Clone BS09410 Report

Search the DGRC for BS09410

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:94
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG3625-RB
Protein status:BS09410.pep: full length peptide match
Sequenced Size:779

Clone Sequence Records

BS09410.3prime Sequence

777 bp (776 high quality bases) assembled on 2006-04-19

> BS09410.3prime
ATGGTCTAGAAAGCTTCTAGTTGGATTTGCGCTTGGCCAACTTCACTTCC
TTGGCCCAGACGGTATTGTTGAGGAACTCGCCCAGCAGGTAAAGTGACAG
CGTGAATCCAACGACGGCCGCAAAAAACAGGATGCGTTGCGGAAGCTGGA
GAACCTCGAGCACTGGATACACCCACACACCCGAGTAGTGCTTCACCACG
TGAATCCAAACCAGGTAGGCGCCCATGAAAATGGCCAGTCCTGCGAGTCC
TTGGCTTCGTTTTGGGTACGACCTGTACGAGATGAACAGCTCCAGGATGA
TGAAAACCACTATGTTGGTGTGCAGGACGTGGTTGAGCCAGCTGGGGAAC
ACGGGGTCCAGAACCTTGGGGAAGACTAGCTCCCTGTCGATAGCGTACAG
TGTCCAGAAGGTCACGCCCACATTGATAGCCACTGGAAAGGCCAATGTAG
CCATCAGCCAGTCCTTGAACCTGCGAACCGCCGGAGGTTTCTTGGGTGTC
AGCTCATTAGTGCCCACGAAATCGTTGACCAGCGATACAATATAGTACAG
TGCCTGAATTATCGCATCCAGGAACGTTAGGTATTTGAATTTGCCCCCCC
AGGGATGATGGATCCTCATCTCTGGCTCGCTGGTGGGGAACTGCACGTAG
TTGTAGTCGTAATAGATGCCGTAGCCAAATTGCACGACTGCCGTCAGGTG
GAGCAGGGTCCTCAGAGCCCCGTAGACGCCCTGGTACACGGAGTTGCCTC
GCACGGATGCCATGACGACTGATAACT

BS09410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-PB 747 CG3625-RB 1..747 763..17 3735 100 Minus
CG3625-PA 738 CG3625-RA 189..738 566..17 2750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-RB 1341 CG3625-RB 94..840 763..17 3735 100 Minus
CG3625-RA 995 CG3625-RA 222..771 566..17 2750 100 Minus
CG3625-RE 1401 CG3625-RE 354..900 563..17 2735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 283886..284213 17..344 1640 100 Plus
2L 23513712 2L 284748..284969 342..563 1110 100 Plus
2L 23513712 2L 285428..285633 558..763 1015 99.5 Plus
Blast to na_te.dros performed on 2015-02-03 08:09:44 has no hits.

BS09410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:39 Download gff for BS09410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3625-PB 1..747 17..763 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:09 Download gff for BS09410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3625-PB 1..747 17..763 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:12 Download gff for BS09410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 94..843 14..763 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:51:59 Download gff for BS09410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 94..843 14..763 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:51:59 Download gff for BS09410.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 283883..284210 14..341 99 <- Plus
2L 284748..284968 342..562 100 <- Plus
2L 285433..285637 563..766 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:12 Download gff for BS09410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 283883..284210 14..341 99 <- Plus
arm_2L 284748..284968 342..562 100 <- Plus
arm_2L 285433..285637 563..766 98 <- Plus

BS09410.5prime Sequence

777 bp (776 high quality bases) assembled on 2006-04-19

> BS09410.5prime
GAAGTTATCAGTCGTCATGGCATCCGTGCGAGGCAACTCCGTGTACCAGG
GCGTCTACGGGGCTCTGAGGACCCTGCTCCACCTGACGGCAGTCGTGCAA
TTTGGCTACGGCATCTATTACGACTACAACTACGTGCAGTTCCCCACCAG
CGAGCCAGAGATGAGGATCCATCATCCCTGGGGGGGCAAATTCAAATACC
TAACGTTCCTGGATGCGATAATTCAGGCACTGTACTATATTGTATCGCTG
GTCAACGATTTCGTGGGCACTAATGAGCTGACACCCAAGAAACCTCCGGC
GGTTCGCAGGTTCAAGGACTGGCTGATGGCTACATTGGCCTTTCCAGTGG
CTATCAATGTGGGCGTGACCTTCTGGACACTGTACGCTATCGACAGGGAG
CTAGTCTTCCCCAAGGTTCTGGACCCCGTGTTCCCCAGCTGGCTCAACCA
CGTCCTGCACACCAACATAGTGGTTTTCATCATCCTGGAGCTGTTCATCT
CGTACAGGTCGTACCCAAAACGAAGCCAAGGACTCGCAGGACTGGCCATT
TTCATGGGCGCCTACCTGGTTTGGATTCACGTGGTGAAGCACTACTCGGG
TGTGTGGGTGTATCCAGTGCTCGAGGTTCTCCAGCTTCCGCAACGCATCC
TGTTTTTTGCGGCCGTCGTTGGATTCACGCTGTCACTTTACCTGCTGGGC
GAGTTCCTCAACAATACCGTCTGGGCCAAGGAAGTGAAGTTGGCCAAGCG
CAAATCCAACTAGAAGCTTTCTAGACC

BS09410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-PB 747 CG3625-RB 1..747 17..763 3735 100 Plus
CG3625-PA 738 CG3625-RA 189..738 214..763 2750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-RB 1341 CG3625-RB 94..840 17..763 3735 100 Plus
CG3625-RA 995 CG3625-RA 222..771 214..763 2750 100 Plus
CG3625-RE 1401 CG3625-RE 354..900 217..763 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 283886..284213 763..436 1640 100 Minus
2L 23513712 2L 284748..284969 438..217 1110 100 Minus
2L 23513712 2L 285428..285633 222..17 1015 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 07:56:15 has no hits.

BS09410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:08:40 Download gff for BS09410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3625-PB 1..747 17..763 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 11:18:11 Download gff for BS09410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3625-PB 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:37 Download gff for BS09410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 94..843 17..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:04:22 Download gff for BS09410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 94..843 17..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:04:22 Download gff for BS09410.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 284748..284968 218..438 100 <- Minus
2L 285433..285637 14..217 98 <- Minus
2L 283883..284210 439..766 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:37 Download gff for BS09410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 283883..284210 439..766 99 <- Minus
arm_2L 284748..284968 218..438 100 <- Minus
arm_2L 285433..285637 14..217 98 <- Minus

BS09410.complete Sequence

779 bp assembled on 2008-08-15

GenBank Submission: FJ636410

> BS09410.complete
GAAGTTATCAGTCGTCATGGCATCCGTGCGAGGCAACTCCGTGTACCAGG
GCGTCTACGGGGCTCTGAGGACCCTGCTCCACCTGACGGCAGTCGTGCAA
TTTGGCTACGGCATCTATTACGACTACAACTACGTGCAGTTCCCCACCAG
CGAGCCAGAGATGAGGATCCATCATCCCTGGGGGGGCAAATTCAAATACC
TAACGTTCCTGGATGCGATAATTCAGGCACTGTACTATATTGTATCGCTG
GTCAACGATTTCGTGGGCACTAATGAGCTGACACCCAAGAAACCTCCGGC
GGTTCGCAGGTTCAAGGACTGGCTGATGGCTACATTGGCCTTTCCAGTGG
CTATCAATGTGGGCGTGACCTTCTGGACACTGTACGCTATCGACAGGGAG
CTAGTCTTCCCCAAGGTTCTGGACCCCGTGTTCCCCAGCTGGCTCAACCA
CGTCCTGCACACCAACATAGTGGTTTTCATCATCCTGGAGCTGTTCATCT
CGTACAGGTCGTACCCAAAACGAAGCCAAGGACTCGCAGGACTGGCCATT
TTCATGGGCGCCTACCTGGTTTGGATTCACGTGGTGAAGCACTACTCGGG
TGTGTGGGTGTATCCAGTGCTCGAGGTTCTCCAGCTTCCGCAACGCATCC
TGTTTTTTGCGGCCGTCGTTGGATTCACGCTGTCACTTTACCTGCTGGGC
GAGTTCCTCAACAATACCGTCTGGGCCAAGGAAGTGAAGTTGGCCAAGCG
CAAATCCAACTAGAAGCTTTCTAGACCAT

BS09410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-RB 747 CG3625-PB 1..747 17..763 3735 100 Plus
CG3625-RA 738 CG3625-PA 189..738 214..763 2750 100 Plus
CG3625-RE 744 CG3625-PE 198..744 217..763 2735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-RB 1341 CG3625-RB 94..840 17..763 3735 100 Plus
CG3625-RA 995 CG3625-RA 222..771 214..763 2750 100 Plus
CG3625-RE 1401 CG3625-RE 354..900 217..763 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 283886..284213 763..436 1640 100 Minus
2L 23513712 2L 284748..284969 438..217 1110 100 Minus
2L 23513712 2L 285428..285633 222..17 1015 99.5 Minus
Blast to na_te.dros performed on 2014-11-27 15:03:54 has no hits.

BS09410.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:55:17 Download gff for BS09410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 144..893 17..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:44 Download gff for BS09410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 94..840 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:57 Download gff for BS09410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 144..890 17..763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:08 Download gff for BS09410.complete
Subject Subject Range Query Range Percent Splice Strand
CG3625-RB 94..840 17..763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:08 Download gff for BS09410.complete
Subject Subject Range Query Range Percent Splice Strand
2L 283886..284210 439..763 100 <- Minus
2L 284748..284968 218..438 100 <- Minus
2L 285433..285633 17..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:44 Download gff for BS09410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 283886..284210 439..763 100 <- Minus
arm_2L 284748..284968 218..438 100 <- Minus
arm_2L 285433..285633 17..217 100   Minus

BS09410.pep Sequence

Translation from 16 to 762

> BS09410.pep
MASVRGNSVYQGVYGALRTLLHLTAVVQFGYGIYYDYNYVQFPTSEPEMR
IHHPWGGKFKYLTFLDAIIQALYYIVSLVNDFVGTNELTPKKPPAVRRFK
DWLMATLAFPVAINVGVTFWTLYAIDRELVFPKVLDPVFPSWLNHVLHTN
IVVFIILELFISYRSYPKRSQGLAGLAIFMGAYLVWIHVVKHYSGVWVYP
VLEVLQLPQRILFFAAVVGFTLSLYLLGEFLNNTVWAKEVKLAKRKSN*

BS09410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3625-PB 248 CG3625-PB 1..248 1..248 1308 100 Plus
CG3625-PA 245 CG3625-PA 8..245 3..248 1049 84.1 Plus
CG3625-PE 247 CG3625-PE 14..247 19..248 998 84.2 Plus
CG3625-PC 247 CG3625-PC 14..247 19..248 998 84.2 Plus
CG11601-PC 275 CG11601-PC 29..270 7..246 638 48.4 Plus