Clone Sequence Records
BS09409.3prime Sequence
917 bp (765 high quality bases) assembled on 2006-04-19
> BS09409.3prime
ATGGTCTAGAAAGCTTCTAGAACTTGTACTGGAAGGACTTGGGTGCCTTG
TACTTGCTGGCCATTCCCGAAGAGTCCACAGGATCGCTCTGGTCGAGGAA
CAGACTGAGGAACTGTTCGTTCTGCAGCTCATTTAGCGGCATCTCTAATT
CACTGCAGGATTTGACAATCTCAGCGCAGGCTCGCAGATCCTTGCGCATA
TATTGATAGTTAAAGAGCAAGCTGAGGCAGCTGGAGCAGGCCAAACGCTG
CTGGTGCTGCAAGAACGCCTCGATTAGCCGATGCACCGCATCAACATTGT
TACGGGCCAGAAATGAAGAGCACAAAGAACTGGCTCTCCTCTCCACTAGC
TCTTGCAGCTCCTTGTAGTGCTCAAACAGTTCCGAAGCCGATTTTTGATC
GCAAAACCAATCGCTAGCGAAGCATTGCTTCCACACACAGGCCACCACAA
AGATGTCCTTGTGCTCGCGGTGAATGGCACGCGCTACCTCCAGCAGCGAC
ACTAGCACCGCCTCACTCTTCTGGGCCAGAGTCTCCTCGGAAATGGTGCG
GAATGCGGAGCGCGCCATCCGCCTGCCCTCCTCCGAAGTCATGCTTACCC
CGTAACCGCGATGTAGCGTCATCAGGGCCACGTCGGCGTTACCATTGTTC
CACAGGGCGATGGCGCGGAAGGGCGCCAGATCCGCGTAGGTCTGTGAGAA
CGGGTGCTCCAGCTGCCGACAGGTCTCCGCCAGTGCCTCCAACTGCTGGA
GCTTGCGCTGCGCGCTCAAATACTTTAGACAGGACACGAAGACCTCGTTG
GAGGGCAACAGGTTGCAGCGGATGCACTGACGTATCANGTAGAGAAAGTC
CAGCTTGTTCTTGATCTCCAACGTGGCCATCAGCAGGTTGTCCAGCTGCG
CCTGCGACAGGGATCTG
BS09409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8818-PA | 1290 | CG8818-RA | 390..1290 | 917..17 | 4486 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8818-RA | 1535 | CG8818-RA | 495..1395 | 917..17 | 4494 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12517837..12518418 | 336..917 | 2899 | 99.8 | Plus |
2R | 25286936 | 2R | 12517404..12517588 | 17..201 | 925 | 100 | Plus |
2R | 25286936 | 2R | 12517641..12517776 | 202..337 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:29:03 has no hits.
BS09409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:37 Download gff for
BS09409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-PA | 390..1290 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:05 Download gff for
BS09409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-PA | 390..1290 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:27:37 Download gff for
BS09409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 495..1395 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:27 Download gff for
BS09409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 495..1395 | 17..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:27 Download gff for
BS09409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12517641..12517774 | 202..335 | 100 | <- | Plus |
2R | 12517404..12517588 | 17..201 | 100 | <- | Plus |
2R | 12517837..12518418 | 336..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:27:37 Download gff for
BS09409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8404909..8405093 | 17..201 | 100 | <- | Plus |
arm_2R | 8405146..8405279 | 202..335 | 100 | <- | Plus |
arm_2R | 8405342..8405923 | 336..917 | 99 | | Plus |
BS09409.5prime Sequence
923 bp (800 high quality bases) assembled on 2006-04-19
> BS09409.5prime
GAAGTTATCAGTCGACATGGCCATGCTGACGCGATTGACCAGCAGCGGCA
CCACCACGGTGGCCGGAGCACCCGGTTCACCCAAGGGCCTGCAGCGTTTC
CAAAACTACATCTCGGCCTTCTTGTGGCCGGGAACGCAGCGGCAACGTCG
GAAGTCCACACATCTCGATCCCATGGACTGTTTCACCAACGACTTGGTGA
CCAGAAAGACCCAAAAGTGGGAGGAGCTGCGCGATAGCCTGATAAAGAGG
CCATCGTCCGGAAATCTGGAGGCGGACGCCAATTGCAATGTGGGAACGCA
GCGAAAGGCTGGTAGTACCAGCTTTAGCCAGAACGTGGGTCTTATGTCCA
AGGGCATGATGAGTGATCTGAAGGCGCTGCGCTCCCCCCAACTGGGACTG
GATATCAGATCCCTGTCGCAGGCGCAGCTGGACAACCTGCTGATGGCCAC
GTTGGAGATCAAGAACAAGCTGGACTTTCTCTACCTGATACGTCAGTGCA
TCCGCTGCAACCTGTTGCCCTCCAACGAGGTCTTCGTGTCCTGTCTAAAG
TATTTGAGCGCGCAGCGCAAGCTCCAGCAGTTGGAGGCACTGGCGGAGAC
CTGTCGGCAGCTGGAGCACCCGTTCTCACAGACCTACGCGGATCTGGCGC
CCTTCCGCGCCATCGCCCTGTGGAACAATGGTAACGCCGACGTGGCCCTG
ATGACGCTACATCGCGGTTACGGGGTAAGCATGACTTCGGAGGAGGGCAG
GCGGATGGCGCGCTCCGCATTCCGCACCATTTCCGAGGAGACTCTGGCCC
AGAAGAGTGAGGCGGTGCTAGTGTCGCTGCTGGAGGTAGCGCGTGCCATT
CACCGCGAGCACAAGGACATCTTTGTGGTGGCCTGTGTGTGGGAGCAATG
CTTCGCTAGCGATTGGTTTTGCG
BS09409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8818-PA | 1290 | CG8818-RA | 1..907 | 17..923 | 4510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8818-RA | 1535 | CG8818-RA | 105..1012 | 16..923 | 4525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12517901..12518808 | 923..16 | 4525 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:11:01 has no hits.
BS09409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:38 Download gff for
BS09409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:07 Download gff for
BS09409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:16:09 Download gff for
BS09409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 102..1012 | 10..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:06 Download gff for
BS09409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 102..1012 | 10..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:06 Download gff for
BS09409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12517901..12518811 | 10..923 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:16:09 Download gff for
BS09409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8405406..8406316 | 10..923 | 99 | | Minus |
BS09409.complete Sequence
1322 bp (1322 high quality bases) assembled on 2006-02-16
GenBank Submission: FJ636409
> BS09409.complete
GAAGTTATCAGTCGACATGGCCATGCTGACGCGATTGACCAGCAGCGGCA
CCACCACGGTGGCCGGAGCACCCGGTTCACCCAAGGGCCTGCAGCGTTTC
CAAAACTACATCTCGGCCTTCTTGTGGCCGGGAACGCAGCGGCAACGTCG
GAAGTCCACACATCTCGATCCCATGGACTGTTTCACCAACGACTTGGTGA
CCAGAAAGACCCAAAAGTGGGAGGAGCTGCGCGATAGCCTGATAAAGAGG
CCATCGTCCGGAAATCTGGAGGCGGACGCCAATTGCAATGTGGGAACGCA
GCGAAAGGCTGGTAGTACCAGCTTTAGCCAGAACGTGGGTCTTATGTCCA
AGGGCATGATGAGTGATCTGAAGGCGCTGCGCTCCCCCCAACTGGGACTG
GATATCAGATCCCTGTCGCAGGCGCAGCTGGACAACCTGCTGATGGCCAC
GTTGGAGATCAAGAACAAGCTGGACTTTCTCTACCTGATACGTCAGTGCA
TCCGCTGCAACCTGTTGCCCTCCAACGAGGTCTTCGTGTCCTGTCTAAAG
TATTTGAGCGCGCAGCGCAAGCTCCAGCAGTTGGAGGCACTGGCGGAGAC
CTGTCGGCAGCTGGAGCACCCGTTCTCACAGACCTACGCGGATCTGGCGC
CCTTCCGCGCCATCGCCCTGTGGAACAATGGTAACGCCGACGTGGCCCTG
ATGACGCTACATCGCGGTTACGGGGTAAGCATGACTTCGGAGGAGGGCAG
GCGGATGGCGCGCTCCGCATTCCGCACCATTTCCGAGGAGACTCTGGCCC
AGAAGAGTGAGGCGGTGCTAGTGTCGCTGCTGGAGGTAGCGCGTGCCATT
CACCGCGAGCACAAGGACATCTTTGTGGTGGCCTGTGTGTGGAAGCAATG
CTTCGCTAGCGATTGGTTTTGCGATCAAAAATCGGCTTCGGAACTGTTTG
AGCACTACAAGGAGCTGCAAGAGCTAGTGGAGAGGAGAGCCAGTTCTTTG
TGCTCTTCATTTCTGGCCCGTAACAATGTTGATGCGGTGCATCGGCTAAT
CGAGGCGTTCTTGCAGCACCAGCAGCGTTTGGCCTGCTCCAGCTGCCTCA
GCTTGCTCTTTAACTATCAATATATGCGCAAGGATCTGCGAGCCTGCGCT
GAGATTGTCAAATCCTGCAGTGAATTAGAGATGCCGCTAAATGAGCTGCA
GAACGAACAGTTCCTCAGTCTGTTCCTCGACCAGAGCGATCCTGTGGACT
CTTCGGGAATGGCCAGCAAGTACAAGGCACCCAAGTCCTTCCAGTACAAG
TTCTAGAAGCTTTCTAGACCAT
BS09409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8818-RA | 1290 | CG8818-PA | 1..1290 | 17..1306 | 6450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8818-RA | 1535 | CG8818-RA | 105..1395 | 16..1306 | 6455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12517837..12518808 | 987..16 | 4860 | 100 | Minus |
2R | 25286936 | 2R | 12517404..12517588 | 1306..1122 | 925 | 100 | Minus |
2R | 25286936 | 2R | 12517641..12517776 | 1121..986 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:44:28 has no hits.
BS09409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:41:17 Download gff for
BS09409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 1..1290 | 17..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:27:37 Download gff for
BS09409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 108..1401 | 10..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:26 Download gff for
BS09409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 106..1395 | 17..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:41:17 Download gff for
BS09409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 108..1401 | 10..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:03 Download gff for
BS09409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8818-RA | 106..1395 | 17..1306 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:03 Download gff for
BS09409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12517404..12517588 | 1122..1306 | 100 | <- | Minus |
2R | 12517641..12517774 | 988..1121 | 100 | <- | Minus |
2R | 12517837..12518807 | 17..987 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:26 Download gff for
BS09409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8404909..8405093 | 1122..1306 | 100 | <- | Minus |
arm_2R | 8405146..8405279 | 988..1121 | 100 | <- | Minus |
arm_2R | 8405342..8406312 | 17..987 | 100 | | Minus |
BS09409.pep Sequence
Translation from 16 to 1305
> BS09409.pep
MAMLTRLTSSGTTTVAGAPGSPKGLQRFQNYISAFLWPGTQRQRRKSTHL
DPMDCFTNDLVTRKTQKWEELRDSLIKRPSSGNLEADANCNVGTQRKAGS
TSFSQNVGLMSKGMMSDLKALRSPQLGLDIRSLSQAQLDNLLMATLEIKN
KLDFLYLIRQCIRCNLLPSNEVFVSCLKYLSAQRKLQQLEALAETCRQLE
HPFSQTYADLAPFRAIALWNNGNADVALMTLHRGYGVSMTSEEGRRMARS
AFRTISEETLAQKSEAVLVSLLEVARAIHREHKDIFVVACVWKQCFASDW
FCDQKSASELFEHYKELQELVERRASSLCSSFLARNNVDAVHRLIEAFLQ
HQQRLACSSCLSLLFNYQYMRKDLRACAEIVKSCSELEMPLNELQNEQFL
SLFLDQSDPVDSSGMASKYKAPKSFQYKF*
BS09409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8818-PA | 429 | CG8818-PA | 1..429 | 1..429 | 2204 | 100 | Plus |