arm_2R 8405146..8405279 988..1121 100 <- Minus
arm_2R 8405342..8406312 17..987 100   Minus

BS09409.pep Sequence

Translation from 16 to 1305

> BS09409.pep
MAMLTRLTSSGTTTVAGAPGSPKGLQRFQNYISAFLWPGTQRQRRKSTHL
DPMDCFTNDLVTRKTQKWEELRDSLIKRPSSGNLEADANCNVGTQRKAGS
TSFSQNVGLMSKGMMSDLKALRSPQLGLDIRSLSQAQLDNLLMATLEIKN
KLDFLYLIRQCIRCNLLPSNEVFVSCLKYLSAQRKLQQLEALAETCRQLE
HPFSQTYADLAPFRAIALWNNGNADVALMTLHRGYGVSMTSEEGRRMARS
AFRTISEETLAQKSEAVLVSLLEVARAIHREHKDIFVVACVWKQCFASDW
FCDQKSASELFEHYKELQELVERRASSLCSSFLARNNVDAVHRLIEAFLQ
HQQRLACSSCLSLLFNYQYMRKDLRACAEIVKSCSELEMPLNELQNEQFL
SLFLDQSDPVDSSGMASKYKAPKSFQYKF*

BS09409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8818-PA 429 CG8818-PA 1..429 1..429 2204 100 Plus