Clone Sequence Records
BS09410.3prime Sequence
777 bp (776 high quality bases) assembled on 2006-04-19
> BS09410.3prime
ATGGTCTAGAAAGCTTCTAGTTGGATTTGCGCTTGGCCAACTTCACTTCC
TTGGCCCAGACGGTATTGTTGAGGAACTCGCCCAGCAGGTAAAGTGACAG
CGTGAATCCAACGACGGCCGCAAAAAACAGGATGCGTTGCGGAAGCTGGA
GAACCTCGAGCACTGGATACACCCACACACCCGAGTAGTGCTTCACCACG
TGAATCCAAACCAGGTAGGCGCCCATGAAAATGGCCAGTCCTGCGAGTCC
TTGGCTTCGTTTTGGGTACGACCTGTACGAGATGAACAGCTCCAGGATGA
TGAAAACCACTATGTTGGTGTGCAGGACGTGGTTGAGCCAGCTGGGGAAC
ACGGGGTCCAGAACCTTGGGGAAGACTAGCTCCCTGTCGATAGCGTACAG
TGTCCAGAAGGTCACGCCCACATTGATAGCCACTGGAAAGGCCAATGTAG
CCATCAGCCAGTCCTTGAACCTGCGAACCGCCGGAGGTTTCTTGGGTGTC
AGCTCATTAGTGCCCACGAAATCGTTGACCAGCGATACAATATAGTACAG
TGCCTGAATTATCGCATCCAGGAACGTTAGGTATTTGAATTTGCCCCCCC
AGGGATGATGGATCCTCATCTCTGGCTCGCTGGTGGGGAACTGCACGTAG
TTGTAGTCGTAATAGATGCCGTAGCCAAATTGCACGACTGCCGTCAGGTG
GAGCAGGGTCCTCAGAGCCCCGTAGACGCCCTGGTACACGGAGTTGCCTC
GCACGGATGCCATGACGACTGATAACT
BS09410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-PB | 747 | CG3625-RB | 1..747 | 763..17 | 3735 | 100 | Minus |
CG3625-PA | 738 | CG3625-RA | 189..738 | 566..17 | 2750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-RB | 1341 | CG3625-RB | 94..840 | 763..17 | 3735 | 100 | Minus |
CG3625-RA | 995 | CG3625-RA | 222..771 | 566..17 | 2750 | 100 | Minus |
CG3625-RE | 1401 | CG3625-RE | 354..900 | 563..17 | 2735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 283886..284213 | 17..344 | 1640 | 100 | Plus |
2L | 23513712 | 2L | 284748..284969 | 342..563 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 285428..285633 | 558..763 | 1015 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 08:09:44 has no hits.
BS09410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:39 Download gff for
BS09410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-PB | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:09 Download gff for
BS09410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-PB | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:12 Download gff for
BS09410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 94..843 | 14..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:51:59 Download gff for
BS09410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 94..843 | 14..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:51:59 Download gff for
BS09410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 283883..284210 | 14..341 | 99 | <- | Plus |
2L | 284748..284968 | 342..562 | 100 | <- | Plus |
2L | 285433..285637 | 563..766 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:12 Download gff for
BS09410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 283883..284210 | 14..341 | 99 | <- | Plus |
arm_2L | 284748..284968 | 342..562 | 100 | <- | Plus |
arm_2L | 285433..285637 | 563..766 | 98 | <- | Plus |
BS09410.5prime Sequence
777 bp (776 high quality bases) assembled on 2006-04-19
> BS09410.5prime
GAAGTTATCAGTCGTCATGGCATCCGTGCGAGGCAACTCCGTGTACCAGG
GCGTCTACGGGGCTCTGAGGACCCTGCTCCACCTGACGGCAGTCGTGCAA
TTTGGCTACGGCATCTATTACGACTACAACTACGTGCAGTTCCCCACCAG
CGAGCCAGAGATGAGGATCCATCATCCCTGGGGGGGCAAATTCAAATACC
TAACGTTCCTGGATGCGATAATTCAGGCACTGTACTATATTGTATCGCTG
GTCAACGATTTCGTGGGCACTAATGAGCTGACACCCAAGAAACCTCCGGC
GGTTCGCAGGTTCAAGGACTGGCTGATGGCTACATTGGCCTTTCCAGTGG
CTATCAATGTGGGCGTGACCTTCTGGACACTGTACGCTATCGACAGGGAG
CTAGTCTTCCCCAAGGTTCTGGACCCCGTGTTCCCCAGCTGGCTCAACCA
CGTCCTGCACACCAACATAGTGGTTTTCATCATCCTGGAGCTGTTCATCT
CGTACAGGTCGTACCCAAAACGAAGCCAAGGACTCGCAGGACTGGCCATT
TTCATGGGCGCCTACCTGGTTTGGATTCACGTGGTGAAGCACTACTCGGG
TGTGTGGGTGTATCCAGTGCTCGAGGTTCTCCAGCTTCCGCAACGCATCC
TGTTTTTTGCGGCCGTCGTTGGATTCACGCTGTCACTTTACCTGCTGGGC
GAGTTCCTCAACAATACCGTCTGGGCCAAGGAAGTGAAGTTGGCCAAGCG
CAAATCCAACTAGAAGCTTTCTAGACC
BS09410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-PB | 747 | CG3625-RB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG3625-PA | 738 | CG3625-RA | 189..738 | 214..763 | 2750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-RB | 1341 | CG3625-RB | 94..840 | 17..763 | 3735 | 100 | Plus |
CG3625-RA | 995 | CG3625-RA | 222..771 | 214..763 | 2750 | 100 | Plus |
CG3625-RE | 1401 | CG3625-RE | 354..900 | 217..763 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 283886..284213 | 763..436 | 1640 | 100 | Minus |
2L | 23513712 | 2L | 284748..284969 | 438..217 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 285428..285633 | 222..17 | 1015 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:56:15 has no hits.
BS09410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:40 Download gff for
BS09410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-PB | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:11 Download gff for
BS09410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-PB | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:37 Download gff for
BS09410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 94..843 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:22 Download gff for
BS09410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 94..843 | 17..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:22 Download gff for
BS09410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 284748..284968 | 218..438 | 100 | <- | Minus |
2L | 285433..285637 | 14..217 | 98 | <- | Minus |
2L | 283883..284210 | 439..766 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:37 Download gff for
BS09410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 283883..284210 | 439..766 | 99 | <- | Minus |
arm_2L | 284748..284968 | 218..438 | 100 | <- | Minus |
arm_2L | 285433..285637 | 14..217 | 98 | <- | Minus |
BS09410.complete Sequence
779 bp assembled on 2008-08-15
GenBank Submission: FJ636410
> BS09410.complete
GAAGTTATCAGTCGTCATGGCATCCGTGCGAGGCAACTCCGTGTACCAGG
GCGTCTACGGGGCTCTGAGGACCCTGCTCCACCTGACGGCAGTCGTGCAA
TTTGGCTACGGCATCTATTACGACTACAACTACGTGCAGTTCCCCACCAG
CGAGCCAGAGATGAGGATCCATCATCCCTGGGGGGGCAAATTCAAATACC
TAACGTTCCTGGATGCGATAATTCAGGCACTGTACTATATTGTATCGCTG
GTCAACGATTTCGTGGGCACTAATGAGCTGACACCCAAGAAACCTCCGGC
GGTTCGCAGGTTCAAGGACTGGCTGATGGCTACATTGGCCTTTCCAGTGG
CTATCAATGTGGGCGTGACCTTCTGGACACTGTACGCTATCGACAGGGAG
CTAGTCTTCCCCAAGGTTCTGGACCCCGTGTTCCCCAGCTGGCTCAACCA
CGTCCTGCACACCAACATAGTGGTTTTCATCATCCTGGAGCTGTTCATCT
CGTACAGGTCGTACCCAAAACGAAGCCAAGGACTCGCAGGACTGGCCATT
TTCATGGGCGCCTACCTGGTTTGGATTCACGTGGTGAAGCACTACTCGGG
TGTGTGGGTGTATCCAGTGCTCGAGGTTCTCCAGCTTCCGCAACGCATCC
TGTTTTTTGCGGCCGTCGTTGGATTCACGCTGTCACTTTACCTGCTGGGC
GAGTTCCTCAACAATACCGTCTGGGCCAAGGAAGTGAAGTTGGCCAAGCG
CAAATCCAACTAGAAGCTTTCTAGACCAT
BS09410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-RB | 747 | CG3625-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG3625-RA | 738 | CG3625-PA | 189..738 | 214..763 | 2750 | 100 | Plus |
CG3625-RE | 744 | CG3625-PE | 198..744 | 217..763 | 2735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-RB | 1341 | CG3625-RB | 94..840 | 17..763 | 3735 | 100 | Plus |
CG3625-RA | 995 | CG3625-RA | 222..771 | 214..763 | 2750 | 100 | Plus |
CG3625-RE | 1401 | CG3625-RE | 354..900 | 217..763 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 283886..284213 | 763..436 | 1640 | 100 | Minus |
2L | 23513712 | 2L | 284748..284969 | 438..217 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 285428..285633 | 222..17 | 1015 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:03:54 has no hits.
BS09410.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:17 Download gff for
BS09410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 144..893 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:44 Download gff for
BS09410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 94..840 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:57 Download gff for
BS09410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 144..890 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:08 Download gff for
BS09410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3625-RB | 94..840 | 17..763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:08 Download gff for
BS09410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 283886..284210 | 439..763 | 100 | <- | Minus |
2L | 284748..284968 | 218..438 | 100 | <- | Minus |
2L | 285433..285633 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:44 Download gff for
BS09410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 283886..284210 | 439..763 | 100 | <- | Minus |
arm_2L | 284748..284968 | 218..438 | 100 | <- | Minus |
arm_2L | 285433..285633 | 17..217 | 100 | | Minus |
BS09410.pep Sequence
Translation from 16 to 762
> BS09410.pep
MASVRGNSVYQGVYGALRTLLHLTAVVQFGYGIYYDYNYVQFPTSEPEMR
IHHPWGGKFKYLTFLDAIIQALYYIVSLVNDFVGTNELTPKKPPAVRRFK
DWLMATLAFPVAINVGVTFWTLYAIDRELVFPKVLDPVFPSWLNHVLHTN
IVVFIILELFISYRSYPKRSQGLAGLAIFMGAYLVWIHVVKHYSGVWVYP
VLEVLQLPQRILFFAAVVGFTLSLYLLGEFLNNTVWAKEVKLAKRKSN*
BS09410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3625-PB | 248 | CG3625-PB | 1..248 | 1..248 | 1308 | 100 | Plus |
CG3625-PA | 245 | CG3625-PA | 8..245 | 3..248 | 1049 | 84.1 | Plus |
CG3625-PE | 247 | CG3625-PE | 14..247 | 19..248 | 998 | 84.2 | Plus |
CG3625-PC | 247 | CG3625-PC | 14..247 | 19..248 | 998 | 84.2 | Plus |
CG11601-PC | 275 | CG11601-PC | 29..270 | 7..246 | 638 | 48.4 | Plus |